Wall clock time and date at job start Tue Mar 31 2020 07:30:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47346 * 2 1 4 4 O 1.42897 * 109.47392 * 119.99808 * 2 1 3 5 5 C 1.53002 * 109.47183 * 240.00048 * 2 1 3 6 6 C 1.53001 * 109.46989 * 174.99826 * 5 2 1 7 7 C 1.53003 * 109.46992 * 179.97438 * 6 5 2 8 8 O 1.45192 * 109.47228 * 179.97438 * 7 6 5 9 9 C 1.34763 * 117.00120 * 180.02562 * 8 7 6 10 10 O 1.21513 * 119.99703 * 0.02562 * 9 8 7 11 11 C 1.47398 * 120.00213 * 180.02562 * 9 8 7 12 12 C 1.39729 * 120.20005 * 0.02562 * 11 9 8 13 13 C 1.37805 * 119.91280 * 179.97438 * 12 11 9 14 14 C 1.38589 * 120.33014 * 359.97438 * 13 12 11 15 15 C 1.38028 * 120.41668 * 0.02562 * 14 13 12 16 16 C 1.38833 * 120.07612 * 359.97438 * 15 14 13 17 17 O 1.35504 * 120.16572 * 179.97438 * 16 15 14 18 18 C 1.34807 * 117.00123 * 354.40690 * 17 16 15 19 19 H 1.08001 * 120.00157 * 5.05444 * 18 17 16 20 20 C 1.38706 * 120.00172 * 185.06307 * 18 17 16 21 21 N 1.31517 * 119.99697 * 359.97438 * 20 18 17 22 22 Si 1.86791 * 120.00113 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47345 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47095 * 119.99762 * 22 20 18 25 25 H 1.48504 * 109.47535 * 239.99738 * 22 20 18 26 26 H 1.08995 * 109.47543 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47139 * 300.00337 * 1 2 3 28 28 H 1.09005 * 109.46980 * 59.99599 * 1 2 3 29 29 H 0.96704 * 113.99394 * 59.99933 * 4 2 1 30 30 H 1.09005 * 109.47089 * 55.00051 * 5 2 1 31 31 H 1.08994 * 109.46869 * 295.00152 * 5 2 1 32 32 H 1.09000 * 109.47089 * 60.00661 * 6 5 2 33 33 H 1.08994 * 109.47581 * 299.99890 * 6 5 2 34 34 H 1.09005 * 109.46764 * 60.00423 * 7 6 5 35 35 H 1.08999 * 109.47621 * 300.00710 * 7 6 5 36 36 H 1.07997 * 120.04799 * 0.25226 * 12 11 9 37 37 H 1.07992 * 119.83664 * 179.97438 * 13 12 11 38 38 H 1.08001 * 119.79318 * 180.02562 * 14 13 12 39 39 H 1.07995 * 119.96526 * 179.97438 * 15 14 13 40 40 H 0.97004 * 119.99795 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.0400 -0.7212 -1.2493 6 6 3.5648 -0.6132 -1.3137 7 6 4.0749 -1.3350 -2.5626 8 8 5.5218 -1.2320 -2.6241 9 6 6.1330 -1.8191 -3.6719 10 8 5.4746 -2.4007 -4.5114 11 6 7.6001 -1.7557 -3.7997 12 6 8.3613 -1.0884 -2.8365 13 6 9.7325 -1.0332 -2.9614 14 6 10.3620 -1.6371 -4.0384 15 6 9.6234 -2.2998 -4.9977 16 6 8.2409 -2.3660 -4.8887 17 8 7.5140 -3.0157 -5.8298 18 6 8.1802 -3.4771 -6.9071 19 1 9.2560 -3.3944 -6.9530 20 6 7.4839 -4.0578 -7.9568 21 7 6.1738 -4.1588 -7.9008 22 14 8.4069 -4.6965 -9.4499 23 1 9.8626 -4.4658 -9.2680 24 1 8.1523 -6.1514 -9.6042 25 1 7.9397 -3.9807 -10.6643 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.7210 -1.5952 1.2328 30 1 1.6053 -0.2617 -2.1370 31 1 1.7516 -1.7714 -1.2056 32 1 3.9994 -1.0728 -0.4260 33 1 3.8532 0.4370 -1.3574 34 1 3.6403 -0.8758 -3.4506 35 1 3.7865 -2.3852 -2.5186 36 1 7.8761 -0.6203 -1.9928 37 1 10.3196 -0.5168 -2.2165 38 1 11.4372 -1.5888 -4.1275 39 1 10.1214 -2.7675 -5.8342 40 1 5.6868 -4.5646 -8.6350 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000795463727.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:30:32 Heat of formation + Delta-G solvation = -152.925090 kcal Electronic energy + Delta-G solvation = -22907.826548 eV Core-core repulsion = 19267.176023 eV Total energy + Delta-G solvation = -3640.650525 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.81650 -38.71954 -38.15733 -36.42640 -35.68979 -33.60218 -32.41764 -31.04524 -30.43089 -28.97499 -26.55986 -25.45242 -23.49496 -22.07674 -21.52698 -21.34137 -20.14632 -18.07699 -17.49251 -16.76605 -16.53078 -16.27201 -15.69302 -15.68649 -14.71147 -14.47519 -14.39135 -14.14584 -13.90966 -13.57569 -13.54272 -13.33773 -12.71304 -12.48906 -12.40611 -12.10097 -11.85008 -11.77038 -11.39857 -11.37272 -11.11034 -10.99760 -10.94416 -10.91278 -10.76754 -10.48124 -10.25065 -9.98141 -9.73774 -9.23432 -8.94527 -8.32678 -7.38509 -6.52062 -4.11792 1.60608 2.30308 3.08101 3.09020 3.14829 3.25955 3.47357 3.87959 4.12086 4.50239 4.55170 4.71161 4.80769 5.00393 5.02646 5.13094 5.20817 5.26270 5.37443 5.49206 5.50683 5.57034 5.65110 5.68309 5.76851 5.80392 5.85780 6.04839 6.12453 6.13146 6.23631 6.57371 6.65153 6.89485 7.01325 7.11901 7.22778 7.30934 7.40053 7.65468 7.86672 8.74380 8.88386 9.57861 10.61830 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.017386 B = 0.003361 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.104199 B = 8328.116764 C = 9831.746567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.102 3.898 3 H 0.099 0.901 4 O -0.563 6.563 5 C -0.150 4.150 6 C -0.114 4.114 7 C 0.069 3.931 8 O -0.367 6.367 9 C 0.497 3.503 10 O -0.478 6.478 11 C -0.216 4.216 12 C -0.016 4.016 13 C -0.234 4.234 14 C -0.044 4.044 15 C -0.239 4.239 16 C 0.191 3.809 17 O -0.126 6.126 18 C -0.403 4.403 19 H 0.097 0.903 20 C 0.044 3.956 21 N -0.832 5.832 22 Si 0.943 3.057 23 H -0.265 1.265 24 H -0.274 1.274 25 H -0.274 1.274 26 H 0.058 0.942 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.374 0.626 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.125 0.875 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.134 0.866 40 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.688 6.477 11.966 14.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.044 3.956 3 H 0.117 0.883 4 O -0.369 6.369 5 C -0.188 4.188 6 C -0.151 4.151 7 C -0.006 4.006 8 O -0.286 6.286 9 C 0.342 3.658 10 O -0.365 6.365 11 C -0.219 4.219 12 C -0.034 4.034 13 C -0.253 4.253 14 C -0.062 4.062 15 C -0.258 4.258 16 C 0.132 3.868 17 O -0.024 6.024 18 C -0.478 4.478 19 H 0.114 0.886 20 C -0.164 4.164 21 N -0.464 5.464 22 Si 0.767 3.233 23 H -0.189 1.189 24 H -0.200 1.200 25 H -0.199 1.199 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.221 0.779 30 H 0.094 0.906 31 H 0.088 0.912 32 H 0.097 0.903 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.143 0.857 37 H 0.130 0.870 38 H 0.130 0.870 39 H 0.152 0.848 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.137 6.703 11.613 14.359 hybrid contribution 0.079 -0.911 -1.044 1.388 sum -5.058 5.792 10.569 13.070 Atomic orbital electron populations 1.22513 0.96486 1.02614 1.02757 1.21914 0.92612 0.96849 0.84265 0.88277 1.86594 1.77250 1.29090 1.43948 1.22247 0.95739 1.01734 0.99101 1.21467 0.94507 1.01582 0.97563 1.22868 0.78142 1.00979 0.98564 1.86494 1.22340 1.72273 1.47525 1.21097 0.89041 0.76653 0.78969 1.90995 1.66025 1.39495 1.39946 1.18047 0.88612 1.14209 1.00998 1.20971 0.93571 0.93308 0.95545 1.20546 0.94220 1.09194 1.01383 1.20970 0.98755 0.93693 0.92815 1.21112 0.93130 1.08456 1.03136 1.19241 0.90109 0.88721 0.88773 1.84143 1.34830 1.57504 1.25931 1.21583 0.92493 1.39447 0.94301 0.88589 1.25422 0.95803 0.96595 0.98557 1.70132 1.06180 1.38287 1.31772 0.85623 0.79200 0.78677 0.79776 1.18879 1.19957 1.19945 0.92268 0.91853 0.91470 0.77861 0.90584 0.91200 0.90305 0.90971 0.91773 0.91783 0.85734 0.86961 0.86954 0.84824 0.91801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.24 9.53 37.16 0.35 -0.89 16 2 C 0.10 0.84 3.59 -26.73 -0.10 0.75 16 3 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 4 O -0.56 -5.24 12.88 -35.23 -0.45 -5.70 16 5 C -0.15 -1.36 4.89 -26.73 -0.13 -1.49 16 6 C -0.11 -1.32 5.49 -26.73 -0.15 -1.47 16 7 C 0.07 1.08 5.48 37.16 0.20 1.28 16 8 O -0.37 -7.00 9.47 -40.66 -0.39 -7.39 16 9 C 0.50 11.58 7.89 34.46 0.27 11.86 16 10 O -0.48 -13.13 14.96 -26.59 -0.40 -13.53 16 11 C -0.22 -4.90 5.89 -104.83 -0.62 -5.52 16 12 C -0.02 -0.29 9.61 -39.18 -0.38 -0.67 16 13 C -0.23 -3.97 10.02 -39.61 -0.40 -4.36 16 14 C -0.04 -0.77 10.03 -39.53 -0.40 -1.17 16 15 C -0.24 -5.12 9.16 -39.44 -0.36 -5.48 16 16 C 0.19 4.77 6.66 -38.58 -0.26 4.52 16 17 O -0.13 -3.70 7.84 -20.99 -0.16 -3.86 16 18 C -0.40 -11.27 9.49 30.91 0.29 -10.98 16 19 H 0.10 2.43 5.21 -52.49 -0.27 2.16 16 20 C 0.04 1.21 5.49 -17.51 -0.10 1.12 16 21 N -0.83 -24.77 13.67 55.48 0.76 -24.01 16 22 Si 0.94 20.24 29.55 -169.99 -5.02 15.21 16 23 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 24 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 25 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 26 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.37 2.24 9.05 45.56 0.41 2.66 16 30 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.08 0.94 7.82 -51.93 -0.41 0.54 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.12 2.00 7.61 -52.49 -0.40 1.60 16 37 H 0.11 1.54 8.06 -52.49 -0.42 1.11 16 38 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 39 H 0.13 2.79 5.64 -52.49 -0.30 2.49 16 40 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 345.92 15.07 5.21 5.21 Total: -1.00 -34.25 345.92 -6.95 -41.21 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -4.75 Total: 5.37 kcal Atomic # 6 Polarization: -10.75 SS G_CDS: -1.75 Total: -12.50 kcal Atomic # 7 Polarization: -24.77 SS G_CDS: 0.76 Total: -24.01 kcal Atomic # 8 Polarization: -29.08 SS G_CDS: -1.40 Total: -30.48 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -34.25 -6.95 -41.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795463727.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.719 kcal (2) G-P(sol) polarization free energy of solvation -34.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds