Wall clock time and date at job start Tue Mar 31 2020 07:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42908 * 114.00108 * 2 1 4 4 C 1.52995 * 109.46818 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.46739 * 184.99581 * 4 3 2 6 6 C 1.53004 * 109.47376 * 304.99204 * 4 3 2 7 7 O 1.45193 * 109.47708 * 64.99935 * 4 3 2 8 8 C 1.34230 * 117.00621 * 149.99910 * 7 4 3 9 9 O 1.20825 * 119.99618 * 359.97438 * 8 7 4 10 10 C 1.50697 * 120.00146 * 180.02562 * 8 7 4 11 11 C 1.50699 * 109.46970 * 179.97438 * 10 8 7 12 12 C 1.38328 * 119.96224 * 270.02075 * 11 10 8 13 13 C 1.38279 * 120.13490 * 179.97438 * 12 11 10 14 14 C 1.38120 * 120.07187 * 359.77180 * 13 12 11 15 15 C 1.38861 * 119.92847 * 0.50048 * 14 13 12 16 16 O 1.35751 * 120.06597 * 179.74703 * 15 14 13 17 17 C 1.34829 * 117.00376 * 354.17384 * 16 15 14 18 18 H 1.07998 * 119.99999 * 5.03596 * 17 16 15 19 19 C 1.38657 * 120.00083 * 185.03464 * 17 16 15 20 20 N 1.31555 * 119.99797 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 119.99748 * 0.02562 * 19 17 16 22 22 H 1.48496 * 109.47410 * 90.00109 * 21 19 17 23 23 H 1.48504 * 109.46801 * 209.99865 * 21 19 17 24 24 H 1.48497 * 109.47495 * 329.99577 * 21 19 17 25 25 C 1.38073 * 119.96952 * 89.99515 * 11 10 8 26 26 H 1.09001 * 109.46879 * 60.00206 * 1 2 3 27 27 H 1.08991 * 109.47418 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46944 * 300.00077 * 1 2 3 29 29 H 1.08995 * 109.46757 * 59.99688 * 3 2 1 30 30 H 1.09002 * 109.46707 * 299.99975 * 3 2 1 31 31 H 1.09004 * 109.46879 * 60.00462 * 6 4 3 32 32 H 1.08996 * 109.47346 * 179.97438 * 6 4 3 33 33 H 1.08994 * 109.47337 * 300.00907 * 6 4 3 34 34 H 1.08996 * 109.47386 * 59.99563 * 10 8 7 35 35 H 1.08997 * 109.47038 * 299.99398 * 10 8 7 36 36 H 1.08001 * 119.93314 * 359.97438 * 12 11 10 37 37 H 1.07999 * 119.96467 * 180.02562 * 13 12 11 38 38 H 1.08001 * 120.03711 * 180.27572 * 14 13 12 39 39 H 0.96998 * 119.99749 * 179.97438 * 20 19 17 40 40 H 1.08001 * 120.03594 * 0.04940 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 1 3.9785 2.1765 0.0889 6 6 3.9790 0.3194 1.1808 7 8 3.9718 0.5699 -1.2415 8 6 5.1828 0.9204 -1.7025 9 8 5.8557 1.7150 -1.0896 10 6 5.7025 0.3237 -2.9850 11 6 7.0726 0.8785 -3.2781 12 6 7.2046 2.0314 -4.0311 13 6 8.4601 2.5439 -4.3017 14 6 9.5864 1.9083 -3.8166 15 6 9.4575 0.7477 -3.0653 16 8 10.5628 0.1179 -2.5915 17 6 11.7585 0.6005 -2.9856 18 1 11.8080 1.4993 -3.5824 19 6 12.9246 -0.0571 -2.6247 20 7 14.0912 0.4135 -3.0097 21 14 12.8389 -1.6120 -1.5931 22 1 12.7431 -2.7943 -2.4865 23 1 14.0625 -1.7203 -0.7584 24 1 11.6434 -1.5577 -0.7140 25 6 8.1949 0.2359 -2.7944 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.6886 1.8464 0.8899 30 1 1.6886 1.8464 -0.8900 31 1 3.5359 -0.6725 1.0913 32 1 5.0655 0.2329 1.1800 33 1 3.6515 0.7809 2.1123 34 1 5.0268 0.5747 -3.8026 35 1 5.7631 -0.7598 -2.8833 36 1 6.3253 2.5322 -4.4083 37 1 8.5599 3.4444 -4.8895 38 1 10.5664 2.3116 -4.0246 39 1 14.9070 -0.0463 -2.7569 40 1 8.0913 -0.6644 -2.2069 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000784421939.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:37:15 Heat of formation + Delta-G solvation = -135.341219 kcal Electronic energy + Delta-G solvation = -22903.059511 eV Core-core repulsion = 19263.171479 eV Total energy + Delta-G solvation = -3639.888031 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.59476 -39.16860 -38.31043 -36.96326 -36.16289 -32.85544 -32.38716 -31.98511 -29.47633 -27.70727 -27.45511 -26.04535 -25.18197 -22.80898 -21.72823 -20.92616 -20.17246 -17.86173 -17.72013 -17.19355 -16.68354 -16.56665 -16.17413 -15.77997 -15.19985 -15.01752 -14.77408 -14.09411 -13.79772 -13.67897 -13.57893 -13.36038 -13.00445 -12.64602 -12.54518 -12.37692 -12.17417 -12.14992 -11.81202 -11.62168 -11.32369 -11.20101 -10.87139 -10.81503 -10.72241 -10.62846 -10.29332 -10.14657 -10.04502 -9.38540 -8.85738 -8.18982 -7.36887 -6.39464 -4.06262 1.90065 2.26539 2.34770 2.78821 3.24080 3.27329 3.39274 3.42929 4.25984 4.43046 4.46103 4.64682 4.69779 4.79947 4.88456 4.98649 5.02889 5.03679 5.08035 5.12870 5.28634 5.31792 5.32431 5.55172 5.63090 5.66308 5.69275 5.82707 6.04585 6.10809 6.24066 6.44622 6.53615 6.76269 6.77793 7.07542 7.18908 7.30699 7.59440 7.81616 7.89149 8.05526 8.95919 9.58369 10.68254 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.023503 B = 0.003083 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.061006 B = 9078.971411 C = 9863.699518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.379 6.379 3 C 0.066 3.934 4 C 0.087 3.913 5 H 0.098 0.902 6 C -0.166 4.166 7 O -0.349 6.349 8 C 0.458 3.542 9 O -0.491 6.491 10 C -0.065 4.065 11 C -0.045 4.045 12 C -0.186 4.186 13 C -0.076 4.076 14 C -0.215 4.215 15 C 0.160 3.840 16 O -0.218 6.218 17 C -0.389 4.389 18 H 0.106 0.894 19 C 0.063 3.937 20 N -0.880 5.880 21 Si 0.905 3.095 22 H -0.273 1.273 23 H -0.282 1.282 24 H -0.260 1.260 25 C -0.172 4.172 26 H 0.041 0.959 27 H 0.087 0.913 28 H 0.040 0.960 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.110 0.890 35 H 0.112 0.888 36 H 0.106 0.894 37 H 0.112 0.888 38 H 0.134 0.866 39 H 0.279 0.721 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.078 0.529 3.799 25.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.298 6.298 3 C -0.011 4.011 4 C 0.033 3.967 5 H 0.116 0.884 6 C -0.223 4.223 7 O -0.267 6.267 8 C 0.300 3.700 9 O -0.377 6.377 10 C -0.102 4.102 11 C -0.046 4.046 12 C -0.205 4.205 13 C -0.094 4.094 14 C -0.234 4.234 15 C 0.108 3.892 16 O -0.123 6.123 17 C -0.465 4.465 18 H 0.124 0.876 19 C -0.140 4.140 20 N -0.518 5.518 21 Si 0.731 3.269 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.184 1.184 25 C -0.191 4.191 26 H 0.060 0.940 27 H 0.105 0.895 28 H 0.058 0.942 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.129 0.871 35 H 0.130 0.870 36 H 0.124 0.876 37 H 0.130 0.870 38 H 0.151 0.849 39 H 0.089 0.911 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -24.492 0.391 4.182 24.850 hybrid contribution 0.033 -0.121 0.471 0.487 sum -24.459 0.269 4.653 24.899 Atomic orbital electron populations 1.22756 0.81070 1.02927 0.99880 1.87972 1.19506 1.26957 1.95361 1.22653 0.91593 0.85681 1.01192 1.22751 0.92627 0.98475 0.82884 0.88436 1.22093 1.02363 1.01411 0.96480 1.86641 1.34943 1.65403 1.39681 1.23870 0.79233 0.79752 0.87115 1.90706 1.56826 1.32117 1.58039 1.20254 0.95183 1.02134 0.92623 1.18675 0.91541 0.95834 0.98526 1.20441 0.96881 0.97975 1.05229 1.20743 0.92138 0.98406 0.98122 1.21325 0.99703 0.98048 1.04291 1.18996 0.87169 0.91167 0.91868 1.83570 1.12858 1.53030 1.62853 1.20765 0.79627 1.11635 1.34429 0.87629 1.24459 0.93558 0.98862 0.97119 1.69646 0.97373 1.40315 1.44505 0.86186 0.78185 0.82074 0.80500 1.19866 1.20799 1.18358 1.19965 0.89756 1.02711 1.06696 0.94006 0.89492 0.94176 0.91257 0.92299 0.90623 0.91728 0.91064 0.87142 0.87033 0.87554 0.87036 0.84885 0.91080 0.86629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.38 -3.70 9.79 -38.80 -0.38 -4.08 16 3 C 0.07 0.56 5.82 37.15 0.22 0.77 16 4 C 0.09 0.96 2.97 -26.73 -0.08 0.88 16 5 H 0.10 1.10 7.16 -51.93 -0.37 0.73 16 6 C -0.17 -1.76 9.35 37.16 0.35 -1.41 16 7 O -0.35 -4.54 9.85 -42.02 -0.41 -4.95 16 8 C 0.46 6.73 7.92 36.00 0.29 7.01 16 9 O -0.49 -8.89 15.25 -18.75 -0.29 -9.18 16 10 C -0.06 -0.85 5.94 -29.04 -0.17 -1.02 16 11 C -0.05 -0.79 4.37 -104.65 -0.46 -1.25 16 12 C -0.19 -3.20 9.70 -39.53 -0.38 -3.58 16 13 C -0.08 -1.41 10.04 -39.61 -0.40 -1.81 16 14 C -0.21 -4.75 9.17 -39.39 -0.36 -5.11 16 15 C 0.16 3.80 6.65 -39.11 -0.26 3.54 16 16 O -0.22 -5.88 8.59 0.05 0.00 -5.88 16 17 C -0.39 -11.13 9.95 30.89 0.31 -10.82 16 18 H 0.11 3.08 5.44 -52.49 -0.29 2.79 16 19 C 0.06 1.79 5.49 -17.52 -0.10 1.70 16 20 N -0.88 -25.69 13.96 55.48 0.77 -24.92 16 21 Si 0.91 22.00 28.62 -169.99 -4.86 17.13 16 22 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.26 -6.37 7.11 56.52 0.40 -5.97 16 25 C -0.17 -3.52 9.65 -39.40 -0.38 -3.90 16 26 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 27 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.04 0.20 8.14 -51.93 -0.42 -0.23 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.82 7.56 -51.93 -0.39 0.43 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.11 1.13 8.08 -51.93 -0.42 0.71 16 35 H 0.11 1.26 8.08 -51.93 -0.42 0.84 16 36 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 37 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 38 H 0.13 3.07 5.64 -52.49 -0.30 2.77 16 39 H 0.28 7.52 8.31 -40.82 -0.34 7.18 16 40 H 0.12 2.22 8.06 -52.49 -0.42 1.80 16 LS Contribution 346.85 15.07 5.23 5.23 Total: -1.00 -32.92 346.85 -5.81 -38.73 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -5.55 Total: 1.62 kcal Atomic # 6 Polarization: -13.38 SS G_CDS: -0.32 Total: -13.69 kcal Atomic # 7 Polarization: -25.69 SS G_CDS: 0.77 Total: -24.92 kcal Atomic # 8 Polarization: -23.01 SS G_CDS: -1.08 Total: -24.09 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.86 Total: 17.13 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.92 -5.81 -38.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784421939.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.615 kcal (2) G-P(sol) polarization free energy of solvation -32.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds