Wall clock time and date at job start Tue Mar 31 2020 06:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50703 * 120.00020 * 2 1 4 4 N 1.46901 * 109.47196 * 124.39744 * 3 2 1 5 5 C 1.46892 * 111.00087 * 75.17177 * 4 3 2 6 6 C 1.50698 * 109.47494 * 195.73342 * 5 4 3 7 7 H 1.08006 * 119.99659 * 4.93309 * 6 5 4 8 8 C 1.37876 * 120.00566 * 184.93185 * 6 5 4 9 9 N 1.31521 * 119.99464 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 120.00100 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47278 * 0.02562 * 10 8 6 12 12 H 1.48510 * 109.46921 * 120.00152 * 10 8 6 13 13 H 1.48498 * 109.47227 * 239.99823 * 10 8 6 14 14 C 1.46900 * 110.99843 * 199.13056 * 4 3 2 15 15 N 1.46505 * 109.47381 * 66.04562 * 14 4 3 16 16 N 1.40170 * 126.35066 * 269.69025 * 15 14 4 17 17 C 1.29424 * 108.13224 * 179.81310 * 16 15 14 18 18 N 1.37322 * 108.83135 * 0.44552 * 17 16 15 19 19 C 1.46497 * 125.82693 * 179.73251 * 18 17 16 20 20 C 1.52999 * 117.49884 * 8.72478 * 19 18 17 21 21 C 1.53002 * 117.50067 * 300.06466 * 19 18 17 22 22 C 1.34814 * 108.34180 * 359.71237 * 18 17 16 23 23 S 1.71202 * 126.29932 * 180.02562 * 22 18 17 24 24 H 1.08006 * 119.99837 * 180.02562 * 1 2 3 25 25 H 1.07999 * 120.00085 * 359.97438 * 1 2 3 26 26 H 1.07999 * 120.00085 * 180.02562 * 2 1 3 27 27 H 1.08998 * 109.46753 * 4.39612 * 3 2 1 28 28 H 1.08994 * 109.47121 * 244.39863 * 3 2 1 29 29 H 1.09006 * 109.47478 * 315.73848 * 5 4 3 30 30 H 1.09003 * 109.46839 * 75.73796 * 5 4 3 31 31 H 0.97000 * 119.99225 * 179.97438 * 9 8 6 32 32 H 1.09001 * 109.46869 * 186.04487 * 14 4 3 33 33 H 1.08992 * 109.47096 * 306.04490 * 14 4 3 34 34 H 1.07999 * 125.58011 * 180.17708 * 17 16 15 35 35 H 1.09002 * 115.55001 * 154.39352 * 19 18 17 36 36 H 1.08996 * 117.49923 * 359.97438 * 20 19 18 37 37 H 1.08995 * 117.50116 * 145.02201 * 20 19 18 38 38 H 1.09002 * 117.49600 * 214.98160 * 21 19 18 39 39 H 1.09003 * 117.49356 * 359.97381 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9860 1.3380 1.1428 5 6 4.1556 0.4832 0.9000 6 6 4.8722 0.2307 2.2014 7 1 4.4533 0.5947 3.1279 8 6 6.0625 -0.4652 2.2094 9 7 6.5722 -0.9090 1.0811 10 14 6.9510 -0.7776 3.8225 11 1 6.1750 -0.1802 4.9388 12 1 7.0831 -2.2408 4.0395 13 1 8.3008 -0.1608 3.7717 14 6 3.3948 2.7151 1.4498 15 7 2.2338 3.4767 1.9171 16 7 1.3509 4.2181 1.1199 17 6 0.4547 4.7429 1.8922 18 7 0.7203 4.3800 3.1897 19 6 -0.0580 4.7738 4.3667 20 6 -1.3862 5.4944 4.1267 21 6 -0.1807 6.2696 4.6644 22 6 1.8192 3.5991 3.1954 23 16 2.5533 2.8924 4.5711 24 1 -0.5400 -0.9354 0.0004 25 1 -0.5400 0.9353 0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3578 2.1320 0.0788 28 1 2.6297 1.3977 -0.9267 29 1 3.8300 -0.4660 0.4743 30 1 4.8310 0.9809 0.2040 31 1 7.4098 -1.3982 1.0867 32 1 4.1581 2.7026 2.2279 33 1 3.7987 3.1829 0.5521 34 1 -0.3649 5.3678 1.5696 35 1 -0.0005 4.0945 5.2172 36 1 -1.6807 5.6758 3.0931 37 1 -2.2023 5.2895 4.8194 38 1 -0.2043 6.5742 5.7108 39 1 0.3180 6.9605 3.9847 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793568292.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:51 Heat of formation + Delta-G solvation = 164.235026 kcal Electronic energy + Delta-G solvation = -21552.727078 eV Core-core repulsion = 18433.168020 eV Total energy + Delta-G solvation = -3119.559057 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.121 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.61887 -38.15692 -37.08577 -33.78693 -33.10668 -32.44147 -31.65223 -27.43995 -26.75225 -24.44822 -23.93690 -23.01200 -22.65871 -21.70922 -20.81034 -19.14517 -18.26677 -16.70088 -16.65336 -16.19843 -15.97695 -15.42501 -15.13109 -14.87513 -14.61772 -14.06488 -13.63432 -13.34234 -12.82938 -12.55491 -12.13439 -12.07507 -12.03592 -11.69966 -11.46463 -11.22655 -11.10131 -10.92004 -10.85442 -10.71897 -10.50990 -10.43747 -10.06123 -9.77570 -9.14838 -9.05617 -8.38505 -7.56006 -7.27152 -7.08123 -5.97667 -3.98138 1.31686 1.50927 1.61949 2.58151 2.61748 2.67293 3.23765 3.41425 3.49073 3.62458 3.95350 4.20553 4.31444 4.36406 4.52989 4.69076 4.84200 4.95332 5.07994 5.32846 5.33562 5.39325 5.46356 5.51159 5.63458 5.72352 5.82949 6.03835 6.06715 6.20372 6.25037 6.50142 6.92278 7.02491 7.18241 7.19776 7.29585 7.80743 7.88609 8.10962 8.45656 9.17732 9.68298 11.12832 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.015620 B = 0.005275 C = 0.004314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.131160 B = 5306.631081 C = 6488.274949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.114 4.114 3 C 0.070 3.930 4 N -0.536 5.536 5 C 0.200 3.800 6 C -0.509 4.509 7 H 0.080 0.920 8 C 0.058 3.942 9 N -0.903 5.903 10 Si 0.894 3.106 11 H -0.265 1.265 12 H -0.286 1.286 13 H -0.286 1.286 14 C 0.316 3.684 15 N -0.362 5.362 16 N -0.279 5.279 17 C 0.233 3.767 18 N -0.478 5.478 19 C 0.077 3.923 20 C -0.173 4.173 21 C -0.173 4.173 22 C 0.475 3.525 23 S -0.559 6.559 24 H 0.093 0.907 25 H 0.085 0.915 26 H 0.113 0.887 27 H 0.068 0.932 28 H 0.040 0.960 29 H 0.039 0.961 30 H 0.001 0.999 31 H 0.260 0.740 32 H 0.141 0.859 33 H 0.066 0.934 34 H 0.232 0.768 35 H 0.160 0.840 36 H 0.102 0.898 37 H 0.117 0.883 38 H 0.115 0.885 39 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.041 14.915 0.281 22.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.133 4.133 3 C -0.058 4.058 4 N -0.262 5.262 5 C 0.076 3.924 6 C -0.547 4.547 7 H 0.098 0.902 8 C -0.143 4.143 9 N -0.543 5.543 10 Si 0.722 3.278 11 H -0.189 1.189 12 H -0.212 1.212 13 H -0.212 1.212 14 C 0.107 3.893 15 N -0.156 5.156 16 N -0.099 5.099 17 C -0.067 4.067 18 N -0.180 5.180 19 C -0.026 4.026 20 C -0.211 4.211 21 C -0.212 4.212 22 C 0.117 3.883 23 S -0.430 6.430 24 H 0.112 0.888 25 H 0.103 0.897 26 H 0.131 0.869 27 H 0.087 0.913 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.018 0.982 31 H 0.069 0.931 32 H 0.158 0.842 33 H 0.083 0.917 34 H 0.248 0.752 35 H 0.177 0.823 36 H 0.120 0.880 37 H 0.135 0.865 38 H 0.133 0.867 39 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -16.222 14.030 0.376 21.451 hybrid contribution 0.198 0.442 -0.090 0.493 sum -16.024 14.473 0.287 21.594 Atomic orbital electron populations 1.23575 0.95777 1.00797 1.04607 1.22933 0.95551 0.98768 0.96023 1.21329 0.95808 0.95713 0.92912 1.62024 1.19857 1.07023 1.37277 1.19802 0.84062 0.91005 0.97567 1.21398 1.04914 1.34627 0.93797 0.90163 1.24951 0.97221 0.95683 0.96457 1.69977 1.20226 1.38352 1.25743 0.86460 0.79294 0.77738 0.84296 1.18921 1.21235 1.21238 1.22439 0.80456 0.85326 1.01046 1.49862 1.24379 1.39094 1.02302 1.77113 1.02373 1.10589 1.19789 1.26241 0.99933 0.99792 0.80774 1.45637 1.23530 1.41383 1.07419 1.22030 0.95055 0.96914 0.88646 1.23482 0.91735 1.02316 1.03571 1.23521 1.00608 0.93185 1.03894 1.23836 0.85423 0.86887 0.92190 1.93486 1.66255 1.61112 1.22191 0.88840 0.89690 0.86945 0.91335 0.94235 0.94341 0.98166 0.93082 0.84200 0.91683 0.75200 0.82283 0.87954 0.86485 0.86663 0.87986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.22 14.32 29.01 0.42 -2.80 16 2 C -0.11 -2.04 9.33 -36.02 -0.34 -2.38 16 3 C 0.07 1.30 5.35 -4.97 -0.03 1.27 16 4 N -0.54 -11.53 4.51 -241.44 -1.09 -12.62 16 5 C 0.20 5.04 4.56 -4.98 -0.02 5.02 16 6 C -0.51 -14.32 8.38 -34.44 -0.29 -14.61 16 7 H 0.08 2.37 7.71 -52.48 -0.40 1.97 16 8 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 9 N -0.90 -26.68 13.29 55.43 0.74 -25.94 16 10 Si 0.89 22.59 29.54 -169.99 -5.02 17.57 16 11 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 13 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 14 C 0.32 6.24 5.78 -63.31 -0.37 5.87 16 15 N -0.36 -6.29 3.37 -64.99 -0.22 -6.51 16 16 N -0.28 -3.88 11.11 29.86 0.33 -3.55 16 17 C 0.23 2.34 11.96 -89.14 -1.07 1.28 16 18 N -0.48 -5.90 3.07 -112.10 -0.34 -6.24 16 19 C 0.08 0.70 6.53 -67.93 -0.44 0.26 16 20 C -0.17 -0.84 9.98 -26.69 -0.27 -1.10 16 21 C -0.17 -1.05 10.40 -26.69 -0.28 -1.32 16 22 C 0.47 8.30 7.86 -86.74 -0.68 7.62 16 23 S -0.56 -12.10 29.76 -107.50 -3.20 -15.30 16 24 H 0.09 1.28 8.06 -52.48 -0.42 0.86 16 25 H 0.08 1.22 7.84 -52.49 -0.41 0.81 16 26 H 0.11 2.13 7.24 -52.49 -0.38 1.75 16 27 H 0.07 1.19 5.72 -51.93 -0.30 0.90 16 28 H 0.04 0.73 8.01 -51.93 -0.42 0.31 16 29 H 0.04 1.03 6.81 -51.93 -0.35 0.67 16 30 H 0.00 0.01 8.06 -51.93 -0.42 -0.40 16 31 H 0.26 7.30 8.31 -40.82 -0.34 6.97 16 32 H 0.14 3.11 6.74 -51.93 -0.35 2.76 16 33 H 0.07 1.19 8.12 -51.93 -0.42 0.77 16 34 H 0.23 0.99 7.01 -52.49 -0.37 0.63 16 35 H 0.16 1.66 7.88 -51.93 -0.41 1.25 16 36 H 0.10 0.34 6.80 -51.93 -0.35 -0.02 16 37 H 0.12 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.12 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 344.60 15.07 5.19 5.19 Total: -1.00 -34.61 344.60 -12.48 -47.08 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: -5.41 Total: -0.34 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: -3.46 Total: 0.66 kcal Atomic # 7 Polarization: -54.28 SS G_CDS: -0.59 Total: -54.87 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.57 kcal Atomic # 16 Polarization: -12.10 SS G_CDS: -3.20 Total: -15.30 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -34.61 -12.48 -47.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793568292.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 211.319 kcal (2) G-P(sol) polarization free energy of solvation -34.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 176.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 164.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds