Wall clock time and date at job start Tue Mar 31 2020 06:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36001 * 117.00304 * 2 1 4 4 C 1.38106 * 119.99369 * 359.72227 * 3 2 1 5 5 C 1.39830 * 119.83820 * 179.76807 * 4 3 2 6 6 C 1.47416 * 120.07677 * 180.23441 * 5 4 3 7 7 O 1.21545 * 120.00345 * 0.29478 * 6 5 4 8 8 O 1.34776 * 120.00006 * 180.30045 * 6 5 4 9 9 C 1.34858 * 116.99865 * 179.97438 * 8 6 5 10 10 H 1.07995 * 120.00377 * 0.02562 * 9 8 6 11 11 C 1.38805 * 119.99534 * 179.97438 * 9 8 6 12 12 N 1.31421 * 119.99896 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99544 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47286 * 60.00413 * 13 11 9 15 15 H 1.48500 * 109.46876 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.47113 * 299.99714 * 13 11 9 17 17 C 1.39800 * 119.84247 * 0.53394 * 5 4 3 18 18 C 1.37760 * 119.99493 * 359.72125 * 17 5 4 19 19 C 1.38865 * 120.15758 * 0.02562 * 18 17 5 20 20 O 1.35783 * 119.92120 * 179.97438 * 19 18 17 21 21 C 1.42905 * 116.99934 * 0.02562 * 20 19 18 22 22 C 1.53005 * 109.46978 * 179.97438 * 21 20 19 23 23 C 1.53001 * 109.47000 * 64.99869 * 22 21 20 24 24 C 1.52997 * 109.46932 * 185.00498 * 22 21 20 25 25 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46938 * 59.99841 * 1 2 3 27 27 H 1.09004 * 109.46926 * 299.99962 * 1 2 3 28 28 H 1.08000 * 120.08410 * 0.02840 * 4 3 2 29 29 H 0.97007 * 119.99901 * 179.97438 * 12 11 9 30 30 H 1.07999 * 119.99916 * 179.70124 * 17 5 4 31 31 H 1.07992 * 119.92180 * 179.97438 * 18 17 5 32 32 H 1.08991 * 109.47137 * 299.99922 * 21 20 19 33 33 H 1.08998 * 109.46991 * 60.00002 * 21 20 19 34 34 H 1.09004 * 109.46682 * 304.99718 * 22 21 20 35 35 H 1.09002 * 109.46899 * 179.97438 * 23 22 21 36 36 H 1.08989 * 109.47585 * 299.99948 * 23 22 21 37 37 H 1.09004 * 109.46804 * 60.00555 * 23 22 21 38 38 H 1.08998 * 109.47728 * 59.99875 * 24 22 21 39 39 H 1.08998 * 109.47188 * 180.02562 * 24 22 21 40 40 H 1.09010 * 109.46916 * 299.99567 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2943 2.3700 -0.0058 5 6 1.9325 3.6141 -0.0009 6 6 1.1347 4.8537 -0.0018 7 8 -0.0793 4.7951 -0.0014 8 8 1.7515 6.0521 -0.0032 9 6 0.9633 7.1463 -0.0045 10 1 -0.1112 7.0378 -0.0040 11 6 1.5331 8.4120 -0.0054 12 7 2.8407 8.5439 -0.0045 13 14 0.4413 9.9277 -0.0065 14 1 -0.4160 9.9211 1.2060 15 1 1.2880 11.1476 -0.0068 16 1 -0.4160 9.9193 -1.2191 17 6 3.3290 3.6796 -0.0014 18 6 4.0728 2.5201 -0.0010 19 6 3.4389 1.2846 -0.0005 20 8 4.1768 0.1447 -0.0006 21 6 5.5982 0.2921 -0.0006 22 6 6.2542 -1.0902 -0.0001 23 6 5.9221 -1.8128 -1.3072 24 6 7.7710 -0.9348 0.1258 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 0.2157 2.3150 -0.0099 29 1 3.2389 9.4285 -0.0055 30 1 3.8246 4.6392 -0.0025 31 1 5.1515 2.5721 -0.0018 32 1 5.9066 0.8406 -0.8905 33 1 5.9066 0.8405 0.8894 34 1 5.8774 -1.6708 0.8420 35 1 6.3898 -2.7974 -1.3070 36 1 4.8416 -1.9235 -1.3968 37 1 6.2990 -1.2321 -2.1492 38 1 8.0076 -0.4201 1.0570 39 1 8.2384 -1.9195 0.1257 40 1 8.1479 -0.3541 -0.7163 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000773839457.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:44 Heat of formation + Delta-G solvation = -139.700144 kcal Electronic energy + Delta-G solvation = -23180.442554 eV Core-core repulsion = 19540.365505 eV Total energy + Delta-G solvation = -3640.077049 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.47077 -38.97624 -38.55508 -36.68338 -35.41512 -34.95779 -32.21135 -30.15990 -30.07118 -27.40608 -27.28358 -26.76735 -25.38023 -23.08393 -22.13062 -20.56319 -20.03334 -18.44018 -17.82000 -17.38915 -16.50345 -16.16058 -15.84793 -15.49281 -14.83212 -14.80812 -14.47624 -14.40587 -14.37397 -14.28743 -13.51932 -13.22723 -12.85792 -12.55201 -12.49429 -12.29874 -12.11699 -11.69918 -11.50992 -11.40411 -11.30620 -11.25970 -11.06442 -10.89768 -10.72459 -10.70472 -10.49291 -10.35002 -9.87272 -9.11000 -8.62976 -8.54760 -7.64161 -6.48286 -4.10838 1.21352 1.59991 3.12673 3.14954 3.16481 3.20284 3.37922 3.44578 3.90225 4.30096 4.50460 4.54547 4.60457 4.83509 5.01176 5.09520 5.12614 5.19312 5.22321 5.29088 5.29164 5.39936 5.42484 5.51293 5.60378 5.61715 5.65621 5.68895 5.80501 5.84199 5.94952 6.04348 6.11631 6.47187 6.68398 6.82433 6.98051 7.15420 7.34714 7.68649 7.89569 8.67292 9.00453 9.80577 10.69368 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.020203 B = 0.003450 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.606299 B = 8112.984456 C = 9385.865753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.309 6.309 3 C 0.083 3.917 4 C -0.123 4.123 5 C -0.087 4.087 6 C 0.435 3.565 7 O -0.556 6.556 8 O -0.204 6.204 9 C -0.375 4.375 10 H 0.097 0.903 11 C 0.042 3.958 12 N -0.859 5.859 13 Si 0.946 3.054 14 H -0.269 1.269 15 H -0.278 1.278 16 H -0.269 1.269 17 C -0.064 4.064 18 C -0.186 4.186 19 C 0.115 3.885 20 O -0.302 6.302 21 C 0.059 3.941 22 C -0.094 4.094 23 C -0.147 4.147 24 C -0.146 4.146 25 H 0.097 0.903 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.146 0.854 29 H 0.272 0.728 30 H 0.147 0.853 31 H 0.137 0.863 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.080 0.920 35 H 0.054 0.946 36 H 0.064 0.936 37 H 0.053 0.947 38 H 0.058 0.942 39 H 0.062 0.938 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.931 -17.497 -0.322 18.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.223 6.223 3 C 0.038 3.962 4 C -0.142 4.142 5 C -0.089 4.089 6 C 0.284 3.716 7 O -0.455 6.455 8 O -0.110 6.110 9 C -0.451 4.451 10 H 0.115 0.885 11 C -0.163 4.163 12 N -0.496 5.496 13 Si 0.770 3.230 14 H -0.194 1.194 15 H -0.203 1.203 16 H -0.194 1.194 17 C -0.083 4.083 18 C -0.205 4.205 19 C 0.069 3.931 20 O -0.215 6.215 21 C -0.016 4.016 22 C -0.112 4.112 23 C -0.204 4.204 24 C -0.203 4.203 25 H 0.115 0.885 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.164 0.836 29 H 0.081 0.919 30 H 0.165 0.835 31 H 0.155 0.845 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.099 0.901 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.831 -17.700 -0.324 18.975 hybrid contribution -0.577 1.151 0.011 1.288 sum 6.254 -16.549 -0.313 17.694 Atomic orbital electron populations 1.23058 0.78712 1.03512 1.01734 1.86121 1.20887 1.25649 1.89633 1.17926 0.88841 0.84963 1.04497 1.21098 1.00685 0.89888 1.02496 1.19074 0.93163 0.91351 1.05273 1.20604 0.86349 0.84810 0.79865 1.90619 1.15152 1.87891 1.51880 1.83897 1.39651 1.12665 1.74837 1.21264 0.91150 0.81171 1.51523 0.88520 1.25376 0.96504 0.98291 0.96134 1.69968 1.09517 1.24564 1.45502 0.85704 0.78931 0.78902 0.79446 1.19389 1.20295 1.19382 1.21350 0.92687 0.98946 0.95290 1.21011 1.00343 0.90766 1.08357 1.18356 0.88020 0.85894 1.00871 1.86066 1.18321 1.28454 1.88708 1.22935 0.78785 0.98307 1.01565 1.21105 0.95260 0.94914 0.99945 1.21818 1.02559 0.99782 0.96269 1.21787 0.94061 1.02326 1.02172 0.88467 0.92579 0.92568 0.83639 0.91851 0.83531 0.84527 0.91896 0.91943 0.90121 0.92702 0.91646 0.92742 0.92301 0.91857 0.92289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.81 101.05 0.99 1.28 16 2 O -0.31 -4.77 10.28 -34.41 -0.35 -5.13 16 3 C 0.08 1.40 6.69 -39.19 -0.26 1.14 16 4 C -0.12 -2.27 8.58 -39.03 -0.33 -2.61 16 5 C -0.09 -1.84 5.87 -104.98 -0.62 -2.45 16 6 C 0.44 11.31 7.83 34.47 0.27 11.58 16 7 O -0.56 -15.43 15.59 -19.30 -0.30 -15.73 16 8 O -0.20 -5.88 8.98 -21.77 -0.20 -6.07 16 9 C -0.38 -11.09 9.65 30.94 0.30 -10.79 16 10 H 0.10 2.87 6.86 -52.49 -0.36 2.51 16 11 C 0.04 1.16 5.50 -17.52 -0.10 1.07 16 12 N -0.86 -24.70 13.67 55.49 0.76 -23.94 16 13 Si 0.95 21.08 29.55 -169.99 -5.02 16.05 16 14 H -0.27 -5.87 7.11 56.52 0.40 -5.46 16 15 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 16 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 17 C -0.06 -1.20 9.61 -39.17 -0.38 -1.57 16 18 C -0.19 -2.89 9.01 -39.52 -0.36 -3.24 16 19 C 0.11 1.83 6.71 -38.91 -0.26 1.57 16 20 O -0.30 -4.32 9.44 -33.72 -0.32 -4.64 16 21 C 0.06 0.63 4.12 37.16 0.15 0.79 16 22 C -0.09 -0.82 3.16 -90.62 -0.29 -1.11 16 23 C -0.15 -1.28 9.09 37.16 0.34 -0.95 16 24 C -0.15 -0.99 9.19 37.16 0.34 -0.65 16 25 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.06 0.64 7.65 -51.93 -0.40 0.24 16 27 H 0.06 0.64 7.67 -51.93 -0.40 0.24 16 28 H 0.15 2.60 5.87 -52.49 -0.31 2.29 16 29 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 30 H 0.15 2.85 7.60 -52.49 -0.40 2.45 16 31 H 0.14 1.70 6.27 -52.49 -0.33 1.37 16 32 H 0.06 0.63 7.65 -51.93 -0.40 0.23 16 33 H 0.06 0.61 7.65 -51.93 -0.40 0.22 16 34 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.06 0.68 7.82 -51.94 -0.41 0.27 16 37 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 39 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.06 0.38 8.14 -51.92 -0.42 -0.04 16 LS Contribution 343.98 15.07 5.18 5.18 Total: -1.00 -33.49 343.98 -5.93 -39.42 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -5.49 Total: 0.79 kcal Atomic # 6 Polarization: -5.74 SS G_CDS: -0.20 Total: -5.94 kcal Atomic # 7 Polarization: -24.70 SS G_CDS: 0.76 Total: -23.94 kcal Atomic # 8 Polarization: -30.40 SS G_CDS: -1.17 Total: -31.57 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.49 -5.93 -39.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773839457.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.275 kcal (2) G-P(sol) polarization free energy of solvation -33.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds