Wall clock time and date at job start Tue Mar 31 2020 07:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42889 * 114.00153 * 2 1 4 4 C 1.53008 * 109.47107 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.46583 * 304.99942 * 4 3 2 6 6 O 1.42897 * 109.47292 * 65.00195 * 4 3 2 7 7 C 1.50698 * 109.47254 * 185.00317 * 4 3 2 8 8 O 1.20831 * 120.00081 * 24.99547 * 7 4 3 9 9 O 1.34227 * 120.00045 * 204.99876 * 7 4 3 10 10 C 1.45208 * 117.00092 * 179.97438 * 9 7 4 11 11 C 1.50701 * 109.47113 * 179.97438 * 10 9 7 12 12 C 1.38635 * 119.74938 * 270.25624 * 11 10 9 13 13 C 1.37619 * 120.24352 * 180.25874 * 12 11 10 14 14 C 1.40711 * 119.74798 * 359.46791 * 13 12 11 15 15 C 1.41396 * 120.24787 * 180.29782 * 14 13 12 16 16 H 1.08005 * 119.99505 * 335.28837 * 15 14 13 17 17 C 1.39942 * 120.00083 * 155.28075 * 15 14 13 18 18 N 1.30817 * 120.00502 * 342.23482 * 17 15 14 19 19 Si 1.86807 * 119.99811 * 162.22853 * 17 15 14 20 20 H 1.48505 * 109.46906 * 94.66663 * 19 17 15 21 21 H 1.48499 * 109.47220 * 214.66572 * 19 17 15 22 22 H 1.48500 * 109.47278 * 334.66810 * 19 17 15 23 23 C 1.40719 * 119.50966 * 0.27391 * 14 13 12 24 24 C 1.37612 * 119.74521 * 0.02562 * 23 14 13 25 25 H 1.08999 * 109.47087 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46694 * 299.99768 * 1 2 3 27 27 H 1.09003 * 109.47088 * 59.99645 * 1 2 3 28 28 H 1.09001 * 109.47364 * 60.00249 * 3 2 1 29 29 H 1.09004 * 109.47915 * 299.99707 * 3 2 1 30 30 H 1.08999 * 109.47302 * 299.99676 * 5 4 3 31 31 H 1.08998 * 109.46996 * 60.00576 * 5 4 3 32 32 H 1.09000 * 109.46640 * 180.02562 * 5 4 3 33 33 H 0.96691 * 113.99814 * 60.00090 * 6 4 3 34 34 H 1.09003 * 109.46654 * 60.00015 * 10 9 7 35 35 H 1.08997 * 109.47205 * 300.00321 * 10 9 7 36 36 H 1.07995 * 119.87697 * 0.02562 * 12 11 10 37 37 H 1.07999 * 120.12174 * 179.73950 * 13 12 11 38 38 H 0.97001 * 120.00527 * 179.97438 * 18 17 15 39 39 H 1.08003 * 120.12678 * 180.02562 * 23 14 13 40 40 H 1.08006 * 119.87565 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.5356 1.1845 -0.0006 5 6 3.9790 0.3192 1.1807 6 8 3.9650 0.5795 -1.2220 7 6 4.1482 2.5557 0.1233 8 8 3.5245 3.4515 0.6414 9 8 5.3867 2.7820 -0.3420 10 6 5.9129 4.1267 -0.1893 11 6 7.3043 4.1901 -0.7648 12 6 8.3962 3.9132 0.0432 13 6 9.6715 3.9733 -0.4704 14 6 9.8642 4.3063 -1.8239 15 6 11.1695 4.3650 -2.3642 16 1 12.0137 4.5534 -1.7173 17 6 11.3676 4.1787 -3.7369 18 7 10.4349 3.6172 -4.4622 19 14 12.9641 4.7320 -4.5337 20 1 13.9092 3.5882 -4.5950 21 1 12.6879 5.2201 -5.9087 22 1 13.5643 5.8276 -3.7308 23 6 8.7480 4.5802 -2.6359 24 6 7.4822 4.5202 -2.0995 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.6887 1.8463 0.8900 29 1 1.6888 1.8464 -0.8900 30 1 3.6515 0.7807 2.1123 31 1 3.5359 -0.6727 1.0911 32 1 5.0656 0.2334 1.1805 33 1 3.7177 1.0752 -2.0145 34 1 5.9456 4.3860 0.8690 35 1 5.2689 4.8309 -0.7161 36 1 8.2457 3.6531 1.0805 37 1 10.5210 3.7613 0.1619 38 1 10.5721 3.4885 -5.4138 39 1 8.8844 4.8364 -3.6762 40 1 6.6241 4.7303 -2.7207 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000785343463.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:33 Heat of formation + Delta-G solvation = -184.384032 kcal Electronic energy + Delta-G solvation = -23095.580820 eV Core-core repulsion = 19453.566132 eV Total energy + Delta-G solvation = -3642.014687 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.92549 -39.74996 -39.23829 -37.64537 -37.56523 -35.69019 -32.94411 -32.53408 -31.24202 -29.08491 -28.49135 -26.95095 -25.92568 -24.36109 -22.96458 -21.87880 -21.45398 -19.69619 -19.27734 -18.19752 -17.72333 -17.38406 -17.25086 -16.86358 -16.81109 -16.13414 -15.68105 -15.58979 -15.06987 -14.91457 -14.53540 -14.17867 -13.92945 -13.85178 -13.55990 -13.50446 -13.32752 -13.15901 -12.87794 -12.83111 -12.68370 -12.61263 -12.41441 -12.10601 -11.78501 -11.72015 -11.56318 -11.30924 -11.14838 -11.00960 -10.71623 -9.44512 -9.33960 -8.69385 -6.40366 0.68631 0.90258 1.10310 1.35845 1.39747 1.53327 1.66499 2.19255 2.63703 2.87475 3.05779 3.38863 3.64339 3.66493 3.80588 4.04740 4.08222 4.29516 4.36361 4.44428 4.47106 4.53255 4.53719 4.56200 4.69812 4.73942 4.86615 4.99513 5.11050 5.11353 5.28921 5.35434 5.39618 5.64252 5.86957 6.03971 6.04721 6.12783 6.31251 6.38053 6.63449 6.66616 6.87746 6.96227 8.27418 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.030787 B = 0.002880 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.256488 B = 9719.041311 C =10082.652699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.394 6.394 3 C 0.054 3.946 4 C 0.152 3.848 5 C -0.136 4.136 6 O -0.540 6.540 7 C 0.438 3.562 8 O -0.526 6.526 9 O -0.348 6.348 10 C 0.137 3.863 11 C -0.232 4.232 12 C -0.065 4.065 13 C -0.246 4.246 14 C 0.088 3.912 15 C -0.493 4.493 16 H 0.080 0.920 17 C 0.035 3.965 18 N -0.817 5.817 19 Si 0.984 3.016 20 H -0.262 1.262 21 H -0.265 1.265 22 H -0.258 1.258 23 C -0.194 4.194 24 C -0.079 4.079 25 H 0.103 0.897 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.088 0.912 31 H 0.096 0.904 32 H 0.065 0.935 33 H 0.394 0.606 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.117 0.883 37 H 0.102 0.898 38 H 0.291 0.709 39 H 0.105 0.895 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.313 -4.354 5.386 16.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.314 6.314 3 C -0.023 4.023 4 C 0.109 3.891 5 C -0.193 4.193 6 O -0.348 6.348 7 C 0.281 3.719 8 O -0.417 6.417 9 O -0.264 6.264 10 C 0.065 3.935 11 C -0.233 4.233 12 C -0.084 4.084 13 C -0.266 4.266 14 C 0.085 3.915 15 C -0.521 4.521 16 H 0.098 0.902 17 C -0.181 4.181 18 N -0.443 5.443 19 Si 0.805 3.195 20 H -0.187 1.187 21 H -0.189 1.189 22 H -0.181 1.181 23 C -0.213 4.213 24 C -0.097 4.097 25 H 0.121 0.879 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.096 0.904 29 H 0.086 0.914 30 H 0.107 0.893 31 H 0.115 0.885 32 H 0.084 0.916 33 H 0.244 0.756 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.135 0.865 37 H 0.120 0.880 38 H 0.102 0.898 39 H 0.122 0.878 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -15.171 -4.756 5.698 16.889 hybrid contribution 0.344 1.028 -0.870 1.390 sum -14.827 -3.728 4.828 16.033 Atomic orbital electron populations 1.23009 0.78842 1.04274 1.01076 1.87865 1.21713 1.26151 1.95624 1.22843 0.90430 0.85973 1.03085 1.21099 0.92472 0.85881 0.89668 1.21742 1.02714 1.00881 0.93949 1.86656 1.81177 1.51857 1.15094 1.24913 0.80417 0.91833 0.74702 1.90632 1.62734 1.46578 1.41730 1.86776 1.30487 1.36197 1.72912 1.21683 0.91587 0.79597 1.00664 1.18985 0.92494 1.16811 0.94988 1.20716 0.92206 0.96951 0.98481 1.21177 0.96336 1.12469 0.96597 1.18052 0.94065 0.87356 0.92017 1.19931 0.93959 1.44327 0.93923 0.90211 1.26832 1.02172 0.91646 0.97496 1.69871 1.36009 1.29445 1.08926 0.85160 0.76933 0.79590 0.77854 1.18658 1.18905 1.18140 1.21265 0.92307 1.07735 1.00031 1.20773 0.96352 0.98471 0.94113 0.87865 0.92888 0.93128 0.90434 0.91443 0.89278 0.88545 0.91579 0.75621 0.90666 0.90872 0.86494 0.87955 0.89836 0.87752 0.87394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 11.01 113.37 1.25 1.55 16 2 O -0.39 -7.91 9.79 -144.34 -1.41 -9.33 16 3 C 0.05 1.10 4.70 71.98 0.34 1.44 16 4 C 0.15 3.77 1.15 -11.54 -0.01 3.76 16 5 C -0.14 -3.08 8.63 71.98 0.62 -2.46 16 6 O -0.54 -14.30 12.74 -129.30 -1.65 -15.95 16 7 C 0.44 13.23 6.80 71.24 0.48 13.71 16 8 O -0.53 -17.01 15.74 21.95 0.35 -16.67 16 9 O -0.35 -12.37 9.96 -46.44 -0.46 -12.84 16 10 C 0.14 4.91 5.58 71.24 0.40 5.31 16 11 C -0.23 -9.99 5.54 -19.67 -0.11 -10.10 16 12 C -0.07 -2.88 9.67 22.22 0.21 -2.67 16 13 C -0.25 -12.13 9.80 22.73 0.22 -11.91 16 14 C 0.09 4.74 5.57 -21.29 -0.12 4.62 16 15 C -0.49 -26.33 9.05 23.46 0.21 -26.12 16 16 H 0.08 4.08 7.91 -2.91 -0.02 4.06 16 17 C 0.03 1.72 5.14 85.26 0.44 2.16 16 18 N -0.82 -42.29 10.97 21.82 0.24 -42.05 16 19 Si 0.98 37.39 29.59 68.60 2.03 39.42 16 20 H -0.26 -9.57 7.11 99.48 0.71 -8.87 16 21 H -0.26 -9.54 7.11 99.48 0.71 -8.84 16 22 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 23 C -0.19 -10.20 8.70 22.73 0.20 -10.00 16 24 C -0.08 -3.65 9.67 22.22 0.21 -3.43 16 25 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.08 1.53 7.69 -2.39 -0.02 1.51 16 29 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 30 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.10 2.06 7.56 -2.39 -0.02 2.04 16 32 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.39 7.91 9.04 -74.06 -0.67 7.24 16 34 H 0.08 2.50 8.07 -2.39 -0.02 2.48 16 35 H 0.07 2.46 8.07 -2.39 -0.02 2.44 16 36 H 0.12 4.42 8.06 -2.91 -0.02 4.39 16 37 H 0.10 4.72 8.06 -2.91 -0.02 4.70 16 38 H 0.29 13.50 8.30 -92.71 -0.77 12.73 16 39 H 0.10 5.69 6.18 -2.91 -0.02 5.68 16 40 H 0.11 4.45 8.06 -2.91 -0.02 4.42 16 Total: -1.00 -63.67 346.93 3.82 -59.84 By element: Atomic # 1 Polarization: 31.31 SS G_CDS: 0.38 Total: 31.69 kcal Atomic # 6 Polarization: -38.48 SS G_CDS: 4.35 Total: -34.13 kcal Atomic # 7 Polarization: -42.29 SS G_CDS: 0.24 Total: -42.05 kcal Atomic # 8 Polarization: -51.60 SS G_CDS: -3.18 Total: -54.78 kcal Atomic # 14 Polarization: 37.39 SS G_CDS: 2.03 Total: 39.42 kcal Total: -63.67 3.82 -59.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785343463.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.539 kcal (2) G-P(sol) polarization free energy of solvation -63.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds