Wall clock time and date at job start Tue Mar 31 2020 06:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50707 * 109.47310 * 2 1 4 4 C 1.38098 * 119.95195 * 265.25440 * 3 2 1 5 5 C 1.38517 * 120.39952 * 180.30027 * 4 3 2 6 6 C 1.37804 * 120.30723 * 359.69975 * 5 4 3 7 7 C 1.39732 * 119.90681 * 0.02562 * 6 5 4 8 8 C 1.47395 * 120.20177 * 179.97438 * 7 6 5 9 9 O 1.21514 * 120.00329 * 180.02562 * 8 7 6 10 10 O 1.34760 * 119.99909 * 0.02562 * 8 7 6 11 11 C 1.45196 * 116.99676 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.46837 * 180.02562 * 11 10 8 13 13 O 1.42898 * 109.47352 * 65.00121 * 12 11 10 14 14 C 1.42900 * 114.00192 * 180.02562 * 13 12 11 15 15 C 1.50702 * 109.47105 * 179.97438 * 14 13 12 16 16 H 1.07996 * 120.00064 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99699 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00298 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99661 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47600 * 59.99813 * 19 17 15 21 21 H 1.48500 * 109.46903 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47102 * 299.99352 * 19 17 15 23 23 C 1.38665 * 119.95679 * 84.99684 * 3 2 1 24 24 O 1.35641 * 120.15411 * 0.02562 * 23 3 2 25 25 H 1.08996 * 109.47127 * 59.99712 * 1 2 3 26 26 H 1.08996 * 109.47092 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46918 * 300.00074 * 1 2 3 28 28 H 1.08993 * 109.47355 * 239.99704 * 2 1 3 29 29 H 1.09007 * 109.47164 * 119.99777 * 2 1 3 30 30 H 1.07998 * 119.79809 * 0.02562 * 4 3 2 31 31 H 1.07996 * 119.84844 * 179.72280 * 5 4 3 32 32 H 1.08002 * 120.04603 * 180.02562 * 6 5 4 33 33 H 1.09005 * 109.47505 * 300.00324 * 11 10 8 34 34 H 1.09001 * 109.47255 * 60.00540 * 11 10 8 35 35 H 1.09004 * 109.47135 * 185.00384 * 12 11 10 36 36 H 1.08999 * 109.46760 * 304.99666 * 12 11 10 37 37 H 1.08999 * 109.47267 * 300.00215 * 14 13 12 38 38 H 1.09002 * 109.46830 * 59.99863 * 14 13 12 39 39 H 0.96992 * 120.00304 * 179.97438 * 18 17 15 40 40 H 0.96700 * 114.00023 * 269.72217 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3555 2.0379 -1.1924 5 6 2.8240 3.3414 -1.2027 6 6 2.9666 4.0384 -0.0225 7 6 2.6380 3.4285 1.1909 8 6 2.7885 4.1678 2.4571 9 8 2.5021 3.6337 3.5103 10 8 3.2438 5.4361 2.4468 11 6 3.3673 6.1026 3.7308 12 6 3.8945 7.5232 3.5194 13 8 2.9311 8.2851 2.7891 14 6 3.3278 9.6344 2.5361 15 6 2.2433 10.3405 1.7638 16 1 1.3412 9.8118 1.4936 17 6 2.4029 11.6614 1.4022 18 7 3.5013 12.3053 1.7316 19 14 1.0584 12.5368 0.4455 20 1 -0.1973 12.5310 1.2383 21 1 1.4707 13.9389 0.1825 22 1 0.8326 11.8365 -0.8444 23 6 2.1644 2.1086 1.1968 24 8 1.8428 1.5054 2.3684 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 2.2465 1.4994 -2.1222 31 1 3.0783 3.8138 -2.1400 32 1 3.3318 5.0547 -0.0355 33 1 2.3908 6.1458 4.2132 34 1 4.0606 5.5477 4.3630 35 1 4.0715 7.9929 4.4870 36 1 4.8282 7.4844 2.9583 37 1 3.4934 10.1482 3.4831 38 1 4.2496 9.6391 1.9543 39 1 3.6137 13.2344 1.4769 40 1 0.9208 1.6270 2.6334 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815194418.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:21 Heat of formation + Delta-G solvation = -183.773928 kcal Electronic energy + Delta-G solvation = -22857.842608 eV Core-core repulsion = 19215.854376 eV Total energy + Delta-G solvation = -3641.988231 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.84250 -40.51995 -38.72748 -37.81822 -37.22823 -35.12082 -34.94412 -32.14893 -31.19760 -30.07479 -29.03230 -25.72641 -24.87739 -24.54313 -23.46141 -22.53248 -21.67961 -19.30819 -18.77368 -18.70312 -17.94907 -17.91377 -17.13677 -16.86354 -16.62848 -16.33183 -16.20503 -15.59376 -15.28034 -15.08237 -14.58386 -14.42294 -14.21329 -13.84516 -13.72056 -13.31997 -13.26049 -13.09702 -12.94332 -12.70542 -12.66069 -12.48351 -12.40836 -12.02649 -11.88741 -11.76743 -11.72775 -11.31314 -11.21936 -10.90266 -10.29226 -10.02829 -9.64249 -8.33004 -6.45570 -0.43139 0.19243 1.40008 1.44656 1.44854 1.53154 1.56225 2.33875 2.57509 3.00828 3.03095 3.14013 3.52922 3.66401 3.89375 3.92661 4.06606 4.22112 4.26127 4.33259 4.39802 4.48820 4.50180 4.57471 4.61468 4.69604 4.83665 4.98118 5.03414 5.11181 5.15675 5.20284 5.26167 5.39550 5.39893 5.46422 5.52977 5.74824 5.93734 6.47821 6.63634 6.67785 6.77725 7.25984 8.79030 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.019144 B = 0.003061 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.268455 B = 9144.412840 C = 9995.814941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.077 4.077 3 C -0.125 4.125 4 C -0.057 4.057 5 C -0.135 4.135 6 C -0.062 4.062 7 C -0.180 4.180 8 C 0.502 3.498 9 O -0.522 6.522 10 O -0.355 6.355 11 C 0.079 3.921 12 C 0.055 3.945 13 O -0.409 6.409 14 C 0.208 3.792 15 C -0.552 4.552 16 H 0.060 0.940 17 C 0.008 3.992 18 N -0.929 5.929 19 Si 0.983 3.017 20 H -0.266 1.266 21 H -0.274 1.274 22 H -0.264 1.264 23 C 0.162 3.838 24 O -0.489 6.489 25 H 0.060 0.940 26 H 0.072 0.928 27 H 0.046 0.954 28 H 0.095 0.905 29 H 0.071 0.929 30 H 0.169 0.831 31 H 0.161 0.839 32 H 0.133 0.867 33 H 0.072 0.928 34 H 0.106 0.894 35 H 0.084 0.916 36 H 0.057 0.943 37 H -0.008 1.008 38 H -0.010 1.010 39 H 0.272 0.728 40 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.044 -24.571 -6.291 25.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.114 4.114 3 C -0.125 4.125 4 C -0.075 4.075 5 C -0.153 4.153 6 C -0.080 4.080 7 C -0.182 4.182 8 C 0.349 3.651 9 O -0.413 6.413 10 O -0.271 6.271 11 C 0.006 3.994 12 C -0.022 4.022 13 O -0.329 6.329 14 C 0.133 3.867 15 C -0.589 4.589 16 H 0.078 0.922 17 C -0.191 4.191 18 N -0.568 5.568 19 Si 0.805 3.195 20 H -0.191 1.191 21 H -0.199 1.199 22 H -0.189 1.189 23 C 0.116 3.884 24 O -0.301 6.301 25 H 0.079 0.921 26 H 0.091 0.909 27 H 0.065 0.935 28 H 0.114 0.886 29 H 0.090 0.910 30 H 0.187 0.813 31 H 0.178 0.822 32 H 0.151 0.849 33 H 0.090 0.910 34 H 0.124 0.876 35 H 0.102 0.898 36 H 0.075 0.925 37 H 0.010 0.990 38 H 0.008 0.992 39 H 0.080 0.920 40 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -2.627 -24.772 -6.005 25.625 hybrid contribution -0.418 1.241 0.431 1.379 sum -3.045 -23.531 -5.573 24.373 Atomic orbital electron populations 1.21733 0.93945 1.02728 1.01939 1.20483 0.96672 0.90144 1.04088 1.20466 1.02141 0.98659 0.91281 1.21660 0.93278 0.94231 0.98318 1.21499 1.00281 0.95127 0.98398 1.21581 0.94876 1.00257 0.91294 1.19714 1.12204 0.94833 0.91457 1.21439 0.73712 0.80013 0.89967 1.90799 1.47802 1.69053 1.33654 1.86635 1.76845 1.26864 1.36792 1.23200 1.02982 0.90753 0.82462 1.22631 0.92608 0.89539 0.97383 1.87864 1.44005 1.25283 1.75742 1.19875 0.95117 0.77644 0.94036 1.21351 1.04132 0.96879 1.36571 0.92174 1.25947 0.98875 0.97472 0.96782 1.70049 1.27935 1.11718 1.47121 0.85243 0.78227 0.77158 0.78852 1.19122 1.19869 1.18907 1.18474 0.95633 0.87809 0.86466 1.84659 1.34750 1.74135 1.36585 0.92117 0.90861 0.93507 0.88635 0.91005 0.81311 0.82168 0.84878 0.90960 0.87570 0.89836 0.92520 0.99031 0.99235 0.91951 0.73530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.89 71.98 0.71 -0.80 16 2 C -0.08 -0.93 5.78 29.85 0.17 -0.76 16 3 C -0.12 -2.16 5.14 -19.79 -0.10 -2.26 16 4 C -0.06 -0.81 9.66 22.30 0.22 -0.59 16 5 C -0.14 -2.34 10.02 22.23 0.22 -2.11 16 6 C -0.06 -1.52 9.61 22.53 0.22 -1.31 16 7 C -0.18 -5.11 5.88 -20.02 -0.12 -5.23 16 8 C 0.50 17.07 7.89 70.23 0.55 17.63 16 9 O -0.52 -19.01 14.95 26.79 0.40 -18.61 16 10 O -0.35 -12.82 9.44 -54.04 -0.51 -13.33 16 11 C 0.08 2.64 5.85 71.98 0.42 3.06 16 12 C 0.06 2.07 6.33 71.98 0.46 2.52 16 13 O -0.41 -20.45 10.30 -145.57 -1.50 -21.94 16 14 C 0.21 11.76 5.69 71.24 0.41 12.16 16 15 C -0.55 -33.15 9.43 25.60 0.24 -32.91 16 16 H 0.06 3.59 7.81 -2.91 -0.02 3.57 16 17 C 0.01 0.46 5.46 84.66 0.46 0.92 16 18 N -0.93 -55.71 13.29 21.45 0.28 -55.42 16 19 Si 0.98 44.28 29.54 68.60 2.03 46.31 16 20 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 21 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 22 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 23 C 0.16 3.87 6.69 22.86 0.15 4.02 16 24 O -0.49 -11.68 10.71 -68.64 -0.74 -12.41 16 25 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.10 0.76 8.05 -2.39 -0.02 0.74 16 29 H 0.07 1.02 7.69 -2.38 -0.02 1.00 16 30 H 0.17 1.12 8.06 -2.91 -0.02 1.10 16 31 H 0.16 1.90 8.06 -2.91 -0.02 1.88 16 32 H 0.13 3.56 7.61 -2.91 -0.02 3.54 16 33 H 0.07 2.46 8.14 -2.38 -0.02 2.44 16 34 H 0.11 2.93 8.14 -2.39 -0.02 2.91 16 35 H 0.08 2.79 8.14 -2.38 -0.02 2.77 16 36 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 37 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 38 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 39 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 40 H 0.40 7.02 9.06 -74.06 -0.67 6.35 16 Total: -1.00 -74.86 350.81 4.36 -70.50 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: 0.37 Total: 10.55 kcal Atomic # 6 Polarization: -9.66 SS G_CDS: 4.01 Total: -5.64 kcal Atomic # 7 Polarization: -55.71 SS G_CDS: 0.28 Total: -55.42 kcal Atomic # 8 Polarization: -63.95 SS G_CDS: -2.34 Total: -66.30 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -74.86 4.36 -70.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815194418.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.271 kcal (2) G-P(sol) polarization free energy of solvation -74.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds