Wall clock time and date at job start Tue Mar 31 2020 06:33:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35909 * 116.99932 * 2 1 4 4 C 1.38478 * 119.95246 * 359.97438 * 3 2 1 5 5 C 1.39602 * 119.90167 * 180.02562 * 4 3 2 6 6 C 1.47693 * 120.10539 * 179.97438 * 5 4 3 7 7 O 1.21507 * 119.99758 * 0.02562 * 6 5 4 8 8 O 1.34729 * 119.99905 * 180.02562 * 6 5 4 9 9 C 1.34854 * 116.99795 * 180.02562 * 8 6 5 10 10 H 1.07999 * 120.00010 * 0.02562 * 9 8 6 11 11 C 1.38812 * 119.99705 * 179.97438 * 9 8 6 12 12 N 1.31414 * 119.99850 * 180.02562 * 11 9 8 13 13 Si 1.86803 * 120.00216 * 359.97438 * 11 9 8 14 14 H 1.48501 * 109.46712 * 90.00052 * 13 11 9 15 15 H 1.48499 * 109.46916 * 209.99467 * 13 11 9 16 16 H 1.48492 * 109.46909 * 330.00070 * 13 11 9 17 17 C 1.39603 * 119.79475 * 0.25664 * 5 4 3 18 18 C 1.38489 * 119.89417 * 359.48702 * 17 5 4 19 19 O 1.35911 * 119.94800 * 180.23067 * 18 17 5 20 20 C 1.42897 * 116.99897 * 0.28277 * 19 18 17 21 21 C 1.38746 * 119.94421 * 180.02562 * 3 2 1 22 22 C 1.50695 * 119.90204 * 359.95629 * 21 3 2 23 23 C 1.53003 * 109.47518 * 119.99784 * 22 21 3 24 24 C 1.53002 * 109.47264 * 240.00315 * 22 21 3 25 25 H 1.08996 * 109.47612 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47192 * 300.00378 * 1 2 3 27 27 H 1.09003 * 109.46817 * 59.99505 * 1 2 3 28 28 H 1.08005 * 120.04988 * 0.04385 * 4 3 2 29 29 H 0.96996 * 120.00334 * 180.02562 * 12 11 9 30 30 H 1.07998 * 120.05744 * 179.72769 * 17 5 4 31 31 H 1.09001 * 109.47269 * 299.99740 * 20 19 18 32 32 H 1.09003 * 109.47482 * 60.00073 * 20 19 18 33 33 H 1.09006 * 109.47273 * 179.97438 * 20 19 18 34 34 H 1.09008 * 109.47113 * 359.97438 * 22 21 3 35 35 H 1.08994 * 109.47014 * 180.02562 * 23 22 21 36 36 H 1.08997 * 109.46910 * 300.00217 * 23 22 21 37 37 H 1.09008 * 109.46802 * 59.99964 * 23 22 21 38 38 H 1.08995 * 109.47569 * 59.99445 * 24 22 21 39 39 H 1.09003 * 109.47261 * 180.02562 * 24 22 21 40 40 H 1.09005 * 109.46996 * 299.99385 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2909 2.3717 -0.0005 5 6 1.9258 3.6150 -0.0011 6 6 1.1247 4.8558 -0.0022 7 8 -0.0888 4.7955 -0.0022 8 8 1.7397 6.0546 -0.0033 9 6 0.9500 7.1477 -0.0037 10 1 -0.1244 7.0377 -0.0029 11 6 1.5180 8.4143 -0.0043 12 7 0.7485 9.4796 -0.0042 13 14 3.3763 8.6045 -0.0036 14 1 3.8693 8.6541 -1.4036 15 1 3.7449 9.8616 0.6957 16 1 3.9919 7.4492 0.6973 17 6 3.3202 3.6819 -0.0065 18 6 4.0671 2.5157 -0.0006 19 8 5.4247 2.5795 -0.0011 20 6 6.0129 3.8818 -0.0016 21 6 3.4317 1.2823 -0.0005 22 6 4.2491 0.0162 -0.0001 23 6 5.1312 -0.0218 -1.2497 24 6 5.1320 -0.0204 1.2489 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 0.2123 2.3152 -0.0002 29 1 1.1454 10.3646 -0.0050 30 1 3.8157 4.6414 -0.0114 31 1 5.6939 4.4242 -0.8917 32 1 5.6946 4.4247 0.8883 33 1 7.0991 3.7900 -0.0016 34 1 3.5827 -0.8465 0.0011 35 1 5.7220 -0.9378 -1.2495 36 1 4.5021 0.0042 -2.1394 37 1 5.7975 0.8409 -1.2504 38 1 4.5037 0.0067 2.1390 39 1 5.7236 -0.9359 1.2489 40 1 5.7984 0.8422 1.2481 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000781296343.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:36 Heat of formation + Delta-G solvation = -133.894336 kcal Electronic energy + Delta-G solvation = -24241.033871 eV Core-core repulsion = 20601.208582 eV Total energy + Delta-G solvation = -3639.825290 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.74619 -39.13629 -38.96449 -36.38912 -35.63768 -34.90308 -32.43818 -30.16562 -29.45286 -27.79879 -27.01394 -26.94892 -25.73667 -23.74909 -21.72594 -20.74226 -20.18864 -18.28164 -18.02848 -17.06474 -16.35745 -16.02602 -15.92812 -15.53706 -15.49277 -15.08828 -14.74096 -14.42784 -14.08345 -13.95265 -13.32219 -13.20608 -13.05961 -12.53396 -12.36580 -12.29365 -12.00616 -11.85704 -11.78462 -11.48548 -11.44748 -11.38590 -11.02294 -10.74946 -10.71435 -10.55132 -10.36125 -10.33021 -9.81378 -9.31238 -8.79337 -8.20461 -8.03011 -6.49675 -4.20388 1.03386 1.54654 2.92014 3.07536 3.14829 3.24314 3.29906 3.65172 3.97612 4.12012 4.13815 4.74696 4.92827 5.02378 5.03571 5.10056 5.19741 5.24997 5.27855 5.31961 5.33463 5.39405 5.52469 5.53709 5.59006 5.71847 5.74317 5.93054 6.00462 6.00544 6.12302 6.26232 6.36225 6.36869 6.50114 6.67404 6.70003 7.31168 7.43810 7.61672 7.92377 8.52146 8.87815 9.56976 10.58142 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.017145 B = 0.005266 C = 0.004145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.750738 B = 5316.356485 C = 6752.738106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.312 6.312 3 C 0.153 3.847 4 C -0.189 4.189 5 C -0.014 4.014 6 C 0.442 3.558 7 O -0.534 6.534 8 O -0.240 6.240 9 C -0.374 4.374 10 H 0.112 0.888 11 C 0.066 3.934 12 N -0.865 5.865 13 Si 0.903 3.097 14 H -0.271 1.271 15 H -0.279 1.279 16 H -0.259 1.259 17 C -0.198 4.198 18 C 0.156 3.844 19 O -0.305 6.305 20 C 0.019 3.981 21 C -0.130 4.130 22 C -0.037 4.037 23 C -0.144 4.144 24 C -0.145 4.145 25 H 0.099 0.901 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.143 0.857 29 H 0.282 0.718 30 H 0.143 0.857 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.099 0.901 34 H 0.081 0.919 35 H 0.051 0.949 36 H 0.050 0.950 37 H 0.068 0.932 38 H 0.050 0.950 39 H 0.051 0.949 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.022 -17.522 0.016 20.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.225 6.225 3 C 0.107 3.893 4 C -0.209 4.209 5 C -0.016 4.016 6 C 0.290 3.710 7 O -0.430 6.430 8 O -0.148 6.148 9 C -0.449 4.449 10 H 0.130 0.870 11 C -0.139 4.139 12 N -0.503 5.503 13 Si 0.728 3.272 14 H -0.196 1.196 15 H -0.205 1.205 16 H -0.183 1.183 17 C -0.218 4.218 18 C 0.111 3.889 19 O -0.218 6.218 20 C -0.076 4.076 21 C -0.131 4.131 22 C -0.055 4.055 23 C -0.202 4.202 24 C -0.202 4.202 25 H 0.117 0.883 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.160 0.840 29 H 0.092 0.908 30 H 0.160 0.840 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.118 0.882 34 H 0.099 0.901 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.087 0.913 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 9.930 -17.613 0.020 20.219 hybrid contribution 0.227 0.927 -0.009 0.954 sum 10.157 -16.686 0.012 19.534 Atomic orbital electron populations 1.23106 0.78088 1.03708 1.02112 1.86011 1.21481 1.26175 1.88830 1.18111 0.90674 0.84050 0.96446 1.21149 1.00971 0.90303 1.08438 1.18824 0.92229 0.91355 0.99197 1.20413 0.86395 0.83928 0.80277 1.90664 1.14869 1.87440 1.50037 1.83522 1.41007 1.14030 1.76237 1.20742 0.92460 0.80758 1.50921 0.87038 1.24578 1.00241 0.93544 0.95491 1.69584 1.36225 0.98232 1.46298 0.86240 0.83566 0.78288 0.79069 1.19610 1.20484 1.18329 1.21492 0.93812 0.98240 1.08223 1.18231 0.82532 0.92270 0.95912 1.86075 1.16692 1.30520 1.88524 1.23145 0.98686 0.83489 1.02238 1.18420 0.90192 0.93646 1.10869 1.19764 0.95778 0.94129 0.95860 1.21856 0.99567 1.01975 0.96759 1.21859 0.99559 1.01985 0.96767 0.88266 0.92284 0.92289 0.83969 0.90768 0.83961 0.92261 0.92249 0.88230 0.90083 0.92967 0.93133 0.91298 0.93129 0.92967 0.91303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.81 101.05 0.99 1.25 16 2 O -0.31 -4.18 9.24 -19.46 -0.18 -4.36 16 3 C 0.15 2.36 6.65 -39.31 -0.26 2.10 16 4 C -0.19 -3.32 8.58 -38.98 -0.33 -3.66 16 5 C -0.01 -0.29 5.87 -105.02 -0.62 -0.91 16 6 C 0.44 10.97 7.84 34.59 0.27 11.24 16 7 O -0.53 -14.54 15.59 -19.27 -0.30 -14.84 16 8 O -0.24 -6.37 7.82 -21.63 -0.17 -6.54 16 9 C -0.37 -11.02 10.11 30.94 0.31 -10.71 16 10 H 0.11 3.62 7.09 -52.49 -0.37 3.25 16 11 C 0.07 1.86 5.50 -17.52 -0.10 1.77 16 12 N -0.87 -25.10 13.96 55.49 0.77 -24.33 16 13 Si 0.90 20.70 28.62 -169.99 -4.86 15.84 16 14 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 15 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 16 H -0.26 -5.70 7.11 56.52 0.40 -5.30 16 17 C -0.20 -3.52 8.60 -38.98 -0.34 -3.85 16 18 C 0.16 2.40 6.27 -39.30 -0.25 2.15 16 19 O -0.30 -4.01 6.12 -19.46 -0.12 -4.13 16 20 C 0.02 0.21 9.81 101.05 0.99 1.20 16 21 C -0.13 -1.93 4.81 -104.25 -0.50 -2.43 16 22 C -0.04 -0.46 2.95 -91.77 -0.27 -0.73 16 23 C -0.14 -1.62 8.98 37.16 0.33 -1.29 16 24 C -0.14 -1.63 8.97 37.16 0.33 -1.29 16 25 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.06 0.61 7.66 -51.93 -0.40 0.21 16 27 H 0.06 0.61 7.66 -51.93 -0.40 0.21 16 28 H 0.14 2.43 5.87 -52.48 -0.31 2.13 16 29 H 0.28 7.43 8.31 -40.82 -0.34 7.09 16 30 H 0.14 2.51 5.83 -52.49 -0.31 2.21 16 31 H 0.06 0.66 7.64 -51.93 -0.40 0.26 16 32 H 0.06 0.67 7.67 -51.93 -0.40 0.27 16 33 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.08 1.00 6.97 -51.92 -0.36 0.63 16 35 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.81 6.12 -51.92 -0.32 0.49 16 38 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.81 6.12 -51.93 -0.32 0.49 16 LS Contribution 333.19 15.07 5.02 5.02 Total: -1.00 -32.28 333.19 -4.51 -36.80 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -5.25 Total: 1.70 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: 0.57 Total: -5.16 kcal Atomic # 7 Polarization: -25.10 SS G_CDS: 0.77 Total: -24.33 kcal Atomic # 8 Polarization: -29.11 SS G_CDS: -0.77 Total: -29.88 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -4.86 Total: 15.84 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.28 -4.51 -36.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781296343.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.098 kcal (2) G-P(sol) polarization free energy of solvation -32.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds