Wall clock time and date at job start Tue Mar 31 2020 06:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35909 * 116.99932 * 2 1 4 4 C 1.38478 * 119.95246 * 359.97438 * 3 2 1 5 5 C 1.39602 * 119.90167 * 180.02562 * 4 3 2 6 6 C 1.47693 * 120.10539 * 179.97438 * 5 4 3 7 7 O 1.21507 * 119.99758 * 0.02562 * 6 5 4 8 8 O 1.34729 * 119.99905 * 180.02562 * 6 5 4 9 9 C 1.34854 * 116.99795 * 180.02562 * 8 6 5 10 10 H 1.07999 * 120.00010 * 0.02562 * 9 8 6 11 11 C 1.38812 * 119.99705 * 179.97438 * 9 8 6 12 12 N 1.31414 * 119.99850 * 180.02562 * 11 9 8 13 13 Si 1.86803 * 120.00216 * 359.97438 * 11 9 8 14 14 H 1.48501 * 109.46712 * 90.00052 * 13 11 9 15 15 H 1.48499 * 109.46916 * 209.99467 * 13 11 9 16 16 H 1.48492 * 109.46909 * 330.00070 * 13 11 9 17 17 C 1.39603 * 119.79475 * 0.25664 * 5 4 3 18 18 C 1.38489 * 119.89417 * 359.48702 * 17 5 4 19 19 O 1.35911 * 119.94800 * 180.23067 * 18 17 5 20 20 C 1.42897 * 116.99897 * 0.28277 * 19 18 17 21 21 C 1.38746 * 119.94421 * 180.02562 * 3 2 1 22 22 C 1.50695 * 119.90204 * 359.95629 * 21 3 2 23 23 C 1.53003 * 109.47518 * 119.99784 * 22 21 3 24 24 C 1.53002 * 109.47264 * 240.00315 * 22 21 3 25 25 H 1.08996 * 109.47612 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47192 * 300.00378 * 1 2 3 27 27 H 1.09003 * 109.46817 * 59.99505 * 1 2 3 28 28 H 1.08005 * 120.04988 * 0.04385 * 4 3 2 29 29 H 0.96996 * 120.00334 * 180.02562 * 12 11 9 30 30 H 1.07998 * 120.05744 * 179.72769 * 17 5 4 31 31 H 1.09001 * 109.47269 * 299.99740 * 20 19 18 32 32 H 1.09003 * 109.47482 * 60.00073 * 20 19 18 33 33 H 1.09006 * 109.47273 * 179.97438 * 20 19 18 34 34 H 1.09008 * 109.47113 * 359.97438 * 22 21 3 35 35 H 1.08994 * 109.47014 * 180.02562 * 23 22 21 36 36 H 1.08997 * 109.46910 * 300.00217 * 23 22 21 37 37 H 1.09008 * 109.46802 * 59.99964 * 23 22 21 38 38 H 1.08995 * 109.47569 * 59.99445 * 24 22 21 39 39 H 1.09003 * 109.47261 * 180.02562 * 24 22 21 40 40 H 1.09005 * 109.46996 * 299.99385 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2909 2.3717 -0.0005 5 6 1.9258 3.6150 -0.0011 6 6 1.1247 4.8558 -0.0022 7 8 -0.0888 4.7955 -0.0022 8 8 1.7397 6.0546 -0.0033 9 6 0.9500 7.1477 -0.0037 10 1 -0.1244 7.0377 -0.0029 11 6 1.5180 8.4143 -0.0043 12 7 0.7485 9.4796 -0.0042 13 14 3.3763 8.6045 -0.0036 14 1 3.8693 8.6541 -1.4036 15 1 3.7449 9.8616 0.6957 16 1 3.9919 7.4492 0.6973 17 6 3.3202 3.6819 -0.0065 18 6 4.0671 2.5157 -0.0006 19 8 5.4247 2.5795 -0.0011 20 6 6.0129 3.8818 -0.0016 21 6 3.4317 1.2823 -0.0005 22 6 4.2491 0.0162 -0.0001 23 6 5.1312 -0.0218 -1.2497 24 6 5.1320 -0.0204 1.2489 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 0.2123 2.3152 -0.0002 29 1 1.1454 10.3646 -0.0050 30 1 3.8157 4.6414 -0.0114 31 1 5.6939 4.4242 -0.8917 32 1 5.6946 4.4247 0.8883 33 1 7.0991 3.7900 -0.0016 34 1 3.5827 -0.8465 0.0011 35 1 5.7220 -0.9378 -1.2495 36 1 4.5021 0.0042 -2.1394 37 1 5.7975 0.8409 -1.2504 38 1 4.5037 0.0067 2.1390 39 1 5.7236 -0.9359 1.2489 40 1 5.7984 0.8422 1.2481 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000781296343.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:35 Heat of formation + Delta-G solvation = -153.691391 kcal Electronic energy + Delta-G solvation = -24241.892336 eV Core-core repulsion = 20601.208582 eV Total energy + Delta-G solvation = -3640.683755 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.04834 -41.04889 -40.04858 -37.81650 -37.24211 -36.27033 -34.59452 -31.43830 -30.70983 -28.82173 -28.24887 -27.86984 -27.39561 -25.26156 -22.92209 -22.33234 -21.34359 -20.29645 -19.70397 -18.46138 -17.69431 -17.33363 -17.09296 -16.99291 -16.68825 -16.61303 -16.48773 -15.99160 -15.47728 -14.94143 -14.65056 -14.39020 -14.27980 -14.15267 -14.00022 -13.57700 -13.23410 -13.13117 -12.85892 -12.74295 -12.51278 -12.50239 -12.38435 -12.35998 -11.94963 -11.92139 -11.76346 -11.69475 -11.52583 -11.18869 -10.90673 -9.44981 -9.30174 -8.62913 -6.48269 -0.43462 0.25166 1.28297 1.30646 1.48690 1.60076 1.84239 2.16136 2.24521 2.56078 2.62046 2.89324 3.55231 3.72895 3.81720 4.03371 4.09286 4.28980 4.35138 4.35472 4.37855 4.39672 4.42945 4.46622 4.71593 4.76444 4.78606 4.90400 4.95428 4.95832 5.13709 5.13764 5.19449 5.25822 5.29430 5.38472 5.50794 5.70599 5.80024 6.18044 6.27296 6.38074 6.70920 7.43807 8.49536 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.017145 B = 0.005266 C = 0.004145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.750738 B = 5316.356485 C = 6752.738106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.308 6.308 3 C 0.158 3.842 4 C -0.192 4.192 5 C -0.045 4.045 6 C 0.447 3.553 7 O -0.568 6.568 8 O -0.241 6.241 9 C -0.410 4.410 10 H 0.059 0.941 11 C 0.020 3.980 12 N -0.908 5.908 13 Si 0.978 3.022 14 H -0.255 1.255 15 H -0.261 1.261 16 H -0.245 1.245 17 C -0.199 4.199 18 C 0.164 3.836 19 O -0.296 6.296 20 C 0.009 3.991 21 C -0.120 4.120 22 C -0.038 4.038 23 C -0.141 4.141 24 C -0.142 4.142 25 H 0.135 0.865 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.139 0.861 29 H 0.293 0.707 30 H 0.142 0.858 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.136 0.864 34 H 0.086 0.914 35 H 0.074 0.926 36 H 0.044 0.956 37 H 0.064 0.936 38 H 0.044 0.956 39 H 0.074 0.926 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.615 -19.899 0.013 24.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.222 6.222 3 C 0.112 3.888 4 C -0.211 4.211 5 C -0.046 4.046 6 C 0.296 3.704 7 O -0.466 6.466 8 O -0.150 6.150 9 C -0.485 4.485 10 H 0.077 0.923 11 C -0.181 4.181 12 N -0.547 5.547 13 Si 0.796 3.204 14 H -0.179 1.179 15 H -0.185 1.185 16 H -0.168 1.168 17 C -0.218 4.218 18 C 0.118 3.882 19 O -0.209 6.209 20 C -0.085 4.085 21 C -0.122 4.122 22 C -0.056 4.056 23 C -0.198 4.198 24 C -0.199 4.199 25 H 0.153 0.847 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.156 0.844 29 H 0.103 0.897 30 H 0.160 0.840 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.154 0.846 34 H 0.104 0.896 35 H 0.093 0.907 36 H 0.063 0.937 37 H 0.083 0.917 38 H 0.063 0.937 39 H 0.093 0.907 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 13.504 -20.007 0.017 24.138 hybrid contribution -0.956 1.433 -0.010 1.723 sum 12.548 -18.574 0.007 22.415 Atomic orbital electron populations 1.23406 0.76399 1.06058 1.01945 1.86033 1.23117 1.24686 1.88321 1.18132 0.91025 0.84032 0.95634 1.21166 1.01100 0.90328 1.08522 1.18582 0.92967 0.89549 1.03527 1.21469 0.86627 0.84792 0.77531 1.90629 1.16786 1.88018 1.51126 1.83522 1.40131 1.13877 1.77449 1.20399 0.90707 0.82760 1.54669 0.92327 1.25612 1.06506 0.92247 0.93784 1.69674 1.39063 0.99151 1.46786 0.85167 0.75633 0.79351 0.80214 1.17946 1.18533 1.16820 1.21480 0.92789 0.99356 1.08176 1.18206 0.83566 0.91504 0.94904 1.86117 1.14946 1.31942 1.87918 1.23450 1.00630 0.82436 1.01989 1.18882 0.90287 0.94798 1.08239 1.19894 0.95957 0.92582 0.97181 1.21835 0.99333 1.02996 0.95682 1.21837 0.99326 1.03004 0.95695 0.84666 0.92491 0.92493 0.84351 0.89727 0.84017 0.92435 0.92594 0.84607 0.89616 0.90745 0.93701 0.91659 0.93709 0.90741 0.91673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.81 113.37 1.11 1.42 16 2 O -0.31 -7.62 9.24 -92.53 -0.86 -8.47 16 3 C 0.16 4.66 6.65 22.45 0.15 4.81 16 4 C -0.19 -6.79 8.58 22.66 0.19 -6.59 16 5 C -0.04 -1.83 5.87 -20.12 -0.12 -1.95 16 6 C 0.45 23.29 7.84 70.32 0.55 23.84 16 7 O -0.57 -33.06 15.59 19.81 0.31 -32.75 16 8 O -0.24 -13.35 7.82 11.37 0.09 -13.26 16 9 C -0.41 -25.64 10.11 67.96 0.69 -24.95 16 10 H 0.06 4.17 7.09 -2.91 -0.02 4.15 16 11 C 0.02 1.14 5.50 84.89 0.47 1.60 16 12 N -0.91 -54.52 13.96 21.63 0.30 -54.22 16 13 Si 0.98 42.37 28.62 68.60 1.96 44.33 16 14 H -0.26 -10.38 7.11 99.48 0.71 -9.68 16 15 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 16 H -0.24 -9.95 7.11 99.48 0.71 -9.24 16 17 C -0.20 -6.92 8.60 22.66 0.19 -6.72 16 18 C 0.16 4.73 6.27 22.45 0.14 4.87 16 19 O -0.30 -6.89 6.12 -92.55 -0.57 -7.46 16 20 C 0.01 0.17 9.81 113.37 1.11 1.28 16 21 C -0.12 -3.31 4.81 -19.62 -0.09 -3.40 16 22 C -0.04 -0.81 2.95 -11.54 -0.03 -0.84 16 23 C -0.14 -2.66 8.98 71.98 0.65 -2.02 16 24 C -0.14 -2.67 8.97 71.98 0.65 -2.02 16 25 H 0.14 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.06 1.12 7.66 -2.39 -0.02 1.10 16 27 H 0.06 1.12 7.66 -2.39 -0.02 1.10 16 28 H 0.14 4.90 5.87 -2.91 -0.02 4.88 16 29 H 0.29 15.70 8.31 -92.71 -0.77 14.93 16 30 H 0.14 4.89 5.83 -2.91 -0.02 4.87 16 31 H 0.06 1.13 7.64 -2.39 -0.02 1.11 16 32 H 0.06 1.11 7.67 -2.39 -0.02 1.10 16 33 H 0.14 1.57 8.14 -2.38 -0.02 1.55 16 34 H 0.09 1.80 6.97 -2.38 -0.02 1.78 16 35 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.06 1.29 6.12 -2.38 -0.01 1.27 16 38 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.06 1.29 6.12 -2.38 -0.01 1.27 16 Total: -1.00 -74.55 333.19 7.96 -66.59 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: 1.06 Total: 15.91 kcal Atomic # 6 Polarization: -16.33 SS G_CDS: 5.65 Total: -10.67 kcal Atomic # 7 Polarization: -54.52 SS G_CDS: 0.30 Total: -54.22 kcal Atomic # 8 Polarization: -60.93 SS G_CDS: -1.02 Total: -61.95 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 1.96 Total: 44.33 kcal Total: -74.55 7.96 -66.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781296343.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.100 kcal (2) G-P(sol) polarization free energy of solvation -74.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds