Wall clock time and date at job start Tue Mar 31 2020 07:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.58808 * 2 1 4 4 C 1.53191 * 109.58178 * 120.28545 * 2 1 3 5 5 C 1.53036 * 109.31749 * 65.15182 * 4 2 1 6 6 C 1.53034 * 109.53994 * 61.36059 * 5 4 2 7 7 H 1.09005 * 109.49703 * 58.61875 * 6 5 4 8 8 C 1.53004 * 109.50069 * 178.68700 * 6 5 4 9 9 F 1.39897 * 109.46952 * 60.00026 * 8 6 5 10 10 F 1.39896 * 109.46656 * 300.00181 * 8 6 5 11 11 F 1.39897 * 109.47069 * 180.02562 * 8 6 5 12 12 C 1.53194 * 109.31457 * 298.63943 * 6 5 4 13 13 N 1.46922 * 109.58416 * 239.57133 * 2 1 3 14 14 C 1.34776 * 120.63024 * 113.82421 * 13 2 1 15 15 O 1.21583 * 120.00128 * 354.96789 * 14 13 2 16 16 N 1.34781 * 119.99925 * 174.96489 * 14 13 2 17 17 C 1.46494 * 119.99899 * 185.07500 * 16 14 13 18 18 C 1.50701 * 109.47356 * 179.97438 * 17 16 14 19 19 H 1.08004 * 119.99764 * 0.02562 * 18 17 16 20 20 C 1.37877 * 120.00290 * 179.97438 * 18 17 16 21 21 N 1.31516 * 119.99971 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00027 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47186 * 0.02562 * 22 20 18 24 24 H 1.48507 * 109.46903 * 120.00234 * 22 20 18 25 25 H 1.48494 * 109.47557 * 240.00552 * 22 20 18 26 26 H 1.09002 * 109.47083 * 299.72159 * 1 2 3 27 27 H 1.09001 * 109.46986 * 59.71267 * 1 2 3 28 28 H 1.09003 * 109.47608 * 179.71792 * 1 2 3 29 29 H 1.09004 * 109.49838 * 305.19560 * 4 2 1 30 30 H 1.09008 * 109.52326 * 185.11637 * 4 2 1 31 31 H 1.09002 * 109.45592 * 301.34147 * 5 4 2 32 32 H 1.08997 * 109.46449 * 181.38586 * 5 4 2 33 33 H 1.09004 * 109.58991 * 174.42220 * 12 6 5 34 34 H 1.08996 * 109.58493 * 294.84452 * 12 6 5 35 35 H 0.97001 * 120.00222 * 5.07211 * 16 14 13 36 36 H 1.08997 * 109.47627 * 299.99899 * 17 16 14 37 37 H 1.09007 * 109.47442 * 60.00126 * 17 16 14 38 38 H 0.97003 * 119.99981 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0434 -0.7279 1.2463 5 6 1.6413 -2.2026 1.1729 6 6 2.2798 -2.8465 -0.0598 7 1 3.3638 -2.7480 -0.0014 8 6 1.9039 -4.3287 -0.1144 9 9 0.5127 -4.4544 -0.1908 10 9 2.3674 -4.9700 1.0392 11 9 2.4884 -4.9168 -1.2412 12 6 1.7690 -2.1427 -1.3210 13 7 2.0225 -0.7011 -1.1936 14 6 2.6940 -0.0344 -2.1533 15 8 2.8181 1.1729 -2.0816 16 7 3.2280 -0.7062 -3.1926 17 6 4.0516 0.0009 -4.1764 18 6 4.5233 -0.9704 -5.2277 19 1 4.2378 -2.0103 -5.1691 20 6 5.3185 -0.5312 -6.2649 21 7 5.6658 0.7353 -6.3365 22 14 5.9039 -1.7353 -7.5675 23 1 5.3793 -3.0902 -7.2606 24 1 5.4087 -1.3032 -8.8992 25 1 7.3884 -1.7697 -7.5787 26 1 -0.3633 0.5095 0.8925 27 1 -0.3633 0.5183 -0.8874 28 1 -0.3634 -1.0276 -0.0051 29 1 1.6074 -0.2758 2.1372 30 1 3.1297 -0.6489 1.2928 31 1 0.5564 -2.2800 1.1022 32 1 1.9841 -2.7177 2.0703 33 1 2.2943 -2.5303 -2.1940 34 1 0.6986 -2.3174 -1.4287 35 1 3.0670 -1.6579 -3.2893 36 1 3.4612 0.7873 -4.6466 37 1 4.9141 0.4431 -3.6776 38 1 6.2256 1.0442 -7.0660 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787351635.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:52 Heat of formation + Delta-G solvation = -191.749608 kcal Electronic energy + Delta-G solvation = -25020.339272 eV Core-core repulsion = 20868.441201 eV Total energy + Delta-G solvation = -4151.898072 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -50.28297 -47.76708 -47.73261 -40.27082 -37.68832 -34.42980 -33.22833 -33.02812 -31.83997 -28.44960 -27.05536 -25.90300 -24.45198 -22.93342 -22.00566 -20.56177 -19.14839 -18.63869 -18.43102 -17.95003 -17.36208 -16.11930 -15.83114 -15.41665 -14.89531 -14.73748 -14.65894 -14.53267 -14.17399 -13.99233 -13.92535 -13.84492 -13.69985 -13.55605 -13.17850 -12.92375 -12.82809 -12.23579 -12.02942 -11.80835 -11.80147 -11.60015 -11.05827 -11.00907 -10.92728 -10.89658 -10.58208 -10.28969 -9.43540 -9.34983 -8.75586 -8.54741 -7.79517 -6.16046 -4.22610 2.48709 3.02770 3.24298 3.31755 3.35043 3.60464 3.67881 3.80706 3.89832 4.30413 4.42372 4.52529 4.66226 4.71723 4.80686 4.93839 5.18077 5.20379 5.30172 5.34580 5.41876 5.50375 5.56877 5.65770 5.75172 5.88777 6.04170 6.25632 6.66443 7.06446 7.46370 7.50577 7.55195 7.81133 8.00094 8.72438 8.85592 9.25765 9.45447 10.94187 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.016219 B = 0.004763 C = 0.003886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.976352 B = 5877.448484 C = 7203.470849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.151 3.849 3 H 0.105 0.895 4 C -0.125 4.125 5 C -0.117 4.117 6 C -0.151 4.151 7 H 0.121 0.879 8 C 0.457 3.543 9 F -0.182 7.182 10 F -0.183 7.183 11 F -0.179 7.179 12 C 0.118 3.882 13 N -0.629 5.629 14 C 0.699 3.301 15 O -0.593 6.593 16 N -0.729 5.729 17 C 0.265 3.735 18 C -0.541 4.541 19 H 0.063 0.937 20 C 0.064 3.936 21 N -0.885 5.885 22 Si 0.903 3.097 23 H -0.272 1.272 24 H -0.282 1.282 25 H -0.282 1.282 26 H 0.065 0.935 27 H 0.061 0.939 28 H 0.057 0.943 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.093 0.907 34 H 0.078 0.922 35 H 0.385 0.615 36 H 0.026 0.974 37 H 0.025 0.975 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.983 -9.017 16.372 21.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.047 3.953 3 H 0.123 0.877 4 C -0.163 4.163 5 C -0.155 4.155 6 C -0.171 4.171 7 H 0.139 0.861 8 C 0.403 3.597 9 F -0.164 7.164 10 F -0.165 7.165 11 F -0.161 7.161 12 C -0.007 4.007 13 N -0.368 5.368 14 C 0.400 3.600 15 O -0.471 6.471 16 N -0.383 5.383 17 C 0.144 3.856 18 C -0.580 4.580 19 H 0.081 0.919 20 C -0.140 4.140 21 N -0.523 5.523 22 Si 0.730 3.270 23 H -0.196 1.196 24 H -0.208 1.208 25 H -0.208 1.208 26 H 0.084 0.916 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.100 0.900 30 H 0.091 0.909 31 H 0.099 0.901 32 H 0.096 0.904 33 H 0.112 0.888 34 H 0.096 0.904 35 H 0.220 0.780 36 H 0.044 0.956 37 H 0.042 0.958 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.730 -7.982 16.239 20.545 hybrid contribution 0.287 -1.474 -0.838 1.719 sum -9.443 -9.456 15.401 20.391 Atomic orbital electron populations 1.22174 0.95416 1.02057 1.02463 1.20988 0.93666 0.97735 0.82902 0.87670 1.21912 1.02134 0.93989 0.98262 1.21612 1.01503 0.96824 0.95539 1.22935 1.05394 0.88152 1.00645 0.86091 1.20491 0.74621 0.91058 0.73551 1.93169 1.30421 1.96810 1.95982 1.93173 1.88623 1.84307 1.50379 1.93221 1.84066 1.86422 1.52341 1.21455 1.01515 0.82115 0.95657 1.47294 1.60687 1.06855 1.22001 1.16034 0.78474 0.85356 0.80090 1.90870 1.65438 1.12060 1.78742 1.45937 1.53940 1.12061 1.26341 1.19014 0.89095 0.92482 0.84961 1.21250 1.32497 0.95204 1.09042 0.91935 1.24934 0.95719 0.95402 0.97896 1.69989 1.35901 1.14240 1.32126 0.86368 0.78513 0.80901 0.81173 1.19623 1.20794 1.20798 0.91631 0.92000 0.92420 0.89954 0.90937 0.90131 0.90439 0.88848 0.90359 0.77976 0.95564 0.95750 0.92511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.65 9.02 37.16 0.34 -1.31 16 2 C 0.15 1.84 3.19 -67.60 -0.22 1.63 16 3 H 0.11 1.53 7.04 -51.93 -0.37 1.16 16 4 C -0.12 -1.14 5.55 -26.61 -0.15 -1.28 16 5 C -0.12 -0.97 4.72 -26.70 -0.13 -1.10 16 6 C -0.15 -1.49 2.31 -90.50 -0.21 -1.70 16 7 H 0.12 1.22 8.14 -51.93 -0.42 0.79 16 8 C 0.46 4.69 2.69 37.16 0.10 4.79 16 9 F -0.18 -1.88 16.22 2.25 0.04 -1.85 16 10 F -0.18 -1.91 16.77 2.25 0.04 -1.88 16 11 F -0.18 -2.10 16.92 2.25 0.04 -2.06 16 12 C 0.12 1.39 5.05 -3.71 -0.02 1.37 16 13 N -0.63 -9.29 2.68 -170.91 -0.46 -9.75 16 14 C 0.70 14.23 8.30 -86.91 -0.72 13.51 16 15 O -0.59 -14.46 15.79 5.29 0.08 -14.38 16 16 N -0.73 -15.57 5.46 -66.42 -0.36 -15.93 16 17 C 0.27 7.07 5.43 -5.20 -0.03 7.04 16 18 C -0.54 -14.70 9.28 -34.44 -0.32 -15.02 16 19 H 0.06 1.60 7.60 -52.48 -0.40 1.20 16 20 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 21 N -0.89 -26.05 13.29 55.43 0.74 -25.31 16 22 Si 0.90 20.89 29.54 -169.99 -5.02 15.86 16 23 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.06 0.52 5.72 -51.93 -0.30 0.23 16 29 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.73 8.14 -51.92 -0.42 0.30 16 31 H 0.08 0.63 6.20 -51.93 -0.32 0.30 16 32 H 0.08 0.56 7.77 -51.93 -0.40 0.16 16 33 H 0.09 1.16 5.40 -51.93 -0.28 0.88 16 34 H 0.08 0.83 7.00 -51.93 -0.36 0.47 16 35 H 0.39 7.18 5.78 -40.82 -0.24 6.94 16 36 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 316.79 15.07 4.77 4.77 Total: -1.00 -31.79 316.79 -6.34 -38.13 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -4.76 Total: 2.78 kcal Atomic # 6 Polarization: 11.05 SS G_CDS: -1.45 Total: 9.60 kcal Atomic # 7 Polarization: -50.91 SS G_CDS: -0.08 Total: -50.99 kcal Atomic # 8 Polarization: -14.46 SS G_CDS: 0.08 Total: -14.38 kcal Atomic # 9 Polarization: -5.90 SS G_CDS: 0.11 Total: -5.79 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -31.79 -6.34 -38.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787351635.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.615 kcal (2) G-P(sol) polarization free energy of solvation -31.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds