Wall clock time and date at job start Tue Mar 31 2020 06:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50707 * 109.47310 * 2 1 4 4 C 1.38098 * 119.95195 * 265.25440 * 3 2 1 5 5 C 1.38517 * 120.39952 * 180.30027 * 4 3 2 6 6 C 1.37804 * 120.30723 * 359.69975 * 5 4 3 7 7 C 1.39732 * 119.90681 * 0.02562 * 6 5 4 8 8 C 1.47395 * 120.20177 * 179.97438 * 7 6 5 9 9 O 1.21514 * 120.00329 * 180.02562 * 8 7 6 10 10 O 1.34760 * 119.99909 * 0.02562 * 8 7 6 11 11 C 1.45196 * 116.99676 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.46837 * 180.02562 * 11 10 8 13 13 O 1.42898 * 109.47352 * 65.00121 * 12 11 10 14 14 C 1.42900 * 114.00192 * 180.02562 * 13 12 11 15 15 C 1.50702 * 109.47105 * 179.97438 * 14 13 12 16 16 H 1.07996 * 120.00064 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99699 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00298 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99661 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47600 * 59.99813 * 19 17 15 21 21 H 1.48500 * 109.46903 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47102 * 299.99352 * 19 17 15 23 23 C 1.38665 * 119.95679 * 84.99684 * 3 2 1 24 24 O 1.35641 * 120.15411 * 0.02562 * 23 3 2 25 25 H 1.08996 * 109.47127 * 59.99712 * 1 2 3 26 26 H 1.08996 * 109.47092 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46918 * 300.00074 * 1 2 3 28 28 H 1.08993 * 109.47355 * 239.99704 * 2 1 3 29 29 H 1.09007 * 109.47164 * 119.99777 * 2 1 3 30 30 H 1.07998 * 119.79809 * 0.02562 * 4 3 2 31 31 H 1.07996 * 119.84844 * 179.72280 * 5 4 3 32 32 H 1.08002 * 120.04603 * 180.02562 * 6 5 4 33 33 H 1.09005 * 109.47505 * 300.00324 * 11 10 8 34 34 H 1.09001 * 109.47255 * 60.00540 * 11 10 8 35 35 H 1.09004 * 109.47135 * 185.00384 * 12 11 10 36 36 H 1.08999 * 109.46760 * 304.99666 * 12 11 10 37 37 H 1.08999 * 109.47267 * 300.00215 * 14 13 12 38 38 H 1.09002 * 109.46830 * 59.99863 * 14 13 12 39 39 H 0.96992 * 120.00304 * 179.97438 * 18 17 15 40 40 H 0.96700 * 114.00023 * 269.72217 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3555 2.0379 -1.1924 5 6 2.8240 3.3414 -1.2027 6 6 2.9666 4.0384 -0.0225 7 6 2.6380 3.4285 1.1909 8 6 2.7885 4.1678 2.4571 9 8 2.5021 3.6337 3.5103 10 8 3.2438 5.4361 2.4468 11 6 3.3673 6.1026 3.7308 12 6 3.8945 7.5232 3.5194 13 8 2.9311 8.2851 2.7891 14 6 3.3278 9.6344 2.5361 15 6 2.2433 10.3405 1.7638 16 1 1.3412 9.8118 1.4936 17 6 2.4029 11.6614 1.4022 18 7 3.5013 12.3053 1.7316 19 14 1.0584 12.5368 0.4455 20 1 -0.1973 12.5310 1.2383 21 1 1.4707 13.9389 0.1825 22 1 0.8326 11.8365 -0.8444 23 6 2.1644 2.1086 1.1968 24 8 1.8428 1.5054 2.3684 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 2.2465 1.4994 -2.1222 31 1 3.0783 3.8138 -2.1400 32 1 3.3318 5.0547 -0.0355 33 1 2.3908 6.1458 4.2132 34 1 4.0606 5.5477 4.3630 35 1 4.0715 7.9929 4.4870 36 1 4.8282 7.4844 2.9583 37 1 3.4934 10.1482 3.4831 38 1 4.2496 9.6391 1.9543 39 1 3.6137 13.2344 1.4769 40 1 0.9208 1.6270 2.6334 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815194418.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:22 Heat of formation + Delta-G solvation = -162.236730 kcal Electronic energy + Delta-G solvation = -22856.908685 eV Core-core repulsion = 19215.854376 eV Total energy + Delta-G solvation = -3641.054308 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.77066 -39.45522 -37.05737 -36.83007 -35.84140 -34.41387 -32.77947 -31.05971 -29.83932 -29.33490 -26.94989 -24.66325 -24.16387 -22.45388 -22.05770 -21.68248 -20.60967 -18.43830 -17.63243 -16.92081 -16.48013 -16.35742 -16.04878 -15.69216 -15.26759 -14.74925 -14.63384 -14.47975 -14.27222 -14.00321 -13.59113 -13.17376 -12.97839 -12.69436 -12.50948 -12.28699 -11.97669 -11.91574 -11.73977 -11.42664 -11.24320 -10.93861 -10.89442 -10.82905 -10.75011 -10.35473 -10.18614 -10.03148 -9.17668 -9.14929 -8.88123 -8.83019 -8.22129 -6.12825 -4.14693 0.50638 1.00414 2.55178 2.75983 3.31205 3.33853 3.37747 3.45393 3.96758 4.31497 4.36998 4.55017 4.65783 4.75095 4.85921 5.00071 5.09548 5.14161 5.19277 5.23607 5.25647 5.39859 5.47509 5.58721 5.62385 5.69622 5.87106 5.89052 5.92842 6.02482 6.05617 6.17488 6.19657 6.48986 6.61016 7.04703 7.38908 7.45333 7.76776 7.90148 8.11650 8.51677 8.97662 9.50050 10.98698 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.019144 B = 0.003061 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.268455 B = 9144.412840 C = 9995.814941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.080 4.080 3 C -0.127 4.127 4 C -0.071 4.071 5 C -0.140 4.140 6 C -0.047 4.047 7 C -0.150 4.150 8 C 0.505 3.495 9 O -0.500 6.500 10 O -0.338 6.338 11 C 0.076 3.924 12 C 0.062 3.938 13 O -0.391 6.391 14 C 0.195 3.805 15 C -0.516 4.516 16 H 0.066 0.934 17 C 0.057 3.943 18 N -0.899 5.899 19 Si 0.909 3.091 20 H -0.275 1.275 21 H -0.286 1.286 22 H -0.274 1.274 23 C 0.172 3.828 24 O -0.476 6.476 25 H 0.056 0.944 26 H 0.059 0.941 27 H 0.053 0.947 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.131 0.869 31 H 0.135 0.865 32 H 0.148 0.852 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.063 0.937 36 H 0.050 0.950 37 H 0.006 0.994 38 H 0.007 0.993 39 H 0.265 0.735 40 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.115 -23.376 -4.329 23.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.117 4.117 3 C -0.127 4.127 4 C -0.089 4.089 5 C -0.157 4.157 6 C -0.065 4.065 7 C -0.152 4.152 8 C 0.350 3.650 9 O -0.390 6.390 10 O -0.255 6.255 11 C 0.003 3.997 12 C -0.016 4.016 13 O -0.311 6.311 14 C 0.120 3.880 15 C -0.554 4.554 16 H 0.084 0.916 17 C -0.145 4.145 18 N -0.538 5.538 19 Si 0.736 3.264 20 H -0.200 1.200 21 H -0.211 1.211 22 H -0.200 1.200 23 C 0.126 3.874 24 O -0.287 6.287 25 H 0.075 0.925 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.092 0.908 29 H 0.098 0.902 30 H 0.149 0.851 31 H 0.153 0.847 32 H 0.165 0.835 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.081 0.919 36 H 0.068 0.932 37 H 0.024 0.976 38 H 0.025 0.975 39 H 0.074 0.926 40 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -1.702 -23.557 -4.054 23.964 hybrid contribution -0.755 0.974 -0.184 1.246 sum -2.456 -22.583 -4.237 23.108 Atomic orbital electron populations 1.21730 0.94710 1.01893 1.02092 1.20431 0.96109 0.91767 1.03402 1.20145 1.02978 0.97670 0.91940 1.21210 0.95679 0.94758 0.97262 1.21191 1.01271 0.94715 0.98571 1.21579 0.93878 1.00452 0.90584 1.19634 1.09482 0.93858 0.92194 1.20910 0.74510 0.80567 0.89038 1.90833 1.46568 1.68844 1.32737 1.86639 1.76466 1.25974 1.36375 1.23215 1.02562 0.91708 0.82238 1.22326 0.93307 0.88993 0.96970 1.87916 1.42056 1.26438 1.74672 1.20231 0.96256 0.76174 0.95294 1.21010 1.03609 0.95720 1.35063 0.91566 1.24947 0.96264 0.97019 0.96236 1.69946 1.26114 1.11119 1.46618 0.86384 0.81543 0.78211 0.80269 1.20009 1.21143 1.19968 1.18256 0.95379 0.88213 0.85554 1.84704 1.33601 1.74256 1.36143 0.92478 0.92164 0.92794 0.90828 0.90181 0.85121 0.84710 0.83464 0.90479 0.90382 0.91888 0.93175 0.97617 0.97500 0.92558 0.74795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.89 37.15 0.37 -0.56 16 2 C -0.08 -0.59 5.78 -27.88 -0.16 -0.75 16 3 C -0.13 -1.22 5.14 -104.51 -0.54 -1.76 16 4 C -0.07 -0.61 9.66 -39.53 -0.38 -0.99 16 5 C -0.14 -1.34 10.02 -39.64 -0.40 -1.74 16 6 C -0.05 -0.57 9.61 -39.18 -0.38 -0.95 16 7 C -0.15 -2.08 5.88 -104.86 -0.62 -2.69 16 8 C 0.51 8.28 7.89 34.46 0.27 8.55 16 9 O -0.50 -8.84 14.95 -26.60 -0.40 -9.24 16 10 O -0.34 -5.90 9.44 -43.44 -0.41 -6.31 16 11 C 0.08 1.25 5.85 37.16 0.22 1.47 16 12 C 0.06 1.14 6.33 37.16 0.24 1.37 16 13 O -0.39 -9.50 10.30 -38.80 -0.40 -9.90 16 14 C 0.19 5.32 5.69 36.01 0.20 5.53 16 15 C -0.52 -15.20 9.43 -34.44 -0.32 -15.53 16 16 H 0.07 1.94 7.81 -52.49 -0.41 1.53 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.90 -26.78 13.29 55.43 0.74 -26.05 16 19 Si 0.91 21.77 29.54 -169.99 -5.02 16.75 16 20 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 22 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 23 C 0.17 2.08 6.69 -38.68 -0.26 1.82 16 24 O -0.48 -5.64 10.71 -40.50 -0.43 -6.08 16 25 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.44 8.05 -51.93 -0.42 0.02 16 29 H 0.08 0.64 7.69 -51.93 -0.40 0.24 16 30 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 31 H 0.14 1.00 8.06 -52.49 -0.42 0.57 16 32 H 0.15 1.86 7.61 -52.49 -0.40 1.47 16 33 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 38 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 39 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 40 H 0.39 3.32 9.06 45.56 0.41 3.73 16 LS Contribution 350.81 15.07 5.29 5.29 Total: -1.00 -34.27 350.81 -7.49 -41.76 By element: Atomic # 1 Polarization: 3.48 SS G_CDS: -5.00 Total: -1.52 kcal Atomic # 6 Polarization: -2.85 SS G_CDS: -1.86 Total: -4.70 kcal Atomic # 7 Polarization: -26.78 SS G_CDS: 0.74 Total: -26.05 kcal Atomic # 8 Polarization: -29.89 SS G_CDS: -1.64 Total: -31.53 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.27 -7.49 -41.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815194418.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.474 kcal (2) G-P(sol) polarization free energy of solvation -34.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds