Wall clock time and date at job start Tue Mar 31 2020 07:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42889 * 114.00153 * 2 1 4 4 C 1.53008 * 109.47107 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.46583 * 304.99942 * 4 3 2 6 6 O 1.42897 * 109.47292 * 65.00195 * 4 3 2 7 7 C 1.50698 * 109.47254 * 185.00317 * 4 3 2 8 8 O 1.20831 * 120.00081 * 24.99547 * 7 4 3 9 9 O 1.34227 * 120.00045 * 204.99876 * 7 4 3 10 10 C 1.45208 * 117.00092 * 179.97438 * 9 7 4 11 11 C 1.50701 * 109.47113 * 179.97438 * 10 9 7 12 12 C 1.38635 * 119.74938 * 270.25624 * 11 10 9 13 13 C 1.37619 * 120.24352 * 180.25874 * 12 11 10 14 14 C 1.40711 * 119.74798 * 359.46791 * 13 12 11 15 15 C 1.41396 * 120.24787 * 180.29782 * 14 13 12 16 16 H 1.08005 * 119.99505 * 335.28837 * 15 14 13 17 17 C 1.39942 * 120.00083 * 155.28075 * 15 14 13 18 18 N 1.30817 * 120.00502 * 342.23482 * 17 15 14 19 19 Si 1.86807 * 119.99811 * 162.22853 * 17 15 14 20 20 H 1.48505 * 109.46906 * 94.66663 * 19 17 15 21 21 H 1.48499 * 109.47220 * 214.66572 * 19 17 15 22 22 H 1.48500 * 109.47278 * 334.66810 * 19 17 15 23 23 C 1.40719 * 119.50966 * 0.27391 * 14 13 12 24 24 C 1.37612 * 119.74521 * 0.02562 * 23 14 13 25 25 H 1.08999 * 109.47087 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46694 * 299.99768 * 1 2 3 27 27 H 1.09003 * 109.47088 * 59.99645 * 1 2 3 28 28 H 1.09001 * 109.47364 * 60.00249 * 3 2 1 29 29 H 1.09004 * 109.47915 * 299.99707 * 3 2 1 30 30 H 1.08999 * 109.47302 * 299.99676 * 5 4 3 31 31 H 1.08998 * 109.46996 * 60.00576 * 5 4 3 32 32 H 1.09000 * 109.46640 * 180.02562 * 5 4 3 33 33 H 0.96691 * 113.99814 * 60.00090 * 6 4 3 34 34 H 1.09003 * 109.46654 * 60.00015 * 10 9 7 35 35 H 1.08997 * 109.47205 * 300.00321 * 10 9 7 36 36 H 1.07995 * 119.87697 * 0.02562 * 12 11 10 37 37 H 1.07999 * 120.12174 * 179.73950 * 13 12 11 38 38 H 0.97001 * 120.00527 * 179.97438 * 18 17 15 39 39 H 1.08003 * 120.12678 * 180.02562 * 23 14 13 40 40 H 1.08006 * 119.87565 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.5356 1.1845 -0.0006 5 6 3.9790 0.3192 1.1807 6 8 3.9650 0.5795 -1.2220 7 6 4.1482 2.5557 0.1233 8 8 3.5245 3.4515 0.6414 9 8 5.3867 2.7820 -0.3420 10 6 5.9129 4.1267 -0.1893 11 6 7.3043 4.1901 -0.7648 12 6 8.3962 3.9132 0.0432 13 6 9.6715 3.9733 -0.4704 14 6 9.8642 4.3063 -1.8239 15 6 11.1695 4.3650 -2.3642 16 1 12.0137 4.5534 -1.7173 17 6 11.3676 4.1787 -3.7369 18 7 10.4349 3.6172 -4.4622 19 14 12.9641 4.7320 -4.5337 20 1 13.9092 3.5882 -4.5950 21 1 12.6879 5.2201 -5.9087 22 1 13.5643 5.8276 -3.7308 23 6 8.7480 4.5802 -2.6359 24 6 7.4822 4.5202 -2.0995 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.6887 1.8463 0.8900 29 1 1.6888 1.8464 -0.8900 30 1 3.6515 0.7807 2.1123 31 1 3.5359 -0.6727 1.0911 32 1 5.0656 0.2334 1.1805 33 1 3.7177 1.0752 -2.0145 34 1 5.9456 4.3860 0.8690 35 1 5.2689 4.8309 -0.7161 36 1 8.2457 3.6531 1.0805 37 1 10.5210 3.7613 0.1619 38 1 10.5721 3.4885 -5.4138 39 1 8.8844 4.8364 -3.6762 40 1 6.6241 4.7303 -2.7207 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000785343463.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:34 Heat of formation + Delta-G solvation = -166.616482 kcal Electronic energy + Delta-G solvation = -23094.810361 eV Core-core repulsion = 19453.566132 eV Total energy + Delta-G solvation = -3641.244229 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.65302 -38.56649 -37.67011 -36.63607 -36.17556 -33.87577 -31.89144 -30.79559 -29.38528 -27.79213 -27.30975 -26.11152 -24.39322 -23.02438 -21.10416 -20.31763 -20.07620 -18.53083 -17.40394 -16.89533 -16.56570 -16.43439 -15.98673 -15.84672 -15.34636 -14.62229 -14.31106 -14.05792 -13.84008 -13.61616 -13.16801 -12.66912 -12.54295 -12.52853 -12.31500 -12.09936 -12.03858 -11.90372 -11.74252 -11.59320 -11.17859 -11.00430 -10.87102 -10.74025 -10.47068 -10.22815 -10.09810 -9.89640 -9.67715 -9.48598 -9.22651 -7.57443 -7.46209 -6.87440 -4.47226 2.16761 2.29176 2.80880 2.99824 3.02269 3.06086 3.15324 3.75879 3.85316 4.00663 4.38825 4.50496 4.58111 4.93290 5.03962 5.05101 5.19479 5.29616 5.37384 5.57455 5.60320 5.62060 5.65682 5.69729 6.00971 6.06939 6.23056 6.29130 6.70222 6.77041 6.85988 6.96629 7.16754 7.25158 7.35782 7.50492 7.72082 7.91766 7.94663 7.99210 8.18181 8.52752 8.77574 8.85644 10.06365 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.030787 B = 0.002880 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.256488 B = 9719.041311 C =10082.652699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.376 6.376 3 C 0.047 3.953 4 C 0.150 3.850 5 C -0.136 4.136 6 O -0.526 6.526 7 C 0.434 3.566 8 O -0.516 6.516 9 O -0.332 6.332 10 C 0.132 3.868 11 C -0.237 4.237 12 C -0.062 4.062 13 C -0.230 4.230 14 C 0.119 3.881 15 C -0.455 4.455 16 H 0.080 0.920 17 C 0.075 3.925 18 N -0.784 5.784 19 Si 0.909 3.091 20 H -0.269 1.269 21 H -0.274 1.274 22 H -0.259 1.259 23 C -0.171 4.171 24 C -0.074 4.074 25 H 0.089 0.911 26 H 0.042 0.958 27 H 0.042 0.958 28 H 0.074 0.926 29 H 0.058 0.942 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.076 0.924 33 H 0.382 0.618 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.089 0.911 37 H 0.095 0.905 38 H 0.283 0.717 39 H 0.120 0.880 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.104 -4.096 4.934 15.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.295 6.295 3 C -0.030 4.030 4 C 0.107 3.893 5 C -0.193 4.193 6 O -0.331 6.331 7 C 0.276 3.724 8 O -0.406 6.406 9 O -0.247 6.247 10 C 0.061 3.939 11 C -0.238 4.238 12 C -0.081 4.081 13 C -0.249 4.249 14 C 0.116 3.884 15 C -0.484 4.484 16 H 0.099 0.901 17 C -0.144 4.144 18 N -0.408 5.408 19 Si 0.733 3.267 20 H -0.194 1.194 21 H -0.199 1.199 22 H -0.183 1.183 23 C -0.190 4.190 24 C -0.093 4.093 25 H 0.107 0.893 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.092 0.908 29 H 0.076 0.924 30 H 0.093 0.907 31 H 0.108 0.892 32 H 0.095 0.905 33 H 0.230 0.770 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.107 0.893 37 H 0.113 0.887 38 H 0.094 0.906 39 H 0.137 0.863 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -13.932 -4.494 5.238 15.548 hybrid contribution 0.163 1.004 -0.818 1.305 sum -13.769 -3.490 4.421 14.876 Atomic orbital electron populations 1.22786 0.80686 1.02950 1.00137 1.87897 1.19739 1.26404 1.95464 1.22954 0.92099 0.85548 1.02431 1.20968 0.91193 0.87623 0.89504 1.21695 1.03390 1.00528 0.93680 1.86678 1.80785 1.51338 1.14296 1.24382 0.81531 0.90905 0.75581 1.90638 1.62776 1.45934 1.41278 1.86822 1.28903 1.36812 1.72150 1.21827 0.93208 0.78907 0.99987 1.18650 0.90683 1.18942 0.95563 1.20386 0.92839 0.97832 0.97006 1.20962 0.95030 1.12024 0.96933 1.17688 0.93430 0.86382 0.90866 1.19679 0.93879 1.42242 0.92605 0.90147 1.25975 0.98571 0.92327 0.97551 1.69825 1.33959 1.28743 1.08284 0.86277 0.81520 0.80062 0.78798 1.19425 1.19917 1.18319 1.21280 0.91233 1.06006 1.00459 1.20515 0.96568 0.99075 0.93134 0.89289 0.93929 0.93977 0.90766 0.92406 0.90709 0.89239 0.90457 0.76983 0.92001 0.91991 0.89314 0.88676 0.90607 0.86260 0.89385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.35 16 2 O -0.38 -4.20 9.79 -40.08 -0.39 -4.59 16 3 C 0.05 0.53 4.70 37.16 0.17 0.71 16 4 C 0.15 2.00 1.15 -91.77 -0.11 1.90 16 5 C -0.14 -1.66 8.63 37.16 0.32 -1.34 16 6 O -0.53 -7.32 12.74 -55.81 -0.71 -8.03 16 7 C 0.43 6.96 6.80 36.00 0.24 7.21 16 8 O -0.52 -8.91 15.74 -18.75 -0.30 -9.21 16 9 O -0.33 -6.18 9.96 -44.42 -0.44 -6.62 16 10 C 0.13 2.51 5.58 36.01 0.20 2.71 16 11 C -0.24 -5.23 5.54 -104.33 -0.58 -5.81 16 12 C -0.06 -1.40 9.67 -39.66 -0.38 -1.78 16 13 C -0.23 -5.59 9.80 -38.87 -0.38 -5.97 16 14 C 0.12 3.12 5.57 -106.82 -0.60 2.53 16 15 C -0.46 -11.79 9.05 -37.74 -0.34 -12.13 16 16 H 0.08 1.99 7.91 -52.48 -0.41 1.57 16 17 C 0.07 1.83 5.14 -17.35 -0.09 1.74 16 18 N -0.78 -19.79 10.97 55.55 0.61 -19.18 16 19 Si 0.91 18.09 29.59 -169.99 -5.03 13.06 16 20 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 21 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 22 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 23 C -0.17 -4.36 8.70 -38.87 -0.34 -4.70 16 24 C -0.07 -1.72 9.67 -39.66 -0.38 -2.11 16 25 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.07 0.82 7.69 -51.93 -0.40 0.42 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.09 1.03 7.56 -51.93 -0.39 0.64 16 32 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.38 4.09 9.04 45.56 0.41 4.50 16 34 H 0.06 1.11 8.07 -51.93 -0.42 0.69 16 35 H 0.06 1.11 8.07 -51.93 -0.42 0.69 16 36 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 37 H 0.10 2.16 8.06 -52.49 -0.42 1.74 16 38 H 0.28 6.46 8.30 -40.82 -0.34 6.12 16 39 H 0.12 3.12 6.18 -52.48 -0.32 2.80 16 40 H 0.09 1.84 8.06 -52.48 -0.42 1.42 16 LS Contribution 346.93 15.07 5.23 5.23 Total: -1.00 -29.61 346.93 -7.07 -36.68 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -4.90 Total: 8.36 kcal Atomic # 6 Polarization: -14.55 SS G_CDS: -1.14 Total: -15.69 kcal Atomic # 7 Polarization: -19.79 SS G_CDS: 0.61 Total: -19.18 kcal Atomic # 8 Polarization: -26.61 SS G_CDS: -1.84 Total: -28.45 kcal Atomic # 14 Polarization: 18.09 SS G_CDS: -5.03 Total: 13.06 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.61 -7.07 -36.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785343463.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.938 kcal (2) G-P(sol) polarization free energy of solvation -29.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds