Wall clock time and date at job start Tue Mar 31 2020 07:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.36002 * 116.99631 * 2 1 4 4 C 1.38559 * 120.07412 * 0.28256 * 3 2 1 5 5 C 1.38247 * 119.99995 * 180.27568 * 4 3 2 6 6 C 1.38254 * 120.14265 * 359.71512 * 5 4 3 7 7 C 1.50703 * 119.92677 * 180.02562 * 6 5 4 8 8 C 1.52994 * 109.47518 * 269.98689 * 7 6 5 9 9 H 1.09001 * 109.46856 * 304.99443 * 8 7 6 10 10 C 1.52994 * 109.47283 * 64.99633 * 8 7 6 11 11 C 1.50699 * 109.47051 * 184.99902 * 8 7 6 12 12 O 1.21209 * 120.00049 * 0.02562 * 11 8 7 13 13 O 1.34317 * 120.00223 * 179.97438 * 11 8 7 14 14 C 1.34912 * 116.99910 * 179.97438 * 13 11 8 15 15 H 1.08001 * 120.00441 * 0.02562 * 14 13 11 16 16 C 1.38760 * 119.99723 * 179.97438 * 14 13 11 17 17 N 1.31436 * 119.99742 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00033 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47001 * 60.00050 * 18 16 14 20 20 H 1.48492 * 109.47122 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47318 * 300.00544 * 18 16 14 22 22 C 1.38239 * 120.14652 * 0.02562 * 6 5 4 23 23 C 1.38566 * 120.00200 * 359.97438 * 22 6 5 24 24 O 1.35991 * 120.07262 * 180.02562 * 23 22 6 25 25 C 1.42903 * 117.00364 * 0.02562 * 24 23 22 26 26 H 1.09001 * 109.46853 * 299.99631 * 1 2 3 27 27 H 1.08996 * 109.47505 * 59.99406 * 1 2 3 28 28 H 1.09000 * 109.46632 * 179.97438 * 1 2 3 29 29 H 1.08001 * 120.00429 * 359.97438 * 4 3 2 30 30 H 1.07995 * 119.93291 * 179.69850 * 5 4 3 31 31 H 1.08998 * 109.46828 * 29.98990 * 7 6 5 32 32 H 1.09008 * 109.46819 * 149.97862 * 7 6 5 33 33 H 1.09000 * 109.47120 * 179.97438 * 10 8 7 34 34 H 1.08997 * 109.47484 * 299.99981 * 10 8 7 35 35 H 1.08997 * 109.47167 * 60.00586 * 10 8 7 36 36 H 0.96999 * 119.99746 * 179.97438 * 17 16 14 37 37 H 1.08008 * 120.00118 * 180.02562 * 22 6 5 38 38 H 1.09002 * 109.47382 * 179.97438 * 25 24 23 39 39 H 1.09001 * 109.46938 * 59.99845 * 25 24 23 40 40 H 1.09004 * 109.46926 * 299.99967 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2932 2.3748 0.0059 5 6 1.9223 3.6058 0.0001 6 6 3.3028 3.6799 -0.0056 7 6 3.9835 5.0245 -0.0113 8 6 4.2084 5.4762 -1.4556 9 1 4.7612 4.7070 -1.9949 10 6 2.8567 5.7040 -2.1351 11 6 4.9973 6.7602 -1.4632 12 8 5.3455 7.2638 -0.4172 13 8 5.3154 7.3461 -2.6293 14 6 6.0222 8.4935 -2.5654 15 1 6.3066 8.9000 -1.6061 16 6 6.3848 9.1508 -3.7325 17 7 6.0391 8.6558 -4.9000 18 14 7.3628 10.7398 -3.6442 19 1 8.6554 10.4879 -2.9579 20 1 7.6206 11.2394 -5.0186 21 1 6.5895 11.7556 -2.8857 22 6 4.0602 2.5235 -0.0061 23 6 3.4359 1.2864 -0.0003 24 8 4.1795 0.1478 -0.0003 25 6 5.6003 0.3008 -0.0058 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3632 -1.0277 -0.0005 29 1 0.2146 2.3197 0.0101 30 1 1.3341 4.5116 -0.0002 31 1 3.3556 5.7517 0.5033 32 1 4.9436 4.9477 0.4992 33 1 3.0170 6.0263 -3.1639 34 1 2.2861 4.7754 -2.1296 35 1 2.3040 6.4733 -1.5957 36 1 6.2922 9.1155 -5.7158 37 1 5.1385 2.5841 -0.0102 38 1 6.0716 -0.6820 -0.0047 39 1 5.9098 0.8527 0.8817 40 1 5.9033 0.8485 -0.8983 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000781313175.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:30:17 Heat of formation + Delta-G solvation = -138.260875 kcal Electronic energy + Delta-G solvation = -23299.182926 eV Core-core repulsion = 19659.168289 eV Total energy + Delta-G solvation = -3640.014637 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.67067 -39.16649 -38.51236 -37.49644 -35.38064 -33.89964 -32.11283 -30.54855 -30.30315 -27.74259 -27.35340 -26.02001 -25.51164 -23.14331 -22.20202 -21.23217 -19.28815 -18.42597 -17.69319 -17.19311 -16.74344 -16.42516 -16.14428 -15.34271 -14.99369 -14.83961 -14.73577 -14.52373 -14.40950 -13.91148 -13.65230 -13.27208 -12.93605 -12.55670 -12.40724 -12.14564 -11.98513 -11.72163 -11.45641 -11.31154 -11.27432 -11.19155 -11.07116 -10.92944 -10.65657 -10.54157 -10.44664 -10.31524 -9.75539 -8.94985 -8.69431 -8.55223 -7.77818 -6.38666 -4.06447 1.24135 1.39671 3.14313 3.16242 3.19458 3.20245 3.23513 3.57105 3.64017 3.97737 4.51586 4.69061 4.83736 4.92464 4.97874 5.05031 5.10211 5.11977 5.13799 5.24217 5.28237 5.31453 5.41399 5.42027 5.45019 5.61361 5.72948 6.00972 6.07092 6.18593 6.20731 6.24463 6.46938 6.58877 6.65643 6.72600 6.90678 6.95554 7.41755 7.50336 7.98225 8.74562 9.10276 9.90017 10.79358 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.027306 B = 0.003089 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.156036 B = 9061.752182 C = 9448.799999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.310 6.310 3 C 0.088 3.912 4 C -0.170 4.170 5 C -0.110 4.110 6 C -0.065 4.065 7 C -0.061 4.061 8 C -0.067 4.067 9 H 0.093 0.907 10 C -0.143 4.143 11 C 0.401 3.599 12 O -0.558 6.558 13 O -0.212 6.212 14 C -0.383 4.383 15 H 0.094 0.906 16 C 0.042 3.958 17 N -0.866 5.866 18 Si 0.942 3.058 19 H -0.270 1.270 20 H -0.279 1.279 21 H -0.270 1.270 22 C -0.167 4.167 23 C 0.100 3.900 24 O -0.310 6.310 25 C 0.025 3.975 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.097 0.903 29 H 0.133 0.867 30 H 0.129 0.871 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.062 0.938 35 H 0.056 0.944 36 H 0.269 0.731 37 H 0.136 0.864 38 H 0.098 0.902 39 H 0.055 0.945 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.963 -15.973 8.060 20.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.224 6.224 3 C 0.043 3.957 4 C -0.189 4.189 5 C -0.129 4.129 6 C -0.066 4.066 7 C -0.098 4.098 8 C -0.086 4.086 9 H 0.111 0.889 10 C -0.200 4.200 11 C 0.248 3.752 12 O -0.456 6.456 13 O -0.119 6.119 14 C -0.459 4.459 15 H 0.111 0.889 16 C -0.162 4.162 17 N -0.503 5.503 18 Si 0.767 3.233 19 H -0.195 1.195 20 H -0.204 1.204 21 H -0.195 1.195 22 C -0.186 4.186 23 C 0.054 3.946 24 O -0.223 6.223 25 C -0.070 4.070 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.115 0.885 29 H 0.151 0.849 30 H 0.147 0.853 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.090 0.910 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.154 0.846 38 H 0.116 0.884 39 H 0.073 0.927 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.820 -16.174 8.069 20.112 hybrid contribution 0.485 1.090 -0.043 1.194 sum -8.335 -15.084 8.026 19.011 Atomic orbital electron populations 1.23028 0.78884 1.03693 1.01183 1.86152 1.20751 1.26124 1.89349 1.18203 0.89085 0.85109 1.03306 1.21026 0.99755 0.91467 1.06676 1.20828 0.93929 0.97084 1.01020 1.19660 0.93351 0.94706 0.98841 1.20417 1.01330 0.92242 0.95835 1.20672 0.97026 0.94178 0.96760 0.88886 1.21805 0.94893 1.01573 1.01752 1.23152 0.81565 0.87155 0.83348 1.90541 1.55502 1.65843 1.33706 1.83878 1.61061 1.36125 1.30865 1.21165 1.31914 0.98020 0.94836 0.88853 1.25314 0.97442 0.99325 0.94098 1.69982 1.43815 1.39126 0.97388 0.85766 0.79697 0.80299 0.77542 1.19530 1.20403 1.19522 1.21023 1.00542 0.90497 1.06545 1.18203 0.88183 0.86009 1.02177 1.86137 1.18673 1.28351 1.89162 1.23078 0.78630 1.03705 1.01589 0.92854 0.92751 0.88465 0.84908 0.85300 0.90118 0.90144 0.90984 0.91935 0.92535 0.92088 0.84613 0.88353 0.92652 0.92439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.31 -3.88 10.28 -34.25 -0.35 -4.23 16 3 C 0.09 1.16 6.70 -39.12 -0.26 0.89 16 4 C -0.17 -1.95 9.04 -39.46 -0.36 -2.30 16 5 C -0.11 -1.35 7.95 -39.57 -0.31 -1.66 16 6 C -0.07 -0.89 4.71 -104.61 -0.49 -1.38 16 7 C -0.06 -0.95 4.18 -27.88 -0.12 -1.07 16 8 C -0.07 -1.22 2.82 -91.78 -0.26 -1.48 16 9 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 10 C -0.14 -2.35 8.69 37.15 0.32 -2.03 16 11 C 0.40 9.86 7.20 36.01 0.26 10.12 16 12 O -0.56 -14.88 15.16 -19.05 -0.29 -15.17 16 13 O -0.21 -6.09 9.65 -20.70 -0.20 -6.29 16 14 C -0.38 -11.40 9.65 30.93 0.30 -11.10 16 15 H 0.09 2.79 6.86 -52.49 -0.36 2.43 16 16 C 0.04 1.19 5.49 -17.53 -0.10 1.10 16 17 N -0.87 -25.48 13.67 55.48 0.76 -24.72 16 18 Si 0.94 21.43 29.55 -169.99 -5.02 16.40 16 19 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 20 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 21 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 22 C -0.17 -2.21 8.69 -39.46 -0.34 -2.56 16 23 C 0.10 1.37 6.70 -39.12 -0.26 1.10 16 24 O -0.31 -4.11 10.28 -34.22 -0.35 -4.46 16 25 C 0.03 0.24 9.81 101.05 0.99 1.23 16 26 H 0.05 0.35 7.65 -51.93 -0.40 -0.05 16 27 H 0.05 0.37 7.67 -51.93 -0.40 -0.03 16 28 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.13 1.15 6.30 -52.49 -0.33 0.82 16 30 H 0.13 1.39 8.03 -52.49 -0.42 0.97 16 31 H 0.08 1.27 8.08 -51.93 -0.42 0.85 16 32 H 0.08 1.30 7.90 -51.92 -0.41 0.89 16 33 H 0.07 1.31 8.11 -51.93 -0.42 0.89 16 34 H 0.06 0.86 6.27 -51.93 -0.33 0.54 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 37 H 0.14 1.62 6.30 -52.48 -0.33 1.29 16 38 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.05 0.47 7.66 -51.93 -0.40 0.07 16 40 H 0.06 0.52 7.66 -51.93 -0.40 0.12 16 LS Contribution 340.73 15.07 5.13 5.13 Total: -1.00 -34.93 340.73 -5.40 -40.33 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -5.44 Total: 0.93 kcal Atomic # 6 Polarization: -8.30 SS G_CDS: 0.36 Total: -7.94 kcal Atomic # 7 Polarization: -25.48 SS G_CDS: 0.76 Total: -24.72 kcal Atomic # 8 Polarization: -28.96 SS G_CDS: -1.19 Total: -30.15 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -34.93 -5.40 -40.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781313175.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.930 kcal (2) G-P(sol) polarization free energy of solvation -34.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds