Wall clock time and date at job start Tue Mar 31 2020 07:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.58808 * 2 1 4 4 C 1.53191 * 109.58178 * 120.28545 * 2 1 3 5 5 C 1.53036 * 109.31749 * 65.15182 * 4 2 1 6 6 C 1.53034 * 109.53994 * 61.36059 * 5 4 2 7 7 H 1.09005 * 109.49703 * 58.61875 * 6 5 4 8 8 C 1.53004 * 109.50069 * 178.68700 * 6 5 4 9 9 F 1.39897 * 109.46952 * 60.00026 * 8 6 5 10 10 F 1.39896 * 109.46656 * 300.00181 * 8 6 5 11 11 F 1.39897 * 109.47069 * 180.02562 * 8 6 5 12 12 C 1.53194 * 109.31457 * 298.63943 * 6 5 4 13 13 N 1.46922 * 109.58416 * 239.57133 * 2 1 3 14 14 C 1.34776 * 120.63024 * 113.82421 * 13 2 1 15 15 O 1.21583 * 120.00128 * 354.96789 * 14 13 2 16 16 N 1.34781 * 119.99925 * 174.96489 * 14 13 2 17 17 C 1.46494 * 119.99899 * 185.07500 * 16 14 13 18 18 C 1.50701 * 109.47356 * 179.97438 * 17 16 14 19 19 H 1.08004 * 119.99764 * 0.02562 * 18 17 16 20 20 C 1.37877 * 120.00290 * 179.97438 * 18 17 16 21 21 N 1.31516 * 119.99971 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00027 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47186 * 0.02562 * 22 20 18 24 24 H 1.48507 * 109.46903 * 120.00234 * 22 20 18 25 25 H 1.48494 * 109.47557 * 240.00552 * 22 20 18 26 26 H 1.09002 * 109.47083 * 299.72159 * 1 2 3 27 27 H 1.09001 * 109.46986 * 59.71267 * 1 2 3 28 28 H 1.09003 * 109.47608 * 179.71792 * 1 2 3 29 29 H 1.09004 * 109.49838 * 305.19560 * 4 2 1 30 30 H 1.09008 * 109.52326 * 185.11637 * 4 2 1 31 31 H 1.09002 * 109.45592 * 301.34147 * 5 4 2 32 32 H 1.08997 * 109.46449 * 181.38586 * 5 4 2 33 33 H 1.09004 * 109.58991 * 174.42220 * 12 6 5 34 34 H 1.08996 * 109.58493 * 294.84452 * 12 6 5 35 35 H 0.97001 * 120.00222 * 5.07211 * 16 14 13 36 36 H 1.08997 * 109.47627 * 299.99899 * 17 16 14 37 37 H 1.09007 * 109.47442 * 60.00126 * 17 16 14 38 38 H 0.97003 * 119.99981 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0434 -0.7279 1.2463 5 6 1.6413 -2.2026 1.1729 6 6 2.2798 -2.8465 -0.0598 7 1 3.3638 -2.7480 -0.0014 8 6 1.9039 -4.3287 -0.1144 9 9 0.5127 -4.4544 -0.1908 10 9 2.3674 -4.9700 1.0392 11 9 2.4884 -4.9168 -1.2412 12 6 1.7690 -2.1427 -1.3210 13 7 2.0225 -0.7011 -1.1936 14 6 2.6940 -0.0344 -2.1533 15 8 2.8181 1.1729 -2.0816 16 7 3.2280 -0.7062 -3.1926 17 6 4.0516 0.0009 -4.1764 18 6 4.5233 -0.9704 -5.2277 19 1 4.2378 -2.0103 -5.1691 20 6 5.3185 -0.5312 -6.2649 21 7 5.6658 0.7353 -6.3365 22 14 5.9039 -1.7353 -7.5675 23 1 5.3793 -3.0902 -7.2606 24 1 5.4087 -1.3032 -8.8992 25 1 7.3884 -1.7697 -7.5787 26 1 -0.3633 0.5095 0.8925 27 1 -0.3633 0.5183 -0.8874 28 1 -0.3634 -1.0276 -0.0051 29 1 1.6074 -0.2758 2.1372 30 1 3.1297 -0.6489 1.2928 31 1 0.5564 -2.2800 1.1022 32 1 1.9841 -2.7177 2.0703 33 1 2.2943 -2.5303 -2.1940 34 1 0.6986 -2.3174 -1.4287 35 1 3.0670 -1.6579 -3.2893 36 1 3.4612 0.7873 -4.6466 37 1 4.9141 0.4431 -3.6776 38 1 6.2256 1.0442 -7.0660 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787351635.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:51 Heat of formation + Delta-G solvation = -212.332711 kcal Electronic energy + Delta-G solvation = -25021.231823 eV Core-core repulsion = 20868.441201 eV Total energy + Delta-G solvation = -4152.790622 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -51.11361 -48.59526 -48.57145 -41.59372 -39.03282 -36.27642 -34.70145 -34.28412 -33.35324 -29.53981 -28.84254 -26.91224 -25.45860 -24.68684 -23.00924 -21.95694 -20.47521 -19.83311 -19.27764 -18.87852 -18.42817 -17.99790 -17.29880 -16.60607 -16.55552 -16.04688 -15.66782 -15.46287 -15.27978 -15.00884 -14.98316 -14.74113 -14.69527 -14.61004 -14.54787 -14.18603 -13.86636 -13.79582 -13.63593 -13.07796 -12.88912 -12.75614 -12.72138 -12.43239 -12.21534 -11.94440 -11.80397 -11.48846 -11.41893 -11.13963 -10.82096 -10.09088 -9.47635 -8.28980 -6.45268 1.42772 1.44505 1.50502 1.58533 1.86202 2.14997 2.37777 2.73365 2.91148 3.01775 3.06196 3.15535 3.66270 3.68047 3.89444 3.92367 4.07957 4.30371 4.35662 4.50335 4.59638 4.63286 4.83743 4.94865 4.95900 5.02017 5.12095 5.16206 5.26387 5.44066 5.47560 5.54211 5.71925 5.84034 6.05077 6.66030 7.11814 7.24874 7.64435 8.83516 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.016219 B = 0.004763 C = 0.003886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.976352 B = 5877.448484 C = 7203.470849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.140 3.860 3 H 0.075 0.925 4 C -0.115 4.115 5 C -0.113 4.113 6 C -0.145 4.145 7 H 0.119 0.881 8 C 0.464 3.536 9 F -0.180 7.180 10 F -0.182 7.182 11 F -0.189 7.189 12 C 0.112 3.888 13 N -0.617 5.617 14 C 0.696 3.304 15 O -0.641 6.641 16 N -0.725 5.725 17 C 0.285 3.715 18 C -0.554 4.554 19 H 0.081 0.919 20 C 0.006 3.994 21 N -0.929 5.929 22 Si 0.984 3.016 23 H -0.255 1.255 24 H -0.278 1.278 25 H -0.278 1.278 26 H 0.092 0.908 27 H 0.038 0.962 28 H 0.075 0.925 29 H 0.112 0.888 30 H 0.061 0.939 31 H 0.094 0.906 32 H 0.097 0.903 33 H 0.085 0.915 34 H 0.098 0.902 35 H 0.400 0.600 36 H -0.014 1.014 37 H -0.013 1.013 38 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.997 -11.622 17.534 23.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.038 3.962 3 H 0.093 0.907 4 C -0.153 4.153 5 C -0.150 4.150 6 C -0.165 4.165 7 H 0.137 0.863 8 C 0.409 3.591 9 F -0.161 7.161 10 F -0.163 7.163 11 F -0.171 7.171 12 C -0.012 4.012 13 N -0.354 5.354 14 C 0.397 3.603 15 O -0.523 6.523 16 N -0.381 5.381 17 C 0.162 3.838 18 C -0.592 4.592 19 H 0.099 0.901 20 C -0.193 4.193 21 N -0.568 5.568 22 Si 0.807 3.193 23 H -0.178 1.178 24 H -0.204 1.204 25 H -0.203 1.203 26 H 0.111 0.889 27 H 0.057 0.943 28 H 0.093 0.907 29 H 0.131 0.869 30 H 0.079 0.921 31 H 0.113 0.887 32 H 0.115 0.885 33 H 0.103 0.897 34 H 0.116 0.884 35 H 0.238 0.762 36 H 0.004 0.996 37 H 0.005 0.995 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.793 -10.651 17.463 23.128 hybrid contribution 0.548 -0.631 -1.112 1.391 sum -10.245 -11.282 16.351 22.352 Atomic orbital electron populations 1.22125 0.93262 1.03208 1.02711 1.21293 0.95331 0.96564 0.83058 0.90697 1.21863 1.01561 0.94524 0.97391 1.21657 1.02229 0.95807 0.95296 1.22863 1.05457 0.87928 1.00284 0.86294 1.20402 0.74591 0.90845 0.73248 1.93177 1.30214 1.96799 1.95954 1.93180 1.88635 1.84266 1.50211 1.93207 1.84280 1.86615 1.52961 1.21657 1.02781 0.80054 0.96704 1.47261 1.58850 1.08200 1.21120 1.16195 0.78622 0.84869 0.80596 1.90831 1.67235 1.14388 1.79857 1.45541 1.53852 1.12568 1.26131 1.18425 0.87731 0.92070 0.85575 1.21596 1.32575 0.95910 1.09118 0.90121 1.26024 0.95598 0.97300 1.00428 1.70143 1.36713 1.16703 1.33240 0.85125 0.77889 0.78744 0.77543 1.17807 1.20390 1.20333 0.88931 0.94316 0.90660 0.86931 0.92062 0.88727 0.88452 0.89676 0.88361 0.76194 0.99596 0.99487 0.92208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.80 9.02 71.98 0.65 -2.15 16 2 C 0.14 3.30 3.19 44.98 0.14 3.44 16 3 H 0.07 2.24 7.04 -2.39 -0.02 2.22 16 4 C -0.12 -1.80 5.55 30.67 0.17 -1.63 16 5 C -0.11 -1.45 4.72 30.62 0.14 -1.31 16 6 C -0.14 -2.50 2.31 -10.72 -0.02 -2.52 16 7 H 0.12 2.16 8.14 -2.38 -0.02 2.14 16 8 C 0.46 8.26 2.69 71.98 0.19 8.45 16 9 F -0.18 -3.14 16.22 44.97 0.73 -2.41 16 10 F -0.18 -3.26 16.77 44.97 0.75 -2.50 16 11 F -0.19 -4.06 16.92 44.97 0.76 -3.30 16 12 C 0.11 2.46 5.05 86.36 0.44 2.89 16 13 N -0.62 -18.07 2.68 -812.89 -2.18 -20.25 16 14 C 0.70 29.41 8.30 179.05 1.49 30.89 16 15 O -0.64 -33.18 15.79 -3.98 -0.06 -33.24 16 16 N -0.73 -32.05 5.46 -482.30 -2.63 -34.68 16 17 C 0.29 15.99 5.43 85.63 0.47 16.45 16 18 C -0.55 -30.52 9.28 25.60 0.24 -30.28 16 19 H 0.08 4.05 7.60 -2.91 -0.02 4.03 16 20 C 0.01 0.35 5.46 84.65 0.46 0.81 16 21 N -0.93 -56.29 13.29 21.45 0.28 -56.01 16 22 Si 0.98 42.62 29.54 68.60 2.03 44.65 16 23 H -0.25 -10.24 7.11 99.48 0.71 -9.54 16 24 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 25 H -0.28 -11.78 7.11 99.48 0.71 -11.08 16 26 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.07 1.10 5.72 -2.39 -0.01 1.09 16 29 H 0.11 1.16 8.14 -2.38 -0.02 1.14 16 30 H 0.06 1.12 8.14 -2.38 -0.02 1.11 16 31 H 0.09 1.02 6.20 -2.39 -0.01 1.01 16 32 H 0.10 0.98 7.77 -2.39 -0.02 0.96 16 33 H 0.09 2.03 5.40 -2.38 -0.01 2.01 16 34 H 0.10 1.83 7.00 -2.39 -0.02 1.81 16 35 H 0.40 15.01 5.78 -92.71 -0.54 14.48 16 36 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 37 H -0.01 -0.80 8.14 -2.38 -0.02 -0.82 16 38 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 Total: -1.00 -72.36 316.79 4.61 -67.76 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: 0.56 Total: 14.95 kcal Atomic # 6 Polarization: 20.68 SS G_CDS: 4.36 Total: 25.04 kcal Atomic # 7 Polarization: -106.41 SS G_CDS: -4.53 Total: -110.94 kcal Atomic # 8 Polarization: -33.18 SS G_CDS: -0.06 Total: -33.24 kcal Atomic # 9 Polarization: -10.47 SS G_CDS: 2.24 Total: -8.22 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Total: -72.36 4.61 -67.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787351635.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.575 kcal (2) G-P(sol) polarization free energy of solvation -72.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -216.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -212.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds