Wall clock time and date at job start Tue Mar 31 2020 07:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.47320 * 2 1 4 4 O 1.45201 * 109.47033 * 240.00030 * 2 1 3 5 5 C 1.34222 * 117.00093 * 89.99837 * 4 2 1 6 6 O 1.20831 * 120.00253 * 359.97438 * 5 4 2 7 7 C 1.50706 * 120.00086 * 179.97438 * 5 4 2 8 8 C 1.53001 * 109.47005 * 179.97438 * 7 5 4 9 9 C 1.53001 * 109.47025 * 180.02562 * 8 7 5 10 10 C 1.52996 * 109.47514 * 180.02562 * 9 8 7 11 11 C 1.50696 * 109.47503 * 179.97438 * 10 9 8 12 12 H 1.07999 * 119.99802 * 0.02562 * 11 10 9 13 13 C 1.37874 * 120.00063 * 179.97438 * 11 10 9 14 14 N 1.31521 * 120.00185 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 120.00164 * 180.02562 * 13 11 10 16 16 H 1.48507 * 109.47049 * 89.99885 * 15 13 11 17 17 H 1.48490 * 109.47551 * 210.00254 * 15 13 11 18 18 H 1.48504 * 109.46971 * 330.00506 * 15 13 11 19 19 C 1.50701 * 109.47328 * 119.99769 * 2 1 3 20 20 O 1.21439 * 119.99794 * 105.00342 * 19 2 1 21 21 C 1.41312 * 120.00361 * 284.99886 * 19 2 1 22 22 C 1.38064 * 126.12350 * 179.97438 * 21 19 2 23 23 C 1.40116 * 106.52436 * 179.97438 * 22 21 19 24 24 C 1.35295 * 107.22313 * 359.97438 * 23 22 21 25 25 O 1.33830 * 109.05931 * 0.02562 * 24 23 22 26 26 H 1.09000 * 109.46947 * 299.99768 * 1 2 3 27 27 H 1.08998 * 109.47618 * 60.00234 * 1 2 3 28 28 H 1.08997 * 109.47427 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47237 * 299.99931 * 7 5 4 30 30 H 1.09003 * 109.47090 * 60.00311 * 7 5 4 31 31 H 1.09000 * 109.47488 * 300.00180 * 8 7 5 32 32 H 1.08997 * 109.47111 * 60.00642 * 8 7 5 33 33 H 1.09000 * 109.46792 * 300.00187 * 9 8 7 34 34 H 1.09005 * 109.47447 * 59.99669 * 9 8 7 35 35 H 1.09000 * 109.47211 * 299.99890 * 10 9 8 36 36 H 1.09005 * 109.47066 * 59.99396 * 10 9 8 37 37 H 0.97000 * 120.00027 * 180.02562 * 14 13 11 38 38 H 1.08003 * 126.73707 * 359.97438 * 22 21 19 39 39 H 1.07997 * 126.38669 * 180.26849 * 23 22 21 40 40 H 1.08003 * 125.46622 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0139 -0.6845 -1.1856 5 6 2.2170 0.0639 -2.2811 6 8 1.9972 1.2517 -2.2507 7 6 2.7192 -0.5771 -3.5492 8 6 2.8630 0.4889 -4.6372 9 6 3.3722 -0.1620 -5.9248 10 6 3.5167 0.9040 -7.0127 11 6 4.0189 0.2630 -8.2807 12 1 4.2149 -0.7987 -8.3081 13 6 4.2270 1.0317 -9.4062 14 7 3.9877 2.3246 -9.3731 15 14 4.8488 0.2370 -10.9783 16 1 3.6935 -0.2075 -11.7987 17 1 5.6518 1.2217 -11.7466 18 1 5.6951 -0.9351 -10.6391 19 6 2.0323 -0.7104 1.2305 20 8 2.4914 -1.8309 1.1397 21 6 1.9693 -0.0725 2.4899 22 6 2.3906 -0.6030 3.6929 23 6 2.1394 0.3714 4.6679 24 6 1.5881 1.4348 4.0388 25 8 1.4871 1.1653 2.7318 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 3.6883 -1.0400 -3.3632 30 1 2.0103 -1.3373 -3.8774 31 1 1.8937 0.9515 -4.8231 32 1 3.5717 1.2494 -4.3093 33 1 4.3415 -0.6248 -5.7392 34 1 2.6634 -0.9224 -6.2526 35 1 2.5477 1.3673 -7.1985 36 1 4.2258 1.6641 -6.6847 37 1 4.1338 2.8653 -10.1650 38 1 2.8279 -1.5777 3.8513 39 1 2.3512 0.2907 5.7238 40 1 1.2792 2.3537 4.5150 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837729676.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:52 Heat of formation + Delta-G solvation = -145.833705 kcal Electronic energy + Delta-G solvation = -22304.974167 eV Core-core repulsion = 18664.631147 eV Total energy + Delta-G solvation = -3640.343020 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.77781 -41.90185 -40.39091 -37.87508 -36.63617 -34.68937 -34.24447 -33.59409 -31.65682 -30.91736 -27.81547 -26.57512 -24.95075 -23.60389 -22.80555 -21.96629 -21.46022 -20.96133 -19.14489 -18.66856 -18.36205 -17.77192 -17.65447 -17.36700 -16.67363 -16.49768 -16.20948 -15.87202 -15.47778 -14.65074 -14.45643 -14.32359 -14.24545 -14.05487 -13.82953 -13.66455 -13.61121 -13.42947 -13.35517 -12.88367 -12.81773 -12.36464 -12.20959 -12.20079 -12.05823 -11.71187 -11.39118 -11.31412 -11.15109 -11.13314 -11.00521 -10.53986 -9.79859 -8.18298 -6.29816 -0.52342 1.07145 1.19884 1.33600 1.41131 1.42932 1.54099 1.68446 1.82028 2.42414 2.76032 3.14553 3.54795 3.73967 3.78321 3.81447 3.84657 3.94738 4.07590 4.09126 4.42242 4.47683 4.55251 4.59537 4.62258 4.76912 4.82646 4.85153 4.86357 4.96019 5.14087 5.17018 5.30312 5.32035 5.37258 5.56846 5.71521 5.78317 5.88778 6.15666 6.26258 6.61973 6.88432 7.39530 8.93760 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.043791 B = 0.002100 C = 0.002068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.254022 B =13329.005317 C =13535.282040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.037 3.963 3 H 0.111 0.889 4 O -0.343 6.343 5 C 0.465 3.535 6 O -0.532 6.532 7 C -0.103 4.103 8 C -0.099 4.099 9 C -0.097 4.097 10 C 0.019 3.981 11 C -0.541 4.541 12 H 0.065 0.935 13 C -0.007 4.007 14 N -0.936 5.936 15 Si 0.968 3.032 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.261 1.261 19 C 0.444 3.556 20 O -0.453 6.453 21 C -0.153 4.153 22 C -0.094 4.094 23 C -0.239 4.239 24 C 0.035 3.965 25 O -0.164 6.164 26 H 0.101 0.899 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.126 0.874 30 H 0.131 0.869 31 H 0.054 0.946 32 H 0.051 0.949 33 H 0.061 0.939 34 H 0.063 0.937 35 H -0.012 1.012 36 H -0.013 1.013 37 H 0.263 0.737 38 H 0.167 0.833 39 H 0.189 0.811 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.214 -4.814 31.966 33.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.019 4.019 3 H 0.128 0.872 4 O -0.260 6.260 5 C 0.310 3.690 6 O -0.421 6.421 7 C -0.140 4.140 8 C -0.136 4.136 9 C -0.135 4.135 10 C -0.018 4.018 11 C -0.579 4.579 12 H 0.083 0.917 13 C -0.204 4.204 14 N -0.577 5.577 15 Si 0.793 3.207 16 H -0.197 1.197 17 H -0.209 1.209 18 H -0.185 1.185 19 C 0.324 3.676 20 O -0.330 6.330 21 C -0.202 4.202 22 C -0.114 4.114 23 C -0.257 4.257 24 C -0.035 4.035 25 O -0.059 6.059 26 H 0.120 0.880 27 H 0.092 0.908 28 H 0.095 0.905 29 H 0.144 0.856 30 H 0.149 0.851 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.007 0.993 36 H 0.006 0.994 37 H 0.071 0.929 38 H 0.185 0.815 39 H 0.206 0.794 40 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -7.161 -4.726 31.609 32.753 hybrid contribution 0.341 0.284 -0.824 0.936 sum -6.820 -4.442 30.785 31.842 Atomic orbital electron populations 1.22049 0.89656 1.04405 1.05047 1.23184 0.98231 0.98042 0.82464 0.87170 1.86651 1.77084 1.42164 1.20116 1.24440 0.73219 0.85722 0.85624 1.90656 1.49151 1.17926 1.84417 1.21530 1.05431 0.99957 0.87110 1.21355 1.01406 0.97083 0.93795 1.21449 1.00676 0.98181 0.93164 1.19051 0.94666 0.94434 0.93676 1.21752 1.43857 0.95207 0.97121 0.91677 1.26070 0.95879 0.95392 1.03055 1.70124 1.50352 1.06707 1.30503 0.85398 0.78505 0.78313 0.78522 1.19739 1.20936 1.18487 1.19523 0.75068 0.85960 0.87030 1.90663 1.36171 1.18718 1.87455 1.21151 1.14596 0.87710 0.96764 1.22867 0.96360 1.01434 0.90738 1.22308 1.07032 0.93727 1.02632 1.25671 0.96931 1.01900 0.79039 1.84135 1.63537 1.29612 1.28643 0.88028 0.90843 0.90469 0.85569 0.85138 0.92714 0.92981 0.92007 0.91803 0.99330 0.99439 0.92862 0.81530 0.79362 0.72571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.83 9.49 71.98 0.68 -2.15 16 2 C 0.04 0.86 2.70 29.85 0.08 0.94 16 3 H 0.11 2.66 7.16 -2.39 -0.02 2.65 16 4 O -0.34 -9.45 9.46 -45.12 -0.43 -9.88 16 5 C 0.47 13.67 7.93 71.24 0.56 14.24 16 6 O -0.53 -18.53 15.20 21.95 0.33 -18.20 16 7 C -0.10 -2.73 5.81 29.85 0.17 -2.56 16 8 C -0.10 -3.45 4.50 30.59 0.14 -3.32 16 9 C -0.10 -3.93 5.15 30.59 0.16 -3.77 16 10 C 0.02 1.02 4.97 29.85 0.15 1.17 16 11 C -0.54 -31.35 9.11 25.60 0.23 -31.12 16 12 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 13 C -0.01 -0.40 5.46 84.65 0.46 0.07 16 14 N -0.94 -58.65 13.29 21.45 0.28 -58.36 16 15 Si 0.97 44.97 29.54 68.60 2.03 47.00 16 16 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 17 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 18 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 19 C 0.44 10.26 6.26 26.44 0.17 10.42 16 20 O -0.45 -12.87 17.01 14.79 0.25 -12.62 16 21 C -0.15 -2.78 6.81 22.98 0.16 -2.62 16 22 C -0.09 -1.33 10.61 22.68 0.24 -1.09 16 23 C -0.24 -1.81 10.86 22.05 0.24 -1.57 16 24 C 0.03 0.22 12.06 67.14 0.81 1.03 16 25 O -0.16 -2.33 10.35 -5.24 -0.05 -2.38 16 26 H 0.10 1.41 8.00 -2.39 -0.02 1.40 16 27 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.13 2.86 8.14 -2.39 -0.02 2.84 16 30 H 0.13 2.85 8.14 -2.39 -0.02 2.83 16 31 H 0.05 2.03 8.10 -2.39 -0.02 2.01 16 32 H 0.05 1.95 8.10 -2.39 -0.02 1.93 16 33 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 34 H 0.06 2.41 8.14 -2.38 -0.02 2.39 16 35 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 36 H -0.01 -0.76 8.14 -2.38 -0.02 -0.78 16 37 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 38 H 0.17 2.13 8.06 -2.91 -0.02 2.10 16 39 H 0.19 0.29 8.06 -2.91 -0.02 0.27 16 40 H 0.26 -0.95 8.06 -2.91 -0.02 -0.97 16 Total: -1.00 -77.70 354.62 7.70 -70.01 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: 1.03 Total: 4.77 kcal Atomic # 6 Polarization: -24.59 SS G_CDS: 4.25 Total: -20.33 kcal Atomic # 7 Polarization: -58.65 SS G_CDS: 0.28 Total: -58.36 kcal Atomic # 8 Polarization: -43.19 SS G_CDS: 0.10 Total: -43.08 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -77.70 7.70 -70.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837729676.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.825 kcal (2) G-P(sol) polarization free energy of solvation -77.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds