Wall clock time and date at job start Tue Mar 31 2020 06:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35705 * 117.00011 * 2 1 4 4 C 1.39200 * 119.85465 * 359.97438 * 3 2 1 5 5 C 1.36517 * 120.38155 * 180.02562 * 4 3 2 6 6 C 1.39933 * 120.07978 * 359.97438 * 5 4 3 7 7 C 1.47112 * 120.14225 * 179.97438 * 6 5 4 8 8 O 1.21577 * 119.99564 * 180.02562 * 7 6 5 9 9 O 1.34805 * 119.99930 * 0.02562 * 7 6 5 10 10 C 1.34875 * 116.99681 * 179.97438 * 9 7 6 11 11 H 1.08007 * 119.99817 * 0.02562 * 10 9 7 12 12 C 1.38779 * 120.00357 * 179.97438 * 10 9 7 13 13 N 1.31437 * 119.99425 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 120.00347 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47083 * 60.00317 * 14 12 10 16 16 H 1.48497 * 109.47199 * 180.02562 * 14 12 10 17 17 H 1.48496 * 109.47217 * 300.00403 * 14 12 10 18 18 C 1.40409 * 119.71091 * 359.97438 * 6 5 4 19 19 O 1.35652 * 120.18717 * 179.97438 * 18 6 5 20 20 C 1.42903 * 116.99750 * 179.97438 * 19 18 6 21 21 C 1.53000 * 109.46726 * 180.02562 * 20 19 18 22 22 C 1.53002 * 109.46776 * 174.99924 * 21 20 19 23 23 C 1.53005 * 109.46867 * 294.99609 * 21 20 19 24 24 C 1.38457 * 119.62638 * 0.25042 * 18 6 5 25 25 H 1.09005 * 109.46546 * 180.02562 * 1 2 3 26 26 H 1.08992 * 109.47641 * 300.00556 * 1 2 3 27 27 H 1.09000 * 109.47005 * 60.00855 * 1 2 3 28 28 H 1.08000 * 119.80705 * 0.02562 * 4 3 2 29 29 H 1.08006 * 119.96180 * 179.97438 * 5 4 3 30 30 H 0.97004 * 119.99976 * 179.97438 * 13 12 10 31 31 H 1.09002 * 109.47382 * 59.99849 * 20 19 18 32 32 H 1.09001 * 109.46938 * 299.99835 * 20 19 18 33 33 H 1.08990 * 109.47170 * 54.99820 * 21 20 19 34 34 H 1.09000 * 109.47312 * 60.00037 * 22 21 20 35 35 H 1.09004 * 109.46964 * 179.97438 * 22 21 20 36 36 H 1.08994 * 109.47359 * 299.99610 * 22 21 20 37 37 H 1.09004 * 109.46908 * 180.02562 * 23 21 20 38 38 H 1.09000 * 109.47443 * 300.00098 * 23 21 20 39 39 H 1.09001 * 109.47099 * 60.00379 * 23 21 20 40 40 H 1.08003 * 120.04586 * 179.72965 * 24 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2091 0.0000 4 6 1.2840 2.3746 -0.0005 5 6 1.8926 3.5967 -0.0011 6 6 3.2891 3.6847 -0.0005 7 6 3.9464 5.0008 -0.0017 8 8 5.1599 5.0742 -0.0017 9 8 3.2030 6.1254 -0.0027 10 6 3.8680 7.2989 -0.0032 11 1 4.9480 7.3075 -0.0032 12 6 3.1645 8.4951 -0.0048 13 7 1.8501 8.4845 -0.0054 14 14 4.0854 10.1203 -0.0062 15 1 4.9390 10.2046 -1.2185 16 1 3.1114 11.2412 -0.0072 17 1 4.9380 10.2072 1.2065 18 6 4.0604 2.5114 0.0011 19 8 5.4149 2.5854 0.0011 20 6 6.1322 1.3495 0.0034 21 6 7.6357 1.6325 0.0037 22 6 8.4026 0.3148 0.1319 23 6 8.0248 2.3238 -1.3047 24 6 3.4306 1.2783 -0.0031 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8898 27 1 -0.3633 0.5137 -0.8901 28 1 0.2059 2.3118 -0.0005 29 1 1.2954 4.4966 -0.0019 30 1 1.3583 9.3206 -0.0061 31 1 5.8702 0.7757 -0.8856 32 1 5.8700 0.7789 0.8944 33 1 7.8833 2.2803 0.8445 34 1 8.1550 -0.3330 -0.7091 35 1 9.4739 0.5164 0.1316 36 1 8.1255 -0.1777 1.0638 37 1 9.0961 2.5251 -1.3047 38 1 7.7772 1.6760 -2.1456 39 1 7.4784 3.2626 -1.3960 40 1 4.0172 0.3715 -0.0063 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000789221345.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:35 Heat of formation + Delta-G solvation = -137.177868 kcal Electronic energy + Delta-G solvation = -23649.350160 eV Core-core repulsion = 20009.382486 eV Total energy + Delta-G solvation = -3639.967674 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.44038 -39.08341 -38.51542 -36.57345 -35.04007 -34.79437 -32.06523 -30.76084 -29.64355 -27.45376 -27.10914 -26.54395 -25.28354 -23.10726 -21.98050 -20.49511 -19.83812 -18.55670 -17.60791 -16.93768 -16.60398 -16.02884 -15.99145 -15.67292 -14.98318 -14.71485 -14.40003 -14.27695 -13.98732 -13.98434 -13.45343 -12.98969 -12.87779 -12.43196 -12.34655 -12.19788 -12.10664 -11.84373 -11.54204 -11.45330 -11.15370 -11.02901 -10.88185 -10.84188 -10.55778 -10.41534 -10.39326 -10.21172 -9.72600 -8.82827 -8.49434 -8.44076 -7.81963 -6.35034 -3.97444 1.29781 1.65152 3.13254 3.20709 3.23291 3.27487 3.43246 3.53737 4.01451 4.40019 4.65469 4.76230 4.83049 4.88979 5.06512 5.07464 5.09082 5.17123 5.25167 5.29581 5.36433 5.38110 5.48525 5.52398 5.63507 5.73182 5.83278 5.84346 5.91723 6.06544 6.09726 6.30671 6.43309 6.51738 6.62600 6.78543 7.02574 7.34475 7.46567 7.71604 8.04581 8.86326 9.14737 9.99144 10.83619 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.011116 B = 0.005188 C = 0.003587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2518.258032 B = 5395.630487 C = 7804.483914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.318 6.318 3 C 0.177 3.823 4 C -0.256 4.256 5 C 0.006 3.994 6 C -0.162 4.162 7 C 0.444 3.556 8 O -0.535 6.535 9 O -0.215 6.215 10 C -0.371 4.371 11 H 0.095 0.905 12 C 0.039 3.961 13 N -0.867 5.867 14 Si 0.943 3.057 15 H -0.270 1.270 16 H -0.280 1.280 17 H -0.270 1.270 18 C 0.215 3.785 19 O -0.266 6.266 20 C 0.055 3.945 21 C -0.093 4.093 22 C -0.144 4.144 23 C -0.148 4.148 24 C -0.261 4.261 25 H 0.097 0.903 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.131 0.869 29 H 0.151 0.849 30 H 0.269 0.731 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.083 0.917 34 H 0.055 0.945 35 H 0.062 0.938 36 H 0.055 0.945 37 H 0.053 0.947 38 H 0.049 0.951 39 H 0.073 0.927 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.371 -17.349 -0.301 17.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.231 6.231 3 C 0.131 3.869 4 C -0.275 4.275 5 C -0.012 4.012 6 C -0.164 4.164 7 C 0.291 3.709 8 O -0.432 6.432 9 O -0.123 6.123 10 C -0.447 4.447 11 H 0.113 0.887 12 C -0.164 4.164 13 N -0.504 5.504 14 Si 0.768 3.232 15 H -0.195 1.195 16 H -0.205 1.205 17 H -0.195 1.195 18 C 0.166 3.834 19 O -0.177 6.177 20 C -0.021 4.021 21 C -0.112 4.112 22 C -0.201 4.201 23 C -0.205 4.205 24 C -0.280 4.280 25 H 0.116 0.884 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.149 0.851 29 H 0.168 0.832 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.102 0.898 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.092 0.908 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 1.730 -17.181 -0.305 17.271 hybrid contribution -0.017 0.630 0.015 0.630 sum 1.713 -16.552 -0.290 16.642 Atomic orbital electron populations 1.23080 0.78201 1.03681 1.01874 1.85977 1.21604 1.27265 1.88207 1.18843 0.91448 0.84023 0.92611 1.20828 1.00186 0.91918 1.14563 1.21006 0.92760 0.98148 0.89313 1.18737 0.92694 0.90170 1.14779 1.20372 0.85911 0.85069 0.79505 1.90674 1.14722 1.87558 1.50213 1.83905 1.38994 1.13187 1.76205 1.21189 0.92519 0.79789 1.51205 0.88746 1.25304 0.95764 0.98782 0.96544 1.69975 1.05694 1.27903 1.46865 0.85750 0.78590 0.79557 0.79319 1.19530 1.20460 1.19536 1.18620 0.82913 0.91586 0.90245 1.86442 1.13950 1.30984 1.86344 1.22990 0.92324 0.85665 1.01071 1.21078 0.91835 0.97774 1.00477 1.21782 1.00256 0.96342 1.01737 1.21822 1.01221 1.01778 0.95704 1.20184 0.92496 0.97008 1.18355 0.88429 0.92333 0.92328 0.85074 0.83151 0.92144 0.92109 0.92166 0.89817 0.92542 0.91874 0.92551 0.92798 0.93149 0.90785 0.84514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.80 101.05 0.99 1.22 16 2 O -0.32 -4.10 10.48 -18.82 -0.20 -4.30 16 3 C 0.18 2.67 6.69 -39.05 -0.26 2.41 16 4 C -0.26 -3.93 8.96 -39.85 -0.36 -4.28 16 5 C 0.01 0.12 9.55 -39.57 -0.38 -0.26 16 6 C -0.16 -3.52 5.89 -104.85 -0.62 -4.14 16 7 C 0.44 11.90 7.82 34.33 0.27 12.17 16 8 O -0.54 -15.28 14.40 -26.66 -0.38 -15.67 16 9 O -0.21 -6.34 8.98 -21.90 -0.20 -6.54 16 10 C -0.37 -11.22 9.65 30.93 0.30 -10.92 16 11 H 0.09 2.88 6.86 -52.48 -0.36 2.52 16 12 C 0.04 1.13 5.49 -17.52 -0.10 1.03 16 13 N -0.87 -25.51 13.67 55.48 0.76 -24.75 16 14 Si 0.94 21.69 29.55 -169.99 -5.02 16.66 16 15 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 16 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 17 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 18 C 0.21 4.11 6.70 -38.68 -0.26 3.85 16 19 O -0.27 -5.09 7.74 -40.56 -0.31 -5.41 16 20 C 0.05 0.75 4.12 37.16 0.15 0.91 16 21 C -0.09 -1.16 3.16 -90.62 -0.29 -1.45 16 22 C -0.14 -1.31 9.19 37.16 0.34 -0.97 16 23 C -0.15 -1.95 9.09 37.16 0.34 -1.61 16 24 C -0.26 -4.14 8.97 -39.32 -0.35 -4.50 16 25 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.47 7.65 -51.93 -0.40 0.08 16 27 H 0.06 0.47 7.65 -51.93 -0.40 0.08 16 28 H 0.13 1.61 6.26 -52.49 -0.33 1.28 16 29 H 0.15 2.93 7.60 -52.48 -0.40 2.53 16 30 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 31 H 0.06 0.74 7.65 -51.93 -0.40 0.35 16 32 H 0.06 0.73 7.68 -51.93 -0.40 0.33 16 33 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 1.23 7.82 -51.93 -0.41 0.83 16 40 H 0.14 1.84 6.31 -52.48 -0.33 1.50 16 LS Contribution 342.01 15.07 5.15 5.15 Total: -1.00 -34.69 342.01 -5.93 -40.62 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -5.51 Total: 0.77 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: -0.22 Total: -6.54 kcal Atomic # 7 Polarization: -25.51 SS G_CDS: 0.76 Total: -24.75 kcal Atomic # 8 Polarization: -30.82 SS G_CDS: -1.09 Total: -31.91 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.69 -5.93 -40.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000789221345.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.562 kcal (2) G-P(sol) polarization free energy of solvation -34.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds