Wall clock time and date at job start Tue Mar 31 2020 07:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.47320 * 2 1 4 4 O 1.45201 * 109.47033 * 240.00030 * 2 1 3 5 5 C 1.34222 * 117.00093 * 89.99837 * 4 2 1 6 6 O 1.20831 * 120.00253 * 359.97438 * 5 4 2 7 7 C 1.50706 * 120.00086 * 179.97438 * 5 4 2 8 8 C 1.53001 * 109.47005 * 179.97438 * 7 5 4 9 9 C 1.53001 * 109.47025 * 180.02562 * 8 7 5 10 10 C 1.52996 * 109.47514 * 180.02562 * 9 8 7 11 11 C 1.50696 * 109.47503 * 179.97438 * 10 9 8 12 12 H 1.07999 * 119.99802 * 0.02562 * 11 10 9 13 13 C 1.37874 * 120.00063 * 179.97438 * 11 10 9 14 14 N 1.31521 * 120.00185 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 120.00164 * 180.02562 * 13 11 10 16 16 H 1.48507 * 109.47049 * 89.99885 * 15 13 11 17 17 H 1.48490 * 109.47551 * 210.00254 * 15 13 11 18 18 H 1.48504 * 109.46971 * 330.00506 * 15 13 11 19 19 C 1.50701 * 109.47328 * 119.99769 * 2 1 3 20 20 O 1.21439 * 119.99794 * 105.00342 * 19 2 1 21 21 C 1.41312 * 120.00361 * 284.99886 * 19 2 1 22 22 C 1.38064 * 126.12350 * 179.97438 * 21 19 2 23 23 C 1.40116 * 106.52436 * 179.97438 * 22 21 19 24 24 C 1.35295 * 107.22313 * 359.97438 * 23 22 21 25 25 O 1.33830 * 109.05931 * 0.02562 * 24 23 22 26 26 H 1.09000 * 109.46947 * 299.99768 * 1 2 3 27 27 H 1.08998 * 109.47618 * 60.00234 * 1 2 3 28 28 H 1.08997 * 109.47427 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47237 * 299.99931 * 7 5 4 30 30 H 1.09003 * 109.47090 * 60.00311 * 7 5 4 31 31 H 1.09000 * 109.47488 * 300.00180 * 8 7 5 32 32 H 1.08997 * 109.47111 * 60.00642 * 8 7 5 33 33 H 1.09000 * 109.46792 * 300.00187 * 9 8 7 34 34 H 1.09005 * 109.47447 * 59.99669 * 9 8 7 35 35 H 1.09000 * 109.47211 * 299.99890 * 10 9 8 36 36 H 1.09005 * 109.47066 * 59.99396 * 10 9 8 37 37 H 0.97000 * 120.00027 * 180.02562 * 14 13 11 38 38 H 1.08003 * 126.73707 * 359.97438 * 22 21 19 39 39 H 1.07997 * 126.38669 * 180.26849 * 23 22 21 40 40 H 1.08003 * 125.46622 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0139 -0.6845 -1.1856 5 6 2.2170 0.0639 -2.2811 6 8 1.9972 1.2517 -2.2507 7 6 2.7192 -0.5771 -3.5492 8 6 2.8630 0.4889 -4.6372 9 6 3.3722 -0.1620 -5.9248 10 6 3.5167 0.9040 -7.0127 11 6 4.0189 0.2630 -8.2807 12 1 4.2149 -0.7987 -8.3081 13 6 4.2270 1.0317 -9.4062 14 7 3.9877 2.3246 -9.3731 15 14 4.8488 0.2370 -10.9783 16 1 3.6935 -0.2075 -11.7987 17 1 5.6518 1.2217 -11.7466 18 1 5.6951 -0.9351 -10.6391 19 6 2.0323 -0.7104 1.2305 20 8 2.4914 -1.8309 1.1397 21 6 1.9693 -0.0725 2.4899 22 6 2.3906 -0.6030 3.6929 23 6 2.1394 0.3714 4.6679 24 6 1.5881 1.4348 4.0388 25 8 1.4871 1.1653 2.7318 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 3.6883 -1.0400 -3.3632 30 1 2.0103 -1.3373 -3.8774 31 1 1.8937 0.9515 -4.8231 32 1 3.5717 1.2494 -4.3093 33 1 4.3415 -0.6248 -5.7392 34 1 2.6634 -0.9224 -6.2526 35 1 2.5477 1.3673 -7.1985 36 1 4.2258 1.6641 -6.6847 37 1 4.1338 2.8653 -10.1650 38 1 2.8279 -1.5777 3.8513 39 1 2.3512 0.2907 5.7238 40 1 1.2792 2.3537 4.5150 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837729676.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:53 Heat of formation + Delta-G solvation = -126.301157 kcal Electronic energy + Delta-G solvation = -22304.127172 eV Core-core repulsion = 18664.631147 eV Total energy + Delta-G solvation = -3639.496025 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.24896 -40.82777 -39.45484 -36.72808 -34.96866 -33.72646 -32.88895 -32.51797 -30.46957 -29.77328 -26.19281 -25.65438 -23.63794 -22.51107 -22.13350 -20.59721 -20.21857 -20.01480 -18.33557 -17.61877 -16.96750 -16.81274 -16.40797 -16.15890 -15.97198 -15.05048 -14.88777 -14.40476 -14.30311 -13.82506 -13.62150 -13.48550 -13.25370 -13.09847 -12.73240 -12.65220 -12.31622 -11.95485 -11.73465 -11.64482 -11.05100 -10.99521 -10.63806 -10.59205 -10.57356 -10.45190 -10.45028 -10.19419 -9.63545 -9.27638 -9.27198 -9.01012 -8.30497 -5.95399 -3.97834 0.14525 1.69927 2.16062 2.24513 2.32823 2.48774 3.34787 3.40826 3.44294 3.56683 4.23910 4.29215 4.48858 4.51079 4.58634 4.68499 4.78138 5.02750 5.17530 5.19355 5.28111 5.29451 5.32681 5.38788 5.40122 5.69170 5.71685 5.75064 6.07140 6.18518 6.23339 6.33995 6.48342 6.78071 6.91883 6.95963 7.17581 7.73279 7.75989 7.88182 8.05481 8.47370 9.09713 9.65912 11.15898 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.043791 B = 0.002100 C = 0.002068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.254022 B =13329.005317 C =13535.282040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.044 3.956 3 H 0.115 0.885 4 O -0.339 6.339 5 C 0.460 3.540 6 O -0.503 6.503 7 C -0.111 4.111 8 C -0.108 4.108 9 C -0.110 4.110 10 C 0.020 3.980 11 C -0.520 4.520 12 H 0.055 0.945 13 C 0.055 3.945 14 N -0.896 5.896 15 Si 0.892 3.108 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.274 1.274 19 C 0.438 3.562 20 O -0.413 6.413 21 C -0.115 4.115 22 C -0.099 4.099 23 C -0.232 4.232 24 C 0.014 3.986 25 O -0.152 6.152 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.072 0.928 29 H 0.105 0.895 30 H 0.105 0.895 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.050 0.950 34 H 0.050 0.950 35 H 0.016 0.984 36 H 0.016 0.984 37 H 0.260 0.740 38 H 0.164 0.836 39 H 0.161 0.839 40 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.091 -3.855 30.431 31.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.012 4.012 3 H 0.133 0.867 4 O -0.256 6.256 5 C 0.304 3.696 6 O -0.389 6.389 7 C -0.148 4.148 8 C -0.146 4.146 9 C -0.148 4.148 10 C -0.017 4.017 11 C -0.558 4.558 12 H 0.073 0.927 13 C -0.146 4.146 14 N -0.535 5.535 15 Si 0.720 3.280 16 H -0.207 1.207 17 H -0.213 1.213 18 H -0.199 1.199 19 C 0.315 3.685 20 O -0.287 6.287 21 C -0.165 4.165 22 C -0.119 4.119 23 C -0.251 4.251 24 C -0.057 4.057 25 O -0.046 6.046 26 H 0.099 0.901 27 H 0.099 0.901 28 H 0.091 0.909 29 H 0.123 0.877 30 H 0.123 0.877 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.035 0.965 36 H 0.035 0.965 37 H 0.070 0.930 38 H 0.182 0.818 39 H 0.178 0.822 40 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -7.030 -3.751 30.054 31.092 hybrid contribution 0.333 -0.128 -0.525 0.635 sum -6.697 -3.879 29.528 30.526 Atomic orbital electron populations 1.22064 0.91341 1.03942 1.04442 1.22907 0.96784 0.98410 0.83086 0.86710 1.86679 1.77208 1.42025 1.19715 1.24378 0.73910 0.86199 0.85161 1.90665 1.47695 1.16688 1.83874 1.21635 1.03500 1.01000 0.88682 1.21587 1.02707 0.96498 0.93775 1.21654 0.99461 0.99803 0.93877 1.19098 0.97183 0.93495 0.91947 1.21276 1.43914 0.94561 0.96088 0.92674 1.25046 0.95759 0.94855 0.98964 1.69976 1.49246 1.04998 1.29272 0.86597 0.78849 0.79089 0.83467 1.20709 1.21271 1.19896 1.19504 0.76135 0.86475 0.86415 1.90689 1.33816 1.17292 1.86893 1.21493 1.11329 0.86472 0.97185 1.22557 0.97875 1.00887 0.90559 1.21929 1.07081 0.94443 1.01619 1.24672 0.99800 1.00904 0.80327 1.84137 1.63290 1.30242 1.26936 0.90053 0.90113 0.90891 0.87686 0.87662 0.91496 0.91520 0.93159 0.93154 0.96542 0.96540 0.93048 0.81824 0.82164 0.76896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 9.49 37.15 0.35 -1.14 16 2 C 0.04 0.51 2.70 -27.89 -0.08 0.44 16 3 H 0.12 1.34 7.16 -51.93 -0.37 0.97 16 4 O -0.34 -4.67 9.46 -45.74 -0.43 -5.10 16 5 C 0.46 6.79 7.93 36.01 0.29 7.08 16 6 O -0.50 -8.58 15.20 -18.75 -0.29 -8.87 16 7 C -0.11 -1.53 5.81 -27.88 -0.16 -1.70 16 8 C -0.11 -1.89 4.50 -26.73 -0.12 -2.01 16 9 C -0.11 -2.25 5.15 -26.73 -0.14 -2.39 16 10 C 0.02 0.52 4.97 -27.89 -0.14 0.38 16 11 C -0.52 -14.97 9.11 -34.44 -0.31 -15.28 16 12 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 13 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 14 N -0.90 -27.46 13.29 55.43 0.74 -26.72 16 15 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 16 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 17 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 18 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 19 C 0.44 4.96 6.26 -33.14 -0.21 4.75 16 20 O -0.41 -5.69 17.01 -13.73 -0.23 -5.92 16 21 C -0.12 -1.07 6.81 -38.48 -0.26 -1.33 16 22 C -0.10 -0.76 10.61 -38.94 -0.41 -1.17 16 23 C -0.23 -1.21 10.86 -39.93 -0.43 -1.65 16 24 C 0.01 0.07 12.06 29.68 0.36 0.42 16 25 O -0.15 -1.19 10.35 4.94 0.05 -1.14 16 26 H 0.08 0.60 8.00 -51.93 -0.42 0.19 16 27 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 30 H 0.11 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.07 1.21 8.10 -51.93 -0.42 0.79 16 32 H 0.07 1.22 8.10 -51.93 -0.42 0.80 16 33 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 38 H 0.16 1.09 8.06 -52.48 -0.42 0.66 16 39 H 0.16 0.43 8.06 -52.49 -0.42 0.01 16 40 H 0.21 0.12 8.06 -52.48 -0.42 -0.31 16 LS Contribution 354.62 15.07 5.34 5.34 Total: -1.00 -34.79 354.62 -7.03 -41.81 By element: Atomic # 1 Polarization: 1.56 SS G_CDS: -5.82 Total: -4.26 kcal Atomic # 6 Polarization: -10.71 SS G_CDS: -1.37 Total: -12.08 kcal Atomic # 7 Polarization: -27.46 SS G_CDS: 0.74 Total: -26.72 kcal Atomic # 8 Polarization: -20.13 SS G_CDS: -0.90 Total: -21.03 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.79 -7.03 -41.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837729676.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.489 kcal (2) G-P(sol) polarization free energy of solvation -34.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds