Wall clock time and date at job start Tue Mar 31 2020 07:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.36002 * 116.99631 * 2 1 4 4 C 1.38559 * 120.07412 * 0.28256 * 3 2 1 5 5 C 1.38247 * 119.99995 * 180.27568 * 4 3 2 6 6 C 1.38254 * 120.14265 * 359.71512 * 5 4 3 7 7 C 1.50703 * 119.92677 * 180.02562 * 6 5 4 8 8 C 1.52994 * 109.47518 * 269.98689 * 7 6 5 9 9 H 1.09001 * 109.46856 * 304.99443 * 8 7 6 10 10 C 1.52994 * 109.47283 * 64.99633 * 8 7 6 11 11 C 1.50699 * 109.47051 * 184.99902 * 8 7 6 12 12 O 1.21209 * 120.00049 * 0.02562 * 11 8 7 13 13 O 1.34317 * 120.00223 * 179.97438 * 11 8 7 14 14 C 1.34912 * 116.99910 * 179.97438 * 13 11 8 15 15 H 1.08001 * 120.00441 * 0.02562 * 14 13 11 16 16 C 1.38760 * 119.99723 * 179.97438 * 14 13 11 17 17 N 1.31436 * 119.99742 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00033 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47001 * 60.00050 * 18 16 14 20 20 H 1.48492 * 109.47122 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47318 * 300.00544 * 18 16 14 22 22 C 1.38239 * 120.14652 * 0.02562 * 6 5 4 23 23 C 1.38566 * 120.00200 * 359.97438 * 22 6 5 24 24 O 1.35991 * 120.07262 * 180.02562 * 23 22 6 25 25 C 1.42903 * 117.00364 * 0.02562 * 24 23 22 26 26 H 1.09001 * 109.46853 * 299.99631 * 1 2 3 27 27 H 1.08996 * 109.47505 * 59.99406 * 1 2 3 28 28 H 1.09000 * 109.46632 * 179.97438 * 1 2 3 29 29 H 1.08001 * 120.00429 * 359.97438 * 4 3 2 30 30 H 1.07995 * 119.93291 * 179.69850 * 5 4 3 31 31 H 1.08998 * 109.46828 * 29.98990 * 7 6 5 32 32 H 1.09008 * 109.46819 * 149.97862 * 7 6 5 33 33 H 1.09000 * 109.47120 * 179.97438 * 10 8 7 34 34 H 1.08997 * 109.47484 * 299.99981 * 10 8 7 35 35 H 1.08997 * 109.47167 * 60.00586 * 10 8 7 36 36 H 0.96999 * 119.99746 * 179.97438 * 17 16 14 37 37 H 1.08008 * 120.00118 * 180.02562 * 22 6 5 38 38 H 1.09002 * 109.47382 * 179.97438 * 25 24 23 39 39 H 1.09001 * 109.46938 * 59.99845 * 25 24 23 40 40 H 1.09004 * 109.46926 * 299.99967 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2932 2.3748 0.0059 5 6 1.9223 3.6058 0.0001 6 6 3.3028 3.6799 -0.0056 7 6 3.9835 5.0245 -0.0113 8 6 4.2084 5.4762 -1.4556 9 1 4.7612 4.7070 -1.9949 10 6 2.8567 5.7040 -2.1351 11 6 4.9973 6.7602 -1.4632 12 8 5.3455 7.2638 -0.4172 13 8 5.3154 7.3461 -2.6293 14 6 6.0222 8.4935 -2.5654 15 1 6.3066 8.9000 -1.6061 16 6 6.3848 9.1508 -3.7325 17 7 6.0391 8.6558 -4.9000 18 14 7.3628 10.7398 -3.6442 19 1 8.6554 10.4879 -2.9579 20 1 7.6206 11.2394 -5.0186 21 1 6.5895 11.7556 -2.8857 22 6 4.0602 2.5235 -0.0061 23 6 3.4359 1.2864 -0.0003 24 8 4.1795 0.1478 -0.0003 25 6 5.6003 0.3008 -0.0058 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3632 -1.0277 -0.0005 29 1 0.2146 2.3197 0.0101 30 1 1.3341 4.5116 -0.0002 31 1 3.3556 5.7517 0.5033 32 1 4.9436 4.9477 0.4992 33 1 3.0170 6.0263 -3.1639 34 1 2.2861 4.7754 -2.1296 35 1 2.3040 6.4733 -1.5957 36 1 6.2922 9.1155 -5.7158 37 1 5.1385 2.5841 -0.0102 38 1 6.0716 -0.6820 -0.0047 39 1 5.9098 0.8527 0.8817 40 1 5.9033 0.8485 -0.8983 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000781313175.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:30:16 Heat of formation + Delta-G solvation = -159.610474 kcal Electronic energy + Delta-G solvation = -23300.108714 eV Core-core repulsion = 19659.168289 eV Total energy + Delta-G solvation = -3640.940425 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.64583 -41.07226 -39.38007 -38.64849 -37.29037 -35.37174 -34.27449 -31.61217 -31.24375 -28.67452 -28.06081 -27.64373 -27.10987 -24.70973 -23.11408 -22.42434 -20.93754 -19.86070 -19.34434 -18.54468 -17.89443 -17.66340 -17.03569 -16.87531 -16.53051 -16.25712 -16.11464 -15.68942 -15.40061 -15.13252 -15.01562 -14.73099 -14.16531 -13.82950 -13.63282 -13.40398 -13.12908 -13.08871 -12.92540 -12.73882 -12.40895 -12.35704 -12.18272 -12.07212 -12.05302 -12.01074 -11.97808 -11.91638 -11.58846 -10.90931 -10.69146 -9.67463 -8.74116 -8.53066 -6.33118 0.28680 0.41417 1.32144 1.33869 1.49706 1.65943 2.11498 2.36552 2.39227 2.61340 2.84691 2.97923 3.76595 3.85375 3.91925 3.99896 4.09548 4.21256 4.28949 4.38337 4.38912 4.44418 4.46101 4.48558 4.63537 4.72898 4.74436 4.78637 4.83860 4.85226 4.93861 5.14284 5.16611 5.21645 5.29045 5.32784 5.65339 5.71598 5.84022 6.12040 6.62793 6.67664 6.91909 7.79080 8.67199 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.027306 B = 0.003089 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.156036 B = 9061.752182 C = 9448.799999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.332 6.332 3 C 0.080 3.920 4 C -0.164 4.164 5 C -0.109 4.109 6 C -0.077 4.077 7 C -0.048 4.048 8 C -0.060 4.060 9 H 0.102 0.898 10 C -0.135 4.135 11 C 0.399 3.601 12 O -0.582 6.582 13 O -0.242 6.242 14 C -0.423 4.423 15 H 0.081 0.919 16 C -0.004 4.004 17 N -0.902 5.902 18 Si 1.015 2.985 19 H -0.262 1.262 20 H -0.260 1.260 21 H -0.262 1.262 22 C -0.171 4.171 23 C 0.081 3.919 24 O -0.328 6.328 25 C 0.018 3.982 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.115 0.885 29 H 0.163 0.837 30 H 0.146 0.854 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.049 0.951 34 H 0.095 0.905 35 H 0.060 0.940 36 H 0.278 0.722 37 H 0.141 0.859 38 H 0.120 0.880 39 H 0.061 0.939 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.992 -16.305 8.292 20.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.246 6.246 3 C 0.034 3.966 4 C -0.182 4.182 5 C -0.127 4.127 6 C -0.078 4.078 7 C -0.086 4.086 8 C -0.079 4.079 9 H 0.120 0.880 10 C -0.192 4.192 11 C 0.247 3.753 12 O -0.481 6.481 13 O -0.150 6.150 14 C -0.499 4.499 15 H 0.098 0.902 16 C -0.204 4.204 17 N -0.540 5.540 18 Si 0.834 3.166 19 H -0.187 1.187 20 H -0.184 1.184 21 H -0.186 1.186 22 C -0.190 4.190 23 C 0.036 3.964 24 O -0.242 6.242 25 C -0.076 4.076 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.134 0.866 29 H 0.181 0.819 30 H 0.164 0.836 31 H 0.098 0.902 32 H 0.088 0.912 33 H 0.068 0.932 34 H 0.114 0.886 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.159 0.841 38 H 0.138 0.862 39 H 0.080 0.920 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.866 -16.532 8.309 20.968 hybrid contribution 0.736 1.041 -0.055 1.276 sum -9.130 -15.491 8.255 19.785 Atomic orbital electron populations 1.23352 0.76549 1.05457 1.02354 1.86128 1.23255 1.26056 1.89204 1.18498 0.89238 0.85986 1.02833 1.21307 1.01173 0.90416 1.05334 1.21039 0.93348 0.98185 1.00130 1.19459 0.94059 0.93339 1.00913 1.20253 1.01144 0.93583 0.93584 1.20831 0.97098 0.90744 0.99219 0.88007 1.21761 0.93995 1.03326 1.00080 1.24460 0.80528 0.88235 0.82068 1.90506 1.56277 1.66967 1.34301 1.83906 1.61871 1.36380 1.32846 1.21379 1.33987 0.99411 0.95091 0.90174 1.26511 0.97840 1.02870 0.93163 1.70069 1.44679 1.40958 0.98269 0.84719 0.78042 0.75214 0.78612 1.18663 1.18385 1.18600 1.21085 1.00946 0.90467 1.06482 1.18441 0.88924 0.86172 1.02878 1.86109 1.20293 1.28582 1.89255 1.23307 0.77106 1.05268 1.01930 0.91483 0.91625 0.86629 0.81933 0.83612 0.90179 0.91232 0.93153 0.88647 0.92114 0.91229 0.84146 0.86177 0.92015 0.92362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 113.37 1.11 1.33 16 2 O -0.33 -7.73 10.28 -79.70 -0.82 -8.55 16 3 C 0.08 1.96 6.70 22.57 0.15 2.11 16 4 C -0.16 -3.29 9.04 22.35 0.20 -3.09 16 5 C -0.11 -2.39 7.95 22.28 0.18 -2.21 16 6 C -0.08 -2.00 4.71 -19.86 -0.09 -2.10 16 7 C -0.05 -1.49 4.18 29.85 0.12 -1.36 16 8 C -0.06 -2.18 2.82 -11.54 -0.03 -2.21 16 9 H 0.10 3.55 8.14 -2.39 -0.02 3.53 16 10 C -0.13 -4.30 8.69 71.98 0.63 -3.67 16 11 C 0.40 20.12 7.20 71.24 0.51 20.64 16 12 O -0.58 -31.88 15.16 20.78 0.31 -31.57 16 13 O -0.24 -14.36 9.65 14.89 0.14 -14.22 16 14 C -0.42 -25.92 9.65 67.94 0.66 -25.26 16 15 H 0.08 4.97 6.86 -2.91 -0.02 4.95 16 16 C 0.00 -0.21 5.49 84.88 0.47 0.26 16 17 N -0.90 -53.67 13.67 21.63 0.30 -53.38 16 18 Si 1.02 43.69 29.55 68.60 2.03 45.72 16 19 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 20 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 21 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 22 C -0.17 -4.40 8.69 22.35 0.19 -4.21 16 23 C 0.08 2.16 6.70 22.57 0.15 2.31 16 24 O -0.33 -8.54 10.28 -79.59 -0.82 -9.36 16 25 C 0.02 0.33 9.81 113.37 1.11 1.44 16 26 H 0.07 0.67 7.65 -2.39 -0.02 0.66 16 27 H 0.07 0.69 7.67 -2.39 -0.02 0.68 16 28 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.16 2.19 6.30 -2.91 -0.02 2.17 16 30 H 0.15 2.67 8.03 -2.91 -0.02 2.65 16 31 H 0.08 2.45 8.08 -2.39 -0.02 2.44 16 32 H 0.07 2.27 7.90 -2.38 -0.02 2.25 16 33 H 0.05 1.83 8.11 -2.39 -0.02 1.81 16 34 H 0.09 2.42 6.27 -2.39 -0.01 2.40 16 35 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.28 15.03 8.31 -92.71 -0.77 14.26 16 37 H 0.14 3.32 6.30 -2.91 -0.02 3.30 16 38 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.06 1.02 7.66 -2.39 -0.02 1.00 16 40 H 0.06 1.03 7.66 -2.38 -0.02 1.01 16 Total: -1.00 -77.27 340.73 7.55 -69.72 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: 1.05 Total: 17.64 kcal Atomic # 6 Polarization: -21.37 SS G_CDS: 5.36 Total: -16.01 kcal Atomic # 7 Polarization: -53.67 SS G_CDS: 0.30 Total: -53.38 kcal Atomic # 8 Polarization: -62.52 SS G_CDS: -1.18 Total: -63.70 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -77.27 7.55 -69.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781313175.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.886 kcal (2) G-P(sol) polarization free energy of solvation -77.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds