Wall clock time and date at job start Tue Mar 31 2020 06:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36001 * 117.00304 * 2 1 4 4 C 1.38106 * 119.99369 * 359.72227 * 3 2 1 5 5 C 1.39830 * 119.83820 * 179.76807 * 4 3 2 6 6 C 1.47416 * 120.07677 * 180.23441 * 5 4 3 7 7 O 1.21545 * 120.00345 * 0.29478 * 6 5 4 8 8 O 1.34776 * 120.00006 * 180.30045 * 6 5 4 9 9 C 1.34858 * 116.99865 * 179.97438 * 8 6 5 10 10 H 1.07995 * 120.00377 * 0.02562 * 9 8 6 11 11 C 1.38805 * 119.99534 * 179.97438 * 9 8 6 12 12 N 1.31421 * 119.99896 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99544 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47286 * 60.00413 * 13 11 9 15 15 H 1.48500 * 109.46876 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.47113 * 299.99714 * 13 11 9 17 17 C 1.39800 * 119.84247 * 0.53394 * 5 4 3 18 18 C 1.37760 * 119.99493 * 359.72125 * 17 5 4 19 19 C 1.38865 * 120.15758 * 0.02562 * 18 17 5 20 20 O 1.35783 * 119.92120 * 179.97438 * 19 18 17 21 21 C 1.42905 * 116.99934 * 0.02562 * 20 19 18 22 22 C 1.53005 * 109.46978 * 179.97438 * 21 20 19 23 23 C 1.53001 * 109.47000 * 64.99869 * 22 21 20 24 24 C 1.52997 * 109.46932 * 185.00498 * 22 21 20 25 25 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46938 * 59.99841 * 1 2 3 27 27 H 1.09004 * 109.46926 * 299.99962 * 1 2 3 28 28 H 1.08000 * 120.08410 * 0.02840 * 4 3 2 29 29 H 0.97007 * 119.99901 * 179.97438 * 12 11 9 30 30 H 1.07999 * 119.99916 * 179.70124 * 17 5 4 31 31 H 1.07992 * 119.92180 * 179.97438 * 18 17 5 32 32 H 1.08991 * 109.47137 * 299.99922 * 21 20 19 33 33 H 1.08998 * 109.46991 * 60.00002 * 21 20 19 34 34 H 1.09004 * 109.46682 * 304.99718 * 22 21 20 35 35 H 1.09002 * 109.46899 * 179.97438 * 23 22 21 36 36 H 1.08989 * 109.47585 * 299.99948 * 23 22 21 37 37 H 1.09004 * 109.46804 * 60.00555 * 23 22 21 38 38 H 1.08998 * 109.47728 * 59.99875 * 24 22 21 39 39 H 1.08998 * 109.47188 * 180.02562 * 24 22 21 40 40 H 1.09010 * 109.46916 * 299.99567 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2943 2.3700 -0.0058 5 6 1.9325 3.6141 -0.0009 6 6 1.1347 4.8537 -0.0018 7 8 -0.0793 4.7951 -0.0014 8 8 1.7515 6.0521 -0.0032 9 6 0.9633 7.1463 -0.0045 10 1 -0.1112 7.0378 -0.0040 11 6 1.5331 8.4120 -0.0054 12 7 2.8407 8.5439 -0.0045 13 14 0.4413 9.9277 -0.0065 14 1 -0.4160 9.9211 1.2060 15 1 1.2880 11.1476 -0.0068 16 1 -0.4160 9.9193 -1.2191 17 6 3.3290 3.6796 -0.0014 18 6 4.0728 2.5201 -0.0010 19 6 3.4389 1.2846 -0.0005 20 8 4.1768 0.1447 -0.0006 21 6 5.5982 0.2921 -0.0006 22 6 6.2542 -1.0902 -0.0001 23 6 5.9221 -1.8128 -1.3072 24 6 7.7710 -0.9348 0.1258 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 0.2157 2.3150 -0.0099 29 1 3.2389 9.4285 -0.0055 30 1 3.8246 4.6392 -0.0025 31 1 5.1515 2.5721 -0.0018 32 1 5.9066 0.8406 -0.8905 33 1 5.9066 0.8405 0.8894 34 1 5.8774 -1.6708 0.8420 35 1 6.3898 -2.7974 -1.3070 36 1 4.8416 -1.9235 -1.3968 37 1 6.2990 -1.2321 -2.1492 38 1 8.0076 -0.4201 1.0570 39 1 8.2384 -1.9195 0.1257 40 1 8.1479 -0.3541 -0.7163 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000773839457.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:43 Heat of formation + Delta-G solvation = -159.535290 kcal Electronic energy + Delta-G solvation = -23181.302670 eV Core-core repulsion = 19540.365505 eV Total energy + Delta-G solvation = -3640.937165 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.83061 -40.87099 -39.73283 -38.06279 -37.17068 -36.11402 -34.34475 -31.60023 -31.40729 -28.56824 -28.00346 -27.73019 -27.25661 -24.69741 -23.37704 -22.09629 -21.00020 -19.93554 -19.80297 -18.90632 -17.84930 -17.39872 -17.26525 -16.71654 -16.62663 -16.44143 -16.20492 -15.91603 -15.55816 -15.10067 -14.82325 -14.43674 -14.12132 -13.75654 -13.63833 -13.50269 -13.46726 -13.15966 -12.95999 -12.54893 -12.45703 -12.39015 -12.23394 -12.17140 -12.04948 -12.03273 -11.98097 -11.58629 -11.50130 -11.18921 -10.72673 -9.93363 -8.99552 -8.58245 -6.35107 -0.30952 0.20733 1.33633 1.37480 1.49682 1.72154 2.02590 2.09663 2.23143 2.63599 2.67398 3.00909 3.62901 3.86923 3.87985 3.93556 4.02100 4.13440 4.19269 4.23740 4.35527 4.45951 4.47887 4.51656 4.57733 4.70001 4.71360 4.83581 4.96829 5.02423 5.04990 5.08753 5.19206 5.23831 5.34781 5.37233 5.43379 5.47087 5.78234 5.99602 6.45749 6.56667 6.85982 7.69113 8.61973 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.020203 B = 0.003450 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.606299 B = 8112.984456 C = 9385.865753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.315 6.315 3 C 0.082 3.918 4 C -0.120 4.120 5 C -0.123 4.123 6 C 0.436 3.564 7 O -0.583 6.583 8 O -0.229 6.229 9 C -0.422 4.422 10 H 0.083 0.917 11 C -0.001 4.001 12 N -0.895 5.895 13 Si 1.019 2.981 14 H -0.262 1.262 15 H -0.257 1.257 16 H -0.261 1.261 17 C -0.063 4.063 18 C -0.172 4.172 19 C 0.131 3.869 20 O -0.306 6.306 21 C 0.046 3.954 22 C -0.091 4.091 23 C -0.147 4.147 24 C -0.142 4.142 25 H 0.131 0.869 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.146 0.854 29 H 0.281 0.719 30 H 0.134 0.866 31 H 0.174 0.826 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.045 0.955 37 H 0.057 0.943 38 H 0.063 0.937 39 H 0.073 0.927 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.240 -18.735 -0.303 20.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.229 6.229 3 C 0.037 3.963 4 C -0.139 4.139 5 C -0.125 4.125 6 C 0.286 3.714 7 O -0.483 6.483 8 O -0.137 6.137 9 C -0.498 4.498 10 H 0.101 0.899 11 C -0.202 4.202 12 N -0.531 5.531 13 Si 0.837 3.163 14 H -0.186 1.186 15 H -0.181 1.181 16 H -0.186 1.186 17 C -0.082 4.082 18 C -0.191 4.191 19 C 0.084 3.916 20 O -0.219 6.219 21 C -0.028 4.028 22 C -0.110 4.110 23 C -0.204 4.204 24 C -0.200 4.200 25 H 0.149 0.851 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.163 0.837 29 H 0.091 0.909 30 H 0.152 0.848 31 H 0.191 0.809 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.087 0.913 36 H 0.064 0.936 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.092 0.908 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 8.161 -18.978 -0.305 20.660 hybrid contribution -0.895 1.216 0.002 1.510 sum 7.266 -17.762 -0.304 19.193 Atomic orbital electron populations 1.23366 0.76760 1.05833 1.01844 1.86128 1.22884 1.24577 1.89280 1.17987 0.89482 0.84940 1.03910 1.21038 1.00865 0.89549 1.02471 1.18902 0.93933 0.89866 1.09771 1.21544 0.86647 0.85536 0.77648 1.90565 1.16542 1.88383 1.52838 1.83916 1.40134 1.13467 1.76138 1.21478 0.90935 0.82455 1.54913 0.89949 1.26570 0.98249 1.00924 0.94447 1.70045 1.11245 1.26061 1.45764 0.84672 0.77167 0.74619 0.79819 1.18601 1.18067 1.18585 1.21266 0.91781 0.99713 0.95397 1.21229 1.01851 0.89238 1.06751 1.18495 0.88067 0.86622 0.98396 1.86100 1.20411 1.27565 1.87851 1.23352 0.76601 1.00106 1.02768 1.21136 0.96435 0.93644 0.99740 1.21818 1.01347 1.00764 0.96481 1.21772 0.92324 1.03208 1.02668 0.85073 0.92487 0.92476 0.83686 0.90915 0.84818 0.80872 0.90735 0.90582 0.90471 0.91300 0.93605 0.92397 0.91784 0.90786 0.91811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.81 113.37 1.11 1.47 16 2 O -0.31 -9.23 10.28 -79.55 -0.82 -10.05 16 3 C 0.08 2.71 6.69 22.53 0.15 2.86 16 4 C -0.12 -4.51 8.58 22.62 0.19 -4.31 16 5 C -0.12 -5.38 5.87 -20.10 -0.12 -5.50 16 6 C 0.44 23.90 7.83 70.24 0.55 24.45 16 7 O -0.58 -34.05 15.59 19.69 0.31 -33.75 16 8 O -0.23 -13.94 8.98 10.85 0.10 -13.84 16 9 C -0.42 -26.15 9.65 67.96 0.66 -25.49 16 10 H 0.08 5.16 6.86 -2.91 -0.02 5.14 16 11 C 0.00 -0.04 5.50 84.89 0.47 0.43 16 12 N -0.89 -52.45 13.67 21.63 0.30 -52.15 16 13 Si 1.02 43.40 29.55 68.60 2.03 45.43 16 14 H -0.26 -10.75 7.11 99.48 0.71 -10.05 16 15 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 16 H -0.26 -10.74 7.11 99.48 0.71 -10.04 16 17 C -0.06 -2.37 9.61 22.53 0.22 -2.16 16 18 C -0.17 -5.04 9.01 22.31 0.20 -4.84 16 19 C 0.13 3.95 6.71 22.71 0.15 4.10 16 20 O -0.31 -7.98 9.44 -77.09 -0.73 -8.71 16 21 C 0.05 0.84 4.12 71.98 0.30 1.14 16 22 C -0.09 -1.34 3.16 -10.79 -0.03 -1.37 16 23 C -0.15 -2.22 9.09 71.98 0.65 -1.57 16 24 C -0.14 -1.48 9.19 71.98 0.66 -0.81 16 25 H 0.13 1.96 8.14 -2.39 -0.02 1.94 16 26 H 0.06 1.25 7.65 -2.39 -0.02 1.23 16 27 H 0.06 1.25 7.67 -2.38 -0.02 1.23 16 28 H 0.15 5.33 5.87 -2.91 -0.02 5.32 16 29 H 0.28 14.89 8.31 -92.70 -0.77 14.12 16 30 H 0.13 5.38 7.60 -2.91 -0.02 5.36 16 31 H 0.17 3.73 6.27 -2.91 -0.02 3.71 16 32 H 0.07 1.22 7.65 -2.39 -0.02 1.20 16 33 H 0.08 1.22 7.65 -2.39 -0.02 1.20 16 34 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.04 0.87 7.82 -2.39 -0.02 0.85 16 37 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 Total: -1.00 -75.52 343.98 7.39 -68.13 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: 1.05 Total: 16.55 kcal Atomic # 6 Polarization: -16.77 SS G_CDS: 5.16 Total: -11.61 kcal Atomic # 7 Polarization: -52.45 SS G_CDS: 0.30 Total: -52.15 kcal Atomic # 8 Polarization: -65.21 SS G_CDS: -1.14 Total: -66.35 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -75.52 7.39 -68.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773839457.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.403 kcal (2) G-P(sol) polarization free energy of solvation -75.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds