Wall clock time and date at job start Tue Mar 31 2020 06:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50703 * 120.00020 * 2 1 4 4 N 1.46901 * 109.47196 * 124.39744 * 3 2 1 5 5 C 1.46892 * 111.00087 * 75.17177 * 4 3 2 6 6 C 1.50698 * 109.47494 * 195.73342 * 5 4 3 7 7 H 1.08006 * 119.99659 * 4.93309 * 6 5 4 8 8 C 1.37876 * 120.00566 * 184.93185 * 6 5 4 9 9 N 1.31521 * 119.99464 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 120.00100 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47278 * 0.02562 * 10 8 6 12 12 H 1.48510 * 109.46921 * 120.00152 * 10 8 6 13 13 H 1.48498 * 109.47227 * 239.99823 * 10 8 6 14 14 C 1.46900 * 110.99843 * 199.13056 * 4 3 2 15 15 N 1.46505 * 109.47381 * 66.04562 * 14 4 3 16 16 N 1.40170 * 126.35066 * 269.69025 * 15 14 4 17 17 C 1.29424 * 108.13224 * 179.81310 * 16 15 14 18 18 N 1.37322 * 108.83135 * 0.44552 * 17 16 15 19 19 C 1.46497 * 125.82693 * 179.73251 * 18 17 16 20 20 C 1.52999 * 117.49884 * 8.72478 * 19 18 17 21 21 C 1.53002 * 117.50067 * 300.06466 * 19 18 17 22 22 C 1.34814 * 108.34180 * 359.71237 * 18 17 16 23 23 S 1.71202 * 126.29932 * 180.02562 * 22 18 17 24 24 H 1.08006 * 119.99837 * 180.02562 * 1 2 3 25 25 H 1.07999 * 120.00085 * 359.97438 * 1 2 3 26 26 H 1.07999 * 120.00085 * 180.02562 * 2 1 3 27 27 H 1.08998 * 109.46753 * 4.39612 * 3 2 1 28 28 H 1.08994 * 109.47121 * 244.39863 * 3 2 1 29 29 H 1.09006 * 109.47478 * 315.73848 * 5 4 3 30 30 H 1.09003 * 109.46839 * 75.73796 * 5 4 3 31 31 H 0.97000 * 119.99225 * 179.97438 * 9 8 6 32 32 H 1.09001 * 109.46869 * 186.04487 * 14 4 3 33 33 H 1.08992 * 109.47096 * 306.04490 * 14 4 3 34 34 H 1.07999 * 125.58011 * 180.17708 * 17 16 15 35 35 H 1.09002 * 115.55001 * 154.39352 * 19 18 17 36 36 H 1.08996 * 117.49923 * 359.97438 * 20 19 18 37 37 H 1.08995 * 117.50116 * 145.02201 * 20 19 18 38 38 H 1.09002 * 117.49600 * 214.98160 * 21 19 18 39 39 H 1.09003 * 117.49356 * 359.97381 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9860 1.3380 1.1428 5 6 4.1556 0.4832 0.9000 6 6 4.8722 0.2307 2.2014 7 1 4.4533 0.5947 3.1279 8 6 6.0625 -0.4652 2.2094 9 7 6.5722 -0.9090 1.0811 10 14 6.9510 -0.7776 3.8225 11 1 6.1750 -0.1802 4.9388 12 1 7.0831 -2.2408 4.0395 13 1 8.3008 -0.1608 3.7717 14 6 3.3948 2.7151 1.4498 15 7 2.2338 3.4767 1.9171 16 7 1.3509 4.2181 1.1199 17 6 0.4547 4.7429 1.8922 18 7 0.7203 4.3800 3.1897 19 6 -0.0580 4.7738 4.3667 20 6 -1.3862 5.4944 4.1267 21 6 -0.1807 6.2696 4.6644 22 6 1.8192 3.5991 3.1954 23 16 2.5533 2.8924 4.5711 24 1 -0.5400 -0.9354 0.0004 25 1 -0.5400 0.9353 0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3578 2.1320 0.0788 28 1 2.6297 1.3977 -0.9267 29 1 3.8300 -0.4660 0.4743 30 1 4.8310 0.9809 0.2040 31 1 7.4098 -1.3982 1.0867 32 1 4.1581 2.7026 2.2279 33 1 3.7987 3.1829 0.5521 34 1 -0.3649 5.3678 1.5696 35 1 -0.0005 4.0945 5.2172 36 1 -1.6807 5.6758 3.0931 37 1 -2.2023 5.2895 4.8194 38 1 -0.2043 6.5742 5.7108 39 1 0.3180 6.9605 3.9847 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000793568292.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:50 Heat of formation + Delta-G solvation = 143.790114 kcal Electronic energy + Delta-G solvation = -21553.613635 eV Core-core repulsion = 18433.168020 eV Total energy + Delta-G solvation = -3120.445615 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.121 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.79880 -39.31805 -38.27486 -35.09854 -34.94171 -33.71857 -33.16794 -29.39941 -28.18530 -25.88295 -25.11581 -24.32595 -23.35063 -23.02391 -22.13748 -20.57602 -19.30051 -18.63642 -17.84889 -17.49683 -17.34503 -16.71167 -16.54319 -16.32185 -15.84800 -15.51971 -15.09237 -14.53966 -14.14389 -13.93308 -13.85295 -13.50110 -13.15375 -12.97708 -12.83793 -12.65547 -12.46413 -12.42625 -12.41408 -12.15360 -12.12878 -11.71002 -11.61977 -11.28782 -10.84737 -10.62184 -10.38049 -9.27892 -8.87755 -8.73148 -8.20076 -6.26386 -0.05277 0.20757 0.70424 1.17330 1.33737 1.37611 1.39895 1.55415 1.57738 2.43072 2.68117 3.08793 3.13327 3.18170 3.37985 3.68464 3.78799 3.89356 3.91734 3.96459 4.20810 4.26540 4.36412 4.47648 4.60574 4.72049 4.81057 4.90794 4.92672 5.02172 5.09505 5.13910 5.15301 5.48936 5.68157 5.72664 5.80739 5.99638 6.04823 6.13546 6.44423 6.91918 7.43277 8.90309 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.015620 B = 0.005275 C = 0.004314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.131160 B = 5306.631081 C = 6488.274949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.154 4.154 3 C 0.078 3.922 4 N -0.547 5.547 5 C 0.220 3.780 6 C -0.517 4.517 7 H 0.059 0.941 8 C 0.015 3.985 9 N -0.929 5.929 10 Si 0.953 3.047 11 H -0.279 1.279 12 H -0.276 1.276 13 H -0.274 1.274 14 C 0.326 3.674 15 N -0.366 5.366 16 N -0.301 5.301 17 C 0.266 3.734 18 N -0.459 5.459 19 C 0.025 3.975 20 C -0.131 4.131 21 C -0.162 4.162 22 C 0.482 3.518 23 S -0.671 6.671 24 H 0.113 0.887 25 H 0.104 0.896 26 H 0.091 0.909 27 H 0.085 0.915 28 H 0.037 0.963 29 H 0.020 0.980 30 H -0.017 1.017 31 H 0.264 0.736 32 H 0.106 0.894 33 H 0.080 0.920 34 H 0.301 0.699 35 H 0.134 0.866 36 H 0.133 0.867 37 H 0.135 0.865 38 H 0.122 0.878 39 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.576 17.352 -0.654 26.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.173 4.173 3 C -0.049 4.049 4 N -0.273 5.273 5 C 0.095 3.905 6 C -0.555 4.555 7 H 0.077 0.923 8 C -0.183 4.183 9 N -0.570 5.570 10 Si 0.779 3.221 11 H -0.204 1.204 12 H -0.202 1.202 13 H -0.200 1.200 14 C 0.116 3.884 15 N -0.157 5.157 16 N -0.120 5.120 17 C -0.032 4.032 18 N -0.157 5.157 19 C -0.077 4.077 20 C -0.168 4.168 21 C -0.200 4.200 22 C 0.117 3.883 23 S -0.545 6.545 24 H 0.131 0.869 25 H 0.122 0.878 26 H 0.109 0.891 27 H 0.103 0.897 28 H 0.055 0.945 29 H 0.038 0.962 30 H 0.001 0.999 31 H 0.073 0.927 32 H 0.124 0.876 33 H 0.097 0.903 34 H 0.315 0.685 35 H 0.152 0.848 36 H 0.151 0.849 37 H 0.153 0.847 38 H 0.140 0.860 39 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -19.814 16.513 -0.568 25.800 hybrid contribution 1.028 -0.131 0.133 1.045 sum -18.787 16.382 -0.435 24.930 Atomic orbital electron populations 1.23838 0.94641 1.02606 1.00118 1.22817 0.96651 0.97616 1.00202 1.21321 0.95283 0.96798 0.91483 1.61842 1.18717 1.07638 1.39105 1.19340 0.84833 0.90793 0.95564 1.21508 1.05411 1.34435 0.94148 0.92254 1.25613 0.97906 0.95531 0.99250 1.70049 1.20753 1.38987 1.27215 0.85570 0.78351 0.77880 0.80313 1.20385 1.20199 1.19985 1.22001 0.81041 0.85034 1.00320 1.49548 1.24499 1.38921 1.02747 1.77194 1.03138 1.11926 1.19767 1.27617 0.99389 0.97480 0.78736 1.45835 1.21342 1.38978 1.09505 1.22372 0.98866 0.98817 0.87638 1.23745 0.90013 0.97420 1.05665 1.23638 1.01056 0.90457 1.04879 1.23172 0.86727 0.87624 0.90746 1.93612 1.69676 1.65873 1.25326 0.86901 0.87769 0.89116 0.89651 0.94472 0.96190 0.99932 0.92685 0.87606 0.90271 0.68455 0.84828 0.84877 0.84737 0.85990 0.87235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.90 14.32 67.78 0.97 -3.93 16 2 C -0.15 -5.48 9.33 25.65 0.24 -5.24 16 3 C 0.08 2.90 5.35 85.56 0.46 3.35 16 4 N -0.55 -24.44 4.51 -917.77 -4.14 -28.59 16 5 C 0.22 11.72 4.56 85.56 0.39 12.11 16 6 C -0.52 -30.62 8.38 25.60 0.21 -30.40 16 7 H 0.06 3.74 7.71 -2.91 -0.02 3.72 16 8 C 0.02 0.91 5.46 84.65 0.46 1.37 16 9 N -0.93 -56.35 13.29 21.45 0.28 -56.07 16 10 Si 0.95 48.08 29.54 68.60 2.03 50.11 16 11 H -0.28 -14.61 7.11 99.48 0.71 -13.91 16 12 H -0.28 -13.44 7.11 99.48 0.71 -12.74 16 13 H -0.27 -13.25 7.11 99.48 0.71 -12.54 16 14 C 0.33 13.37 5.78 170.80 0.99 14.36 16 15 N -0.37 -12.61 3.37 -359.54 -1.21 -13.83 16 16 N -0.30 -7.42 11.11 -59.43 -0.66 -8.08 16 17 C 0.27 4.04 11.96 179.83 2.15 6.19 16 18 N -0.46 -10.22 3.07 -508.57 -1.56 -11.78 16 19 C 0.03 0.40 6.53 44.99 0.29 0.69 16 20 C -0.13 -0.54 9.98 30.62 0.31 -0.23 16 21 C -0.16 -1.33 10.40 30.62 0.32 -1.01 16 22 C 0.48 16.99 7.86 178.99 1.41 18.39 16 23 S -0.67 -31.19 29.76 -56.49 -1.68 -32.87 16 24 H 0.11 2.74 8.06 -2.91 -0.02 2.72 16 25 H 0.10 2.54 7.84 -2.91 -0.02 2.52 16 26 H 0.09 3.59 7.24 -2.91 -0.02 3.57 16 27 H 0.09 2.82 5.72 -2.39 -0.01 2.81 16 28 H 0.04 1.38 8.01 -2.39 -0.02 1.36 16 29 H 0.02 1.13 6.81 -2.38 -0.02 1.12 16 30 H -0.02 -0.95 8.06 -2.39 -0.02 -0.97 16 31 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 32 H 0.11 5.07 6.74 -2.39 -0.02 5.06 16 33 H 0.08 2.97 8.12 -2.39 -0.02 2.95 16 34 H 0.30 0.04 7.01 -2.91 -0.02 0.02 16 35 H 0.13 2.85 7.88 -2.39 -0.02 2.83 16 36 H 0.13 -0.22 6.80 -2.39 -0.02 -0.24 16 37 H 0.13 0.20 8.14 -2.39 -0.02 0.18 16 38 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -83.32 344.60 2.29 -81.03 By element: Atomic # 1 Polarization: 3.37 SS G_CDS: 1.04 Total: 4.41 kcal Atomic # 6 Polarization: 7.46 SS G_CDS: 8.20 Total: 15.65 kcal Atomic # 7 Polarization: -111.04 SS G_CDS: -7.29 Total: -118.33 kcal Atomic # 14 Polarization: 48.08 SS G_CDS: 2.03 Total: 50.11 kcal Atomic # 16 Polarization: -31.19 SS G_CDS: -1.68 Total: -32.87 kcal Total: -83.32 2.29 -81.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793568292.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 224.822 kcal (2) G-P(sol) polarization free energy of solvation -83.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 143.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds