Wall clock time and date at job start Tue Mar 31 2020 07:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42908 * 114.00108 * 2 1 4 4 C 1.52995 * 109.46818 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.46739 * 184.99581 * 4 3 2 6 6 C 1.53004 * 109.47376 * 304.99204 * 4 3 2 7 7 O 1.45193 * 109.47708 * 64.99935 * 4 3 2 8 8 C 1.34230 * 117.00621 * 149.99910 * 7 4 3 9 9 O 1.20825 * 119.99618 * 359.97438 * 8 7 4 10 10 C 1.50697 * 120.00146 * 180.02562 * 8 7 4 11 11 C 1.50699 * 109.46970 * 179.97438 * 10 8 7 12 12 C 1.38328 * 119.96224 * 270.02075 * 11 10 8 13 13 C 1.38279 * 120.13490 * 179.97438 * 12 11 10 14 14 C 1.38120 * 120.07187 * 359.77180 * 13 12 11 15 15 C 1.38861 * 119.92847 * 0.50048 * 14 13 12 16 16 O 1.35751 * 120.06597 * 179.74703 * 15 14 13 17 17 C 1.34829 * 117.00376 * 354.17384 * 16 15 14 18 18 H 1.07998 * 119.99999 * 5.03596 * 17 16 15 19 19 C 1.38657 * 120.00083 * 185.03464 * 17 16 15 20 20 N 1.31555 * 119.99797 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 119.99748 * 0.02562 * 19 17 16 22 22 H 1.48496 * 109.47410 * 90.00109 * 21 19 17 23 23 H 1.48504 * 109.46801 * 209.99865 * 21 19 17 24 24 H 1.48497 * 109.47495 * 329.99577 * 21 19 17 25 25 C 1.38073 * 119.96952 * 89.99515 * 11 10 8 26 26 H 1.09001 * 109.46879 * 60.00206 * 1 2 3 27 27 H 1.08991 * 109.47418 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46944 * 300.00077 * 1 2 3 29 29 H 1.08995 * 109.46757 * 59.99688 * 3 2 1 30 30 H 1.09002 * 109.46707 * 299.99975 * 3 2 1 31 31 H 1.09004 * 109.46879 * 60.00462 * 6 4 3 32 32 H 1.08996 * 109.47346 * 179.97438 * 6 4 3 33 33 H 1.08994 * 109.47337 * 300.00907 * 6 4 3 34 34 H 1.08996 * 109.47386 * 59.99563 * 10 8 7 35 35 H 1.08997 * 109.47038 * 299.99398 * 10 8 7 36 36 H 1.08001 * 119.93314 * 359.97438 * 12 11 10 37 37 H 1.07999 * 119.96467 * 180.02562 * 13 12 11 38 38 H 1.08001 * 120.03711 * 180.27572 * 14 13 12 39 39 H 0.96998 * 119.99749 * 179.97438 * 20 19 17 40 40 H 1.08001 * 120.03594 * 0.04940 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 1 3.9785 2.1765 0.0889 6 6 3.9790 0.3194 1.1808 7 8 3.9718 0.5699 -1.2415 8 6 5.1828 0.9204 -1.7025 9 8 5.8557 1.7150 -1.0896 10 6 5.7025 0.3237 -2.9850 11 6 7.0726 0.8785 -3.2781 12 6 7.2046 2.0314 -4.0311 13 6 8.4601 2.5439 -4.3017 14 6 9.5864 1.9083 -3.8166 15 6 9.4575 0.7477 -3.0653 16 8 10.5628 0.1179 -2.5915 17 6 11.7585 0.6005 -2.9856 18 1 11.8080 1.4993 -3.5824 19 6 12.9246 -0.0571 -2.6247 20 7 14.0912 0.4135 -3.0097 21 14 12.8389 -1.6120 -1.5931 22 1 12.7431 -2.7943 -2.4865 23 1 14.0625 -1.7203 -0.7584 24 1 11.6434 -1.5577 -0.7140 25 6 8.1949 0.2359 -2.7944 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.6886 1.8464 0.8899 30 1 1.6886 1.8464 -0.8900 31 1 3.5359 -0.6725 1.0913 32 1 5.0655 0.2329 1.1800 33 1 3.6515 0.7809 2.1123 34 1 5.0268 0.5747 -3.8026 35 1 5.7631 -0.7598 -2.8833 36 1 6.3253 2.5322 -4.4083 37 1 8.5599 3.4444 -4.8895 38 1 10.5664 2.3116 -4.0246 39 1 14.9070 -0.0463 -2.7569 40 1 8.0913 -0.6644 -2.2069 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000784421939.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:37:15 Heat of formation + Delta-G solvation = -155.642120 kcal Electronic energy + Delta-G solvation = -22903.939824 eV Core-core repulsion = 19263.171479 eV Total energy + Delta-G solvation = -3640.768345 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.72047 -40.82295 -39.12885 -38.44102 -37.34090 -34.49769 -33.90869 -33.14651 -31.12558 -28.83069 -28.32456 -27.21405 -26.64108 -24.00175 -23.24537 -22.20925 -21.40865 -19.67544 -18.92513 -18.88245 -17.61027 -17.40678 -17.10515 -16.87194 -16.53629 -16.44312 -15.84004 -15.78679 -15.58309 -15.13635 -14.60469 -14.48278 -14.28133 -14.18475 -13.95323 -13.72388 -13.23234 -13.04874 -12.96126 -12.85227 -12.56075 -12.47976 -12.39340 -12.33123 -12.00995 -11.94783 -11.64071 -11.40537 -11.32566 -10.91872 -10.61894 -9.74070 -9.10034 -8.51005 -6.23777 0.38880 0.66845 1.23133 1.29694 1.33813 1.50680 1.73573 2.27201 2.76403 2.80912 3.01281 3.12223 3.65508 3.70481 3.89997 3.92356 4.04871 4.18258 4.25650 4.37521 4.39161 4.49615 4.52418 4.58605 4.61095 4.64802 4.68219 4.76977 4.80308 4.92010 4.93690 5.17545 5.21366 5.36994 5.47549 5.60712 5.68607 5.74678 5.89700 6.21251 6.21825 6.79663 6.83292 7.57686 8.60692 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.023503 B = 0.003083 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.061006 B = 9078.971411 C = 9863.699518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.406 6.406 3 C 0.069 3.931 4 C 0.078 3.922 5 H 0.093 0.907 6 C -0.162 4.162 7 O -0.346 6.346 8 C 0.464 3.536 9 O -0.534 6.534 10 C -0.062 4.062 11 C -0.038 4.038 12 C -0.166 4.166 13 C -0.076 4.076 14 C -0.236 4.236 15 C 0.119 3.881 16 O -0.246 6.246 17 C -0.400 4.400 18 H 0.081 0.919 19 C 0.010 3.990 20 N -0.923 5.923 21 Si 0.970 3.030 22 H -0.262 1.262 23 H -0.266 1.266 24 H -0.267 1.267 25 C -0.179 4.179 26 H 0.049 0.951 27 H 0.093 0.907 28 H 0.054 0.946 29 H 0.094 0.906 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.040 0.960 33 H 0.092 0.908 34 H 0.153 0.847 35 H 0.134 0.866 36 H 0.152 0.848 37 H 0.144 0.856 38 H 0.109 0.891 39 H 0.285 0.715 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.068 0.201 3.790 29.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.326 6.326 3 C -0.007 4.007 4 C 0.024 3.976 5 H 0.111 0.889 6 C -0.219 4.219 7 O -0.264 6.264 8 C 0.308 3.692 9 O -0.423 6.423 10 C -0.099 4.099 11 C -0.039 4.039 12 C -0.185 4.185 13 C -0.094 4.094 14 C -0.255 4.255 15 C 0.070 3.930 16 O -0.154 6.154 17 C -0.476 4.476 18 H 0.099 0.901 19 C -0.188 4.188 20 N -0.564 5.564 21 Si 0.793 3.207 22 H -0.187 1.187 23 H -0.191 1.191 24 H -0.192 1.192 25 C -0.198 4.198 26 H 0.068 0.932 27 H 0.111 0.889 28 H 0.072 0.928 29 H 0.112 0.888 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.060 0.940 33 H 0.111 0.889 34 H 0.171 0.829 35 H 0.152 0.848 36 H 0.170 0.830 37 H 0.161 0.839 38 H 0.127 0.873 39 H 0.095 0.905 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -28.544 0.067 4.155 28.845 hybrid contribution 0.908 0.124 0.406 1.002 sum -27.636 0.191 4.561 28.010 Atomic orbital electron populations 1.22924 0.79388 1.03790 1.00975 1.87924 1.21390 1.27618 1.95618 1.22686 0.89520 0.85688 1.02853 1.23029 0.94547 0.98029 0.82017 0.88877 1.22066 1.00731 1.01531 0.97617 1.86633 1.33922 1.65278 1.40525 1.24062 0.79238 0.78818 0.87078 1.90708 1.57964 1.34222 1.59388 1.20378 0.93060 1.03147 0.93317 1.19148 0.92783 0.95262 0.96679 1.21044 0.97653 0.96992 1.02767 1.21130 0.91582 0.99106 0.97609 1.21368 1.00197 0.98473 1.05472 1.19567 0.87496 0.92319 0.93617 1.83510 1.12841 1.54214 1.64861 1.20718 0.81075 1.11271 1.34550 0.90116 1.25272 0.93076 1.02047 0.98442 1.69726 0.98052 1.42101 1.46476 0.85225 0.78202 0.78374 0.78949 1.18711 1.19096 1.19156 1.20281 0.89419 1.03327 1.06748 0.93198 0.88868 0.92759 0.88770 0.91415 0.90962 0.94046 0.88913 0.82904 0.84825 0.83026 0.83868 0.87309 0.90549 0.85935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 113.37 1.25 1.49 16 2 O -0.41 -6.83 9.79 -145.57 -1.43 -8.26 16 3 C 0.07 0.97 5.82 71.98 0.42 1.39 16 4 C 0.08 1.55 2.97 30.59 0.09 1.65 16 5 H 0.09 1.94 7.16 -2.38 -0.02 1.93 16 6 C -0.16 -3.21 9.35 71.98 0.67 -2.54 16 7 O -0.35 -8.07 9.85 -48.77 -0.48 -8.55 16 8 C 0.46 12.33 7.92 71.24 0.56 12.89 16 9 O -0.53 -18.49 15.25 21.97 0.34 -18.16 16 10 C -0.06 -1.37 5.94 29.10 0.17 -1.20 16 11 C -0.04 -1.22 4.37 -19.88 -0.09 -1.31 16 12 C -0.17 -5.07 9.70 22.30 0.22 -4.85 16 13 C -0.08 -2.71 10.04 22.25 0.22 -2.48 16 14 C -0.24 -10.79 9.17 22.39 0.21 -10.59 16 15 C 0.12 5.83 6.65 22.58 0.15 5.98 16 16 O -0.25 -13.95 8.59 -22.74 -0.20 -14.14 16 17 C -0.40 -24.29 9.95 67.92 0.68 -23.61 16 18 H 0.08 5.12 5.44 -2.91 -0.02 5.10 16 19 C 0.01 0.59 5.49 84.83 0.47 1.06 16 20 N -0.92 -56.17 13.96 21.61 0.30 -55.87 16 21 Si 0.97 46.69 28.62 68.60 1.96 48.66 16 22 H -0.26 -12.01 7.11 99.48 0.71 -11.30 16 23 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 24 H -0.27 -13.01 7.11 99.48 0.71 -12.30 16 25 C -0.18 -7.22 9.65 22.39 0.22 -7.00 16 26 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 27 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 29 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.07 1.47 7.56 -2.38 -0.02 1.45 16 32 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.15 2.16 8.08 -2.39 -0.02 2.14 16 35 H 0.13 2.45 8.08 -2.39 -0.02 2.43 16 36 H 0.15 3.35 8.06 -2.91 -0.02 3.32 16 37 H 0.14 4.10 8.06 -2.91 -0.02 4.08 16 38 H 0.11 5.43 5.64 -2.91 -0.02 5.41 16 39 H 0.28 15.87 8.31 -92.71 -0.77 15.10 16 40 H 0.12 4.66 8.06 -2.91 -0.02 4.64 16 Total: -1.00 -76.00 346.85 6.77 -69.23 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: 1.04 Total: 16.23 kcal Atomic # 6 Polarization: -34.37 SS G_CDS: 5.23 Total: -29.13 kcal Atomic # 7 Polarization: -56.17 SS G_CDS: 0.30 Total: -55.87 kcal Atomic # 8 Polarization: -47.34 SS G_CDS: -1.77 Total: -49.11 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 1.96 Total: 48.66 kcal Total: -76.00 6.77 -69.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784421939.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.415 kcal (2) G-P(sol) polarization free energy of solvation -75.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds