Wall clock time and date at job start Tue Mar 31 2020 07:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47346 * 2 1 4 4 O 1.42897 * 109.47392 * 119.99808 * 2 1 3 5 5 C 1.53002 * 109.47183 * 240.00048 * 2 1 3 6 6 C 1.53001 * 109.46989 * 174.99826 * 5 2 1 7 7 C 1.53003 * 109.46992 * 179.97438 * 6 5 2 8 8 O 1.45192 * 109.47228 * 179.97438 * 7 6 5 9 9 C 1.34763 * 117.00120 * 180.02562 * 8 7 6 10 10 O 1.21513 * 119.99703 * 0.02562 * 9 8 7 11 11 C 1.47398 * 120.00213 * 180.02562 * 9 8 7 12 12 C 1.39729 * 120.20005 * 0.02562 * 11 9 8 13 13 C 1.37805 * 119.91280 * 179.97438 * 12 11 9 14 14 C 1.38589 * 120.33014 * 359.97438 * 13 12 11 15 15 C 1.38028 * 120.41668 * 0.02562 * 14 13 12 16 16 C 1.38833 * 120.07612 * 359.97438 * 15 14 13 17 17 O 1.35504 * 120.16572 * 179.97438 * 16 15 14 18 18 C 1.34807 * 117.00123 * 354.40690 * 17 16 15 19 19 H 1.08001 * 120.00157 * 5.05444 * 18 17 16 20 20 C 1.38706 * 120.00172 * 185.06307 * 18 17 16 21 21 N 1.31517 * 119.99697 * 359.97438 * 20 18 17 22 22 Si 1.86791 * 120.00113 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47345 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47095 * 119.99762 * 22 20 18 25 25 H 1.48504 * 109.47535 * 239.99738 * 22 20 18 26 26 H 1.08995 * 109.47543 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47139 * 300.00337 * 1 2 3 28 28 H 1.09005 * 109.46980 * 59.99599 * 1 2 3 29 29 H 0.96704 * 113.99394 * 59.99933 * 4 2 1 30 30 H 1.09005 * 109.47089 * 55.00051 * 5 2 1 31 31 H 1.08994 * 109.46869 * 295.00152 * 5 2 1 32 32 H 1.09000 * 109.47089 * 60.00661 * 6 5 2 33 33 H 1.08994 * 109.47581 * 299.99890 * 6 5 2 34 34 H 1.09005 * 109.46764 * 60.00423 * 7 6 5 35 35 H 1.08999 * 109.47621 * 300.00710 * 7 6 5 36 36 H 1.07997 * 120.04799 * 0.25226 * 12 11 9 37 37 H 1.07992 * 119.83664 * 179.97438 * 13 12 11 38 38 H 1.08001 * 119.79318 * 180.02562 * 14 13 12 39 39 H 1.07995 * 119.96526 * 179.97438 * 15 14 13 40 40 H 0.97004 * 119.99795 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.0400 -0.7212 -1.2493 6 6 3.5648 -0.6132 -1.3137 7 6 4.0749 -1.3350 -2.5626 8 8 5.5218 -1.2320 -2.6241 9 6 6.1330 -1.8191 -3.6719 10 8 5.4746 -2.4007 -4.5114 11 6 7.6001 -1.7557 -3.7997 12 6 8.3613 -1.0884 -2.8365 13 6 9.7325 -1.0332 -2.9614 14 6 10.3620 -1.6371 -4.0384 15 6 9.6234 -2.2998 -4.9977 16 6 8.2409 -2.3660 -4.8887 17 8 7.5140 -3.0157 -5.8298 18 6 8.1802 -3.4771 -6.9071 19 1 9.2560 -3.3944 -6.9530 20 6 7.4839 -4.0578 -7.9568 21 7 6.1738 -4.1588 -7.9008 22 14 8.4069 -4.6965 -9.4499 23 1 9.8626 -4.4658 -9.2680 24 1 8.1523 -6.1514 -9.6042 25 1 7.9397 -3.9807 -10.6643 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.7210 -1.5952 1.2328 30 1 1.6053 -0.2617 -2.1370 31 1 1.7516 -1.7714 -1.2056 32 1 3.9994 -1.0728 -0.4260 33 1 3.8532 0.4370 -1.3574 34 1 3.6403 -0.8758 -3.4506 35 1 3.7865 -2.3852 -2.5186 36 1 7.8761 -0.6203 -1.9928 37 1 10.3196 -0.5168 -2.2165 38 1 11.4372 -1.5888 -4.1275 39 1 10.1214 -2.7675 -5.8342 40 1 5.6868 -4.5646 -8.6350 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000795463727.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:30:31 Heat of formation + Delta-G solvation = -176.257601 kcal Electronic energy + Delta-G solvation = -22908.838322 eV Core-core repulsion = 19267.176023 eV Total energy + Delta-G solvation = -3641.662299 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.56386 -40.41474 -38.95032 -38.14320 -37.38184 -34.60964 -34.37915 -32.38672 -31.47515 -30.64749 -27.73258 -27.29389 -25.01832 -23.40258 -22.81166 -22.29299 -21.77159 -19.92222 -19.22888 -18.36223 -17.70474 -17.48379 -17.08903 -16.73834 -16.36955 -16.14183 -15.72091 -15.62083 -15.31985 -15.10137 -14.89958 -14.43406 -14.07728 -13.97401 -13.62478 -13.57940 -13.05110 -12.89692 -12.73365 -12.63919 -12.58213 -12.48405 -12.31739 -12.09705 -12.03173 -11.64347 -11.61309 -11.44689 -11.12234 -10.88074 -10.86241 -9.93472 -9.12971 -8.49532 -6.20664 -0.05684 0.67925 1.32958 1.43284 1.52909 1.71478 1.72643 2.13480 2.81114 3.13829 3.35798 3.46603 3.68318 3.85959 3.91794 4.03887 4.10347 4.20364 4.24352 4.31403 4.36120 4.50639 4.53546 4.54782 4.68211 4.78641 4.92078 4.94730 4.98618 5.04520 5.11730 5.20512 5.25112 5.33324 5.44275 5.46720 5.60193 5.65628 5.92473 6.11616 6.87556 6.89171 6.97566 7.70650 8.70968 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.017386 B = 0.003361 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.104199 B = 8328.116764 C = 9831.746567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.106 3.894 3 H 0.099 0.901 4 O -0.581 6.581 5 C -0.146 4.146 6 C -0.100 4.100 7 C 0.062 3.938 8 O -0.355 6.355 9 C 0.497 3.503 10 O -0.532 6.532 11 C -0.238 4.238 12 C -0.013 4.013 13 C -0.204 4.204 14 C -0.027 4.027 15 C -0.256 4.256 16 C 0.157 3.843 17 O -0.188 6.188 18 C -0.427 4.427 19 H 0.112 0.888 20 C -0.021 4.021 21 N -0.904 5.904 22 Si 1.025 2.975 23 H -0.243 1.243 24 H -0.269 1.269 25 H -0.269 1.269 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.072 0.928 29 H 0.387 0.613 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.156 0.844 37 H 0.166 0.834 38 H 0.161 0.839 39 H 0.132 0.868 40 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.222 8.155 14.162 16.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.047 3.953 3 H 0.116 0.884 4 O -0.389 6.389 5 C -0.184 4.184 6 C -0.138 4.138 7 C -0.012 4.012 8 O -0.273 6.273 9 C 0.344 3.656 10 O -0.423 6.423 11 C -0.241 4.241 12 C -0.031 4.031 13 C -0.222 4.222 14 C -0.045 4.045 15 C -0.275 4.275 16 C 0.101 3.899 17 O -0.091 6.091 18 C -0.503 4.503 19 H 0.129 0.871 20 C -0.221 4.221 21 N -0.539 5.539 22 Si 0.843 3.157 23 H -0.166 1.166 24 H -0.194 1.194 25 H -0.194 1.194 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.091 0.909 29 H 0.236 0.764 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.173 0.827 37 H 0.184 0.816 38 H 0.179 0.821 39 H 0.149 0.851 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.631 8.422 13.891 16.456 hybrid contribution -0.564 -1.200 -1.317 1.869 sum -3.195 7.222 12.573 14.848 Atomic orbital electron populations 1.22462 0.95157 1.03183 1.03136 1.21888 0.93581 0.96492 0.83289 0.88354 1.86557 1.77695 1.30324 1.44276 1.22249 0.93641 1.02443 1.00060 1.21442 0.96184 1.01169 0.94955 1.23230 0.76188 1.01247 1.00541 1.86476 1.24290 1.71043 1.45492 1.21449 0.89669 0.75634 0.78817 1.90979 1.67273 1.41964 1.42086 1.18503 0.88790 1.15061 1.01760 1.21393 0.94518 0.92099 0.95043 1.21227 0.93602 1.06225 1.01118 1.21541 1.01011 0.90830 0.91079 1.21298 0.91860 1.09689 1.04641 1.19986 0.91950 0.89124 0.88806 1.84146 1.36532 1.60794 1.27581 1.22144 0.93392 1.39937 0.94819 0.87067 1.26806 0.96697 0.96614 1.01936 1.70312 1.08566 1.41646 1.33405 0.84466 0.78556 0.77880 0.74824 1.16633 1.19370 1.19401 0.91651 0.91662 0.90891 0.76356 0.90089 0.90706 0.90234 0.90287 0.92586 0.92602 0.82689 0.81634 0.82097 0.85077 0.91847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.11 9.53 71.98 0.69 -1.42 16 2 C 0.11 1.57 3.59 30.59 0.11 1.68 16 3 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 4 O -0.58 -9.85 12.88 -148.98 -1.92 -11.77 16 5 C -0.15 -2.47 4.89 30.60 0.15 -2.32 16 6 C -0.10 -2.23 5.49 30.60 0.17 -2.06 16 7 C 0.06 1.99 5.48 71.98 0.39 2.38 16 8 O -0.36 -13.65 9.47 -56.73 -0.54 -14.19 16 9 C 0.50 24.12 7.89 70.23 0.55 24.68 16 10 O -0.53 -31.50 14.96 26.79 0.40 -31.10 16 11 C -0.24 -10.92 5.89 -20.00 -0.12 -11.04 16 12 C -0.01 -0.42 9.61 22.53 0.22 -0.21 16 13 C -0.20 -5.68 10.02 22.25 0.22 -5.46 16 14 C -0.03 -0.82 10.03 22.30 0.22 -0.59 16 15 C -0.26 -10.72 9.16 22.36 0.20 -10.51 16 16 C 0.16 8.08 6.66 22.92 0.15 8.23 16 17 O -0.19 -11.84 7.84 1.09 0.01 -11.83 16 18 C -0.43 -25.32 9.49 67.93 0.64 -24.67 16 19 H 0.11 5.85 5.21 -2.91 -0.02 5.84 16 20 C -0.02 -1.22 5.49 84.85 0.47 -0.75 16 21 N -0.90 -57.95 13.67 21.62 0.30 -57.66 16 22 Si 1.02 43.14 29.55 68.60 2.03 45.17 16 23 H -0.24 -9.20 7.11 99.48 0.71 -8.50 16 24 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 25 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 26 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 28 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 29 H 0.39 4.05 9.05 -74.05 -0.67 3.38 16 30 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 31 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.08 1.79 7.82 -2.39 -0.02 1.77 16 33 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 35 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.16 4.27 7.61 -2.91 -0.02 4.25 16 37 H 0.17 3.08 8.06 -2.91 -0.02 3.05 16 38 H 0.16 3.46 8.06 -2.91 -0.02 3.44 16 39 H 0.13 5.46 5.64 -2.91 -0.02 5.44 16 40 H 0.27 15.91 8.31 -92.71 -0.77 15.14 16 Total: -1.00 -83.33 345.92 4.74 -78.59 By element: Atomic # 1 Polarization: 24.47 SS G_CDS: 0.39 Total: 24.86 kcal Atomic # 6 Polarization: -26.15 SS G_CDS: 4.08 Total: -22.07 kcal Atomic # 7 Polarization: -57.95 SS G_CDS: 0.30 Total: -57.66 kcal Atomic # 8 Polarization: -66.84 SS G_CDS: -2.05 Total: -68.89 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -83.33 4.74 -78.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795463727.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.670 kcal (2) G-P(sol) polarization free energy of solvation -83.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds