Wall clock time and date at job start Tue Mar 31 2020 06:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35705 * 117.00011 * 2 1 4 4 C 1.39200 * 119.85465 * 359.97438 * 3 2 1 5 5 C 1.36517 * 120.38155 * 180.02562 * 4 3 2 6 6 C 1.39933 * 120.07978 * 359.97438 * 5 4 3 7 7 C 1.47112 * 120.14225 * 179.97438 * 6 5 4 8 8 O 1.21577 * 119.99564 * 180.02562 * 7 6 5 9 9 O 1.34805 * 119.99930 * 0.02562 * 7 6 5 10 10 C 1.34875 * 116.99681 * 179.97438 * 9 7 6 11 11 H 1.08007 * 119.99817 * 0.02562 * 10 9 7 12 12 C 1.38779 * 120.00357 * 179.97438 * 10 9 7 13 13 N 1.31437 * 119.99425 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 120.00347 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47083 * 60.00317 * 14 12 10 16 16 H 1.48497 * 109.47199 * 180.02562 * 14 12 10 17 17 H 1.48496 * 109.47217 * 300.00403 * 14 12 10 18 18 C 1.40409 * 119.71091 * 359.97438 * 6 5 4 19 19 O 1.35652 * 120.18717 * 179.97438 * 18 6 5 20 20 C 1.42903 * 116.99750 * 179.97438 * 19 18 6 21 21 C 1.53000 * 109.46726 * 180.02562 * 20 19 18 22 22 C 1.53002 * 109.46776 * 174.99924 * 21 20 19 23 23 C 1.53005 * 109.46867 * 294.99609 * 21 20 19 24 24 C 1.38457 * 119.62638 * 0.25042 * 18 6 5 25 25 H 1.09005 * 109.46546 * 180.02562 * 1 2 3 26 26 H 1.08992 * 109.47641 * 300.00556 * 1 2 3 27 27 H 1.09000 * 109.47005 * 60.00855 * 1 2 3 28 28 H 1.08000 * 119.80705 * 0.02562 * 4 3 2 29 29 H 1.08006 * 119.96180 * 179.97438 * 5 4 3 30 30 H 0.97004 * 119.99976 * 179.97438 * 13 12 10 31 31 H 1.09002 * 109.47382 * 59.99849 * 20 19 18 32 32 H 1.09001 * 109.46938 * 299.99835 * 20 19 18 33 33 H 1.08990 * 109.47170 * 54.99820 * 21 20 19 34 34 H 1.09000 * 109.47312 * 60.00037 * 22 21 20 35 35 H 1.09004 * 109.46964 * 179.97438 * 22 21 20 36 36 H 1.08994 * 109.47359 * 299.99610 * 22 21 20 37 37 H 1.09004 * 109.46908 * 180.02562 * 23 21 20 38 38 H 1.09000 * 109.47443 * 300.00098 * 23 21 20 39 39 H 1.09001 * 109.47099 * 60.00379 * 23 21 20 40 40 H 1.08003 * 120.04586 * 179.72965 * 24 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2091 0.0000 4 6 1.2840 2.3746 -0.0005 5 6 1.8926 3.5967 -0.0011 6 6 3.2891 3.6847 -0.0005 7 6 3.9464 5.0008 -0.0017 8 8 5.1599 5.0742 -0.0017 9 8 3.2030 6.1254 -0.0027 10 6 3.8680 7.2989 -0.0032 11 1 4.9480 7.3075 -0.0032 12 6 3.1645 8.4951 -0.0048 13 7 1.8501 8.4845 -0.0054 14 14 4.0854 10.1203 -0.0062 15 1 4.9390 10.2046 -1.2185 16 1 3.1114 11.2412 -0.0072 17 1 4.9380 10.2072 1.2065 18 6 4.0604 2.5114 0.0011 19 8 5.4149 2.5854 0.0011 20 6 6.1322 1.3495 0.0034 21 6 7.6357 1.6325 0.0037 22 6 8.4026 0.3148 0.1319 23 6 8.0248 2.3238 -1.3047 24 6 3.4306 1.2783 -0.0031 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8898 27 1 -0.3633 0.5137 -0.8901 28 1 0.2059 2.3118 -0.0005 29 1 1.2954 4.4966 -0.0019 30 1 1.3583 9.3206 -0.0061 31 1 5.8702 0.7757 -0.8856 32 1 5.8700 0.7789 0.8944 33 1 7.8833 2.2803 0.8445 34 1 8.1550 -0.3330 -0.7091 35 1 9.4739 0.5164 0.1316 36 1 8.1255 -0.1777 1.0638 37 1 9.0961 2.5251 -1.3047 38 1 7.7772 1.6760 -2.1456 39 1 7.4784 3.2626 -1.3960 40 1 4.0172 0.3715 -0.0063 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000789221345.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:34 Heat of formation + Delta-G solvation = -158.828628 kcal Electronic energy + Delta-G solvation = -23650.289008 eV Core-core repulsion = 20009.382486 eV Total energy + Delta-G solvation = -3640.906522 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.82363 -40.62426 -40.13972 -37.87259 -36.98520 -36.07603 -34.26545 -32.10448 -31.04145 -28.42993 -28.07519 -27.68190 -27.24364 -24.66928 -23.33926 -22.01021 -21.07662 -19.84603 -19.75308 -18.75266 -17.82566 -17.30784 -17.21358 -16.87792 -16.62945 -16.37968 -16.15532 -15.80818 -15.46751 -15.19346 -14.68965 -14.49721 -14.06380 -13.77313 -13.58176 -13.45795 -13.20428 -13.12756 -13.08721 -12.94521 -12.48117 -12.33231 -12.16719 -12.09309 -12.05144 -11.90081 -11.87087 -11.60595 -11.49144 -10.93555 -10.67030 -9.73785 -9.23012 -8.52494 -6.28663 -0.17782 0.30406 1.33379 1.39307 1.49371 1.82929 2.01574 2.12582 2.30026 2.69272 2.81352 3.06578 3.63158 3.78066 3.85167 3.95681 4.02786 4.11106 4.27890 4.33454 4.39723 4.45157 4.45931 4.51765 4.66303 4.67261 4.78276 4.80745 4.95265 5.00399 5.02254 5.14357 5.19282 5.22192 5.31061 5.36536 5.38739 5.46001 5.85973 6.22439 6.41379 6.70816 6.92677 7.82756 8.68657 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.011116 B = 0.005188 C = 0.003587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2518.258032 B = 5395.630487 C = 7804.483914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.315 6.315 3 C 0.200 3.800 4 C -0.244 4.244 5 C 0.004 3.996 6 C -0.212 4.212 7 C 0.441 3.559 8 O -0.566 6.566 9 O -0.241 6.241 10 C -0.418 4.418 11 H 0.077 0.923 12 C -0.003 4.003 13 N -0.901 5.901 14 Si 1.017 2.983 15 H -0.263 1.263 16 H -0.256 1.256 17 H -0.263 1.263 18 C 0.214 3.786 19 O -0.301 6.301 20 C 0.045 3.955 21 C -0.094 4.094 22 C -0.134 4.134 23 C -0.145 4.145 24 C -0.256 4.256 25 H 0.129 0.871 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.168 0.832 29 H 0.133 0.867 30 H 0.279 0.721 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.026 0.974 40 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.685 -20.004 -0.318 20.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.228 6.228 3 C 0.153 3.847 4 C -0.263 4.263 5 C -0.014 4.014 6 C -0.215 4.215 7 C 0.291 3.709 8 O -0.464 6.464 9 O -0.150 6.150 10 C -0.493 4.493 11 H 0.095 0.905 12 C -0.203 4.203 13 N -0.539 5.539 14 Si 0.836 3.164 15 H -0.188 1.188 16 H -0.180 1.180 17 H -0.188 1.188 18 C 0.165 3.835 19 O -0.213 6.213 20 C -0.029 4.029 21 C -0.113 4.113 22 C -0.192 4.192 23 C -0.203 4.203 24 C -0.275 4.275 25 H 0.147 0.853 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.185 0.815 29 H 0.151 0.849 30 H 0.088 0.912 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.045 0.955 40 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 1.020 -19.880 -0.322 19.908 hybrid contribution 0.108 1.159 0.014 1.164 sum 1.128 -18.721 -0.307 18.757 Atomic orbital electron populations 1.23524 0.75574 1.06233 1.02899 1.86014 1.24170 1.25488 1.87102 1.18913 0.91336 0.84833 0.89645 1.21069 1.01974 0.90403 1.12830 1.20879 0.91468 0.99240 0.89852 1.18662 0.94248 0.88357 1.20191 1.21410 0.85938 0.86226 0.77369 1.90618 1.16100 1.88216 1.51441 1.83926 1.39670 1.13830 1.77545 1.21373 0.92221 0.81168 1.54587 0.90513 1.26501 0.96851 1.02160 0.94826 1.70057 1.07227 1.29635 1.46961 0.84705 0.77680 0.74375 0.79674 1.18758 1.17994 1.18761 1.18701 0.83137 0.91792 0.89830 1.86416 1.14308 1.34371 1.86206 1.23383 0.92361 0.84259 1.02896 1.21144 0.91756 0.99404 0.98990 1.21726 1.00166 0.94255 1.03011 1.21787 1.01475 0.99941 0.97060 1.20383 0.93278 0.96479 1.17397 0.85324 0.91281 0.91279 0.81469 0.84893 0.91180 0.90149 0.90109 0.91955 0.91077 0.90944 0.91330 0.91351 0.91547 0.95465 0.81515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 9.80 113.37 1.11 1.26 16 2 O -0.32 -6.72 10.48 -90.25 -0.95 -7.66 16 3 C 0.20 5.43 6.69 22.62 0.15 5.58 16 4 C -0.24 -7.01 8.96 22.10 0.20 -6.81 16 5 C 0.00 0.16 9.55 22.28 0.21 0.37 16 6 C -0.21 -9.76 5.89 -20.01 -0.12 -9.87 16 7 C 0.44 25.55 7.82 70.15 0.55 26.10 16 8 O -0.57 -35.03 14.40 26.60 0.38 -34.65 16 9 O -0.24 -15.31 8.98 10.38 0.09 -15.21 16 10 C -0.42 -26.96 9.65 67.95 0.66 -26.30 16 11 H 0.08 5.06 6.86 -2.91 -0.02 5.04 16 12 C 0.00 -0.20 5.49 84.88 0.47 0.26 16 13 N -0.90 -54.67 13.67 21.63 0.30 -54.37 16 14 Si 1.02 45.33 29.55 68.60 2.03 47.36 16 15 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 16 H -0.26 -10.37 7.11 99.48 0.71 -9.67 16 17 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 18 C 0.21 8.32 6.70 22.85 0.15 8.48 16 19 O -0.30 -11.95 7.74 -68.73 -0.53 -12.48 16 20 C 0.05 1.20 4.12 71.98 0.30 1.50 16 21 C -0.09 -2.32 3.16 -10.79 -0.03 -2.35 16 22 C -0.13 -2.12 9.19 71.98 0.66 -1.46 16 23 C -0.15 -3.91 9.09 71.98 0.65 -3.25 16 24 C -0.26 -7.59 8.97 22.44 0.20 -7.38 16 25 H 0.13 0.91 8.14 -2.38 -0.02 0.89 16 26 H 0.07 0.79 7.65 -2.39 -0.02 0.77 16 27 H 0.07 0.79 7.65 -2.39 -0.02 0.77 16 28 H 0.17 3.51 6.26 -2.91 -0.02 3.49 16 29 H 0.13 5.53 7.60 -2.91 -0.02 5.50 16 30 H 0.28 15.29 8.31 -92.70 -0.77 14.52 16 31 H 0.08 1.79 7.65 -2.39 -0.02 1.78 16 32 H 0.08 1.78 7.68 -2.39 -0.02 1.77 16 33 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 36 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 38 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.03 0.96 7.82 -2.39 -0.02 0.94 16 40 H 0.17 3.86 6.31 -2.91 -0.02 3.84 16 Total: -1.00 -82.39 342.01 7.52 -74.86 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: 1.04 Total: 16.04 kcal Atomic # 6 Polarization: -19.04 SS G_CDS: 5.16 Total: -13.88 kcal Atomic # 7 Polarization: -54.67 SS G_CDS: 0.30 Total: -54.37 kcal Atomic # 8 Polarization: -69.01 SS G_CDS: -1.00 Total: -70.01 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -82.39 7.52 -74.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000789221345.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.968 kcal (2) G-P(sol) polarization free energy of solvation -82.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds