Wall clock time and date at job start Tue Mar 31 2020 06:38:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47419 * 2 1 4 4 C 1.50692 * 109.47187 * 239.99487 * 2 1 3 5 5 H 1.08000 * 120.00648 * 239.99775 * 4 2 1 6 6 C 1.37881 * 119.99905 * 60.00575 * 4 2 1 7 7 N 1.31512 * 119.99753 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00108 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47247 * 59.99645 * 8 6 4 10 10 H 1.48504 * 109.47324 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.47387 * 299.99461 * 8 6 4 12 12 C 1.53000 * 109.47243 * 119.99711 * 2 1 3 13 13 N 1.46902 * 109.47258 * 300.00477 * 12 2 1 14 14 C 1.46898 * 111.00143 * 179.97438 * 13 12 2 15 15 H 1.08996 * 110.27893 * 324.35192 * 14 13 12 16 16 C 1.54376 * 110.31372 * 202.14332 * 14 13 12 17 17 C 1.54333 * 102.38240 * 214.79892 * 16 14 13 18 18 C 1.51476 * 105.21767 * 26.33842 * 17 16 14 19 19 N 1.32326 * 130.12190 * 162.79876 * 18 17 16 20 20 C 1.31774 * 122.01863 * 179.97438 * 19 18 17 21 21 Cl 1.73601 * 119.61850 * 180.28412 * 20 19 18 22 22 C 1.38405 * 120.76416 * 0.02562 * 20 19 18 23 23 C 1.38508 * 118.98059 * 0.02562 * 22 20 19 24 24 C 1.38143 * 109.59558 * 342.79732 * 18 17 16 25 25 H 1.09003 * 109.47494 * 300.00383 * 1 2 3 26 26 H 1.08995 * 109.47198 * 59.99954 * 1 2 3 27 27 H 1.08998 * 109.47341 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47438 * 179.97438 * 3 2 1 29 29 H 1.09003 * 109.46768 * 299.99872 * 3 2 1 30 30 H 1.09003 * 109.47100 * 59.99376 * 3 2 1 31 31 H 0.97008 * 120.00115 * 180.02562 * 7 6 4 32 32 H 1.09001 * 109.47632 * 179.97438 * 12 2 1 33 33 H 1.09006 * 109.47194 * 60.00000 * 12 2 1 34 34 H 1.00908 * 110.99365 * 303.94824 * 13 12 2 35 35 H 1.09001 * 110.81875 * 333.02152 * 16 14 13 36 36 H 1.08998 * 110.81850 * 96.57833 * 16 14 13 37 37 H 1.09006 * 110.29184 * 145.27521 * 17 16 14 38 38 H 1.09000 * 110.29715 * 267.30143 * 17 16 14 39 39 H 1.08000 * 120.50807 * 179.97438 * 22 20 19 40 40 H 1.07996 * 120.71275 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2303 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3213 -1.1205 -4.0078 9 1 1.8258 -2.5204 -4.0075 10 1 1.8260 -0.4208 -5.2204 11 1 3.8063 -1.1211 -4.0081 12 6 2.0400 -0.7212 1.2493 13 7 1.5503 -0.0287 2.4487 14 6 2.0208 -0.6951 3.6704 15 1 2.0540 -1.7745 3.5230 16 6 1.1031 -0.3426 4.8606 17 6 2.0966 -0.2903 6.0404 18 6 3.4336 0.0578 5.4193 19 7 4.5402 0.5184 5.9798 20 6 5.6268 0.7692 5.2779 21 17 7.0470 1.3654 6.0787 22 6 5.6506 0.5578 3.9103 23 6 4.5117 0.0773 3.2855 24 6 3.3872 -0.1760 4.0586 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9562 -0.8900 30 1 1.6766 1.9563 0.8899 31 1 0.7082 1.1608 -3.4844 32 1 3.1300 -0.7216 1.2491 33 1 1.6767 -1.7489 1.2493 34 1 1.8198 0.9437 2.4401 35 1 0.6288 0.6273 4.7101 36 1 0.3559 -1.1205 5.0174 37 1 1.7983 0.4796 6.7520 38 1 2.1487 -1.2607 6.5341 39 1 6.5433 0.7652 3.3389 40 1 4.4994 -0.0982 2.2200 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840787641.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:13 Heat of formation + Delta-G solvation = 22.980869 kcal Electronic energy + Delta-G solvation = -21545.621725 eV Core-core repulsion = 18385.600970 eV Total energy + Delta-G solvation = -3160.020755 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.95756 -37.68176 -36.69192 -35.73732 -33.47540 -32.22117 -30.52167 -29.28042 -26.54789 -25.62815 -25.25400 -23.68632 -23.51866 -21.90885 -20.56728 -18.53569 -17.05775 -16.98379 -15.97577 -15.80170 -15.40947 -14.83413 -14.46812 -14.19320 -13.65987 -13.50271 -12.97954 -12.83469 -12.52202 -12.34370 -12.12093 -11.98091 -11.78291 -11.46170 -11.42186 -11.15007 -11.04981 -10.86349 -10.71116 -10.63688 -10.25320 -10.11036 -9.95058 -9.67526 -9.45337 -9.13544 -8.83604 -8.68525 -8.33385 -7.80578 -5.95779 -4.06719 0.79534 1.06918 1.65301 3.29275 3.34746 3.36929 3.47247 3.88868 4.28267 4.40389 4.67064 4.74496 4.83997 5.01218 5.04855 5.19868 5.29871 5.32842 5.55638 5.65639 5.72289 5.80720 5.92702 6.13971 6.14400 6.23318 6.32958 6.39426 6.64678 6.81427 6.99864 7.09736 7.31410 7.39348 7.60549 7.61660 7.70073 7.77072 7.82938 8.14706 8.28667 8.49710 8.94428 9.58743 11.04593 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.020028 B = 0.003891 C = 0.003437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.682220 B = 7194.740040 C = 8143.842848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.070 3.930 3 C -0.132 4.132 4 C -0.509 4.509 5 H 0.051 0.949 6 C 0.067 3.933 7 N -0.884 5.884 8 Si 0.888 3.112 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.279 1.279 12 C 0.071 3.929 13 N -0.671 5.671 14 C 0.127 3.873 15 H 0.096 0.904 16 C -0.105 4.105 17 C -0.070 4.070 18 C 0.139 3.861 19 N -0.480 5.480 20 C 0.177 3.823 21 Cl -0.039 7.039 22 C -0.155 4.155 23 C -0.047 4.047 24 C -0.169 4.169 25 H 0.020 0.980 26 H 0.074 0.926 27 H 0.018 0.982 28 H 0.018 0.982 29 H 0.084 0.916 30 H 0.010 0.990 31 H 0.259 0.741 32 H 0.016 0.984 33 H 0.058 0.942 34 H 0.342 0.658 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.146 0.854 40 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.164 -0.703 15.054 15.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.069 3.931 3 C -0.190 4.190 4 C -0.548 4.548 5 H 0.069 0.931 6 C -0.134 4.134 7 N -0.522 5.522 8 Si 0.716 3.284 9 H -0.204 1.204 10 H -0.213 1.213 11 H -0.205 1.205 12 C -0.057 4.057 13 N -0.301 5.301 14 C 0.015 3.985 15 H 0.113 0.887 16 C -0.143 4.143 17 C -0.108 4.108 18 C 0.001 3.999 19 N -0.191 5.191 20 C 0.012 3.988 21 Cl -0.011 7.011 22 C -0.176 4.176 23 C -0.073 4.073 24 C -0.173 4.173 25 H 0.039 0.961 26 H 0.093 0.907 27 H 0.038 0.962 28 H 0.037 0.963 29 H 0.102 0.898 30 H 0.029 0.971 31 H 0.069 0.931 32 H 0.034 0.966 33 H 0.077 0.923 34 H 0.162 0.838 35 H 0.102 0.898 36 H 0.105 0.895 37 H 0.104 0.896 38 H 0.109 0.891 39 H 0.164 0.836 40 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 4.600 -0.702 15.843 16.512 hybrid contribution 1.731 -0.271 -1.687 2.432 sum 6.331 -0.973 14.155 15.537 Atomic orbital electron populations 1.21645 0.97334 0.98629 1.00142 1.18085 0.93264 0.91881 0.89866 1.21840 0.97618 0.99210 1.00325 1.21046 1.31365 1.11926 0.90464 0.93069 1.24873 0.94961 0.94926 0.98679 1.69817 1.36561 1.22738 1.23091 0.86733 0.79090 0.79875 0.82683 1.20386 1.21346 1.20479 1.22308 0.95639 0.97933 0.89842 1.60773 1.62245 1.06536 1.00587 1.21184 0.86110 0.99218 0.91965 0.88662 1.22373 0.96733 1.03696 0.91497 1.21094 0.88318 1.02714 0.98684 1.21746 0.92933 0.93450 0.91805 1.66010 0.98617 1.13025 1.41410 1.21332 0.89187 0.99156 0.89097 1.98393 1.35044 1.86106 1.81551 1.21776 1.00429 1.02164 0.93185 1.21373 0.90584 0.94001 1.01322 1.22598 0.98465 1.00419 0.95783 0.96099 0.90721 0.96247 0.96289 0.89771 0.97149 0.93083 0.96601 0.92316 0.83850 0.89770 0.89503 0.89580 0.89107 0.83601 0.83296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.78 8.09 37.16 0.30 -2.48 16 2 C 0.07 1.58 0.57 -155.67 -0.09 1.50 16 3 C -0.13 -2.97 7.92 37.16 0.29 -2.67 16 4 C -0.51 -13.11 8.01 -34.44 -0.28 -13.39 16 5 H 0.05 1.31 7.74 -52.49 -0.41 0.91 16 6 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 7 N -0.88 -23.79 9.35 55.43 0.52 -23.27 16 8 Si 0.89 20.56 29.54 -169.99 -5.02 15.54 16 9 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 C 0.07 1.34 4.36 -3.82 -0.02 1.32 16 13 N -0.67 -10.73 5.48 -106.90 -0.59 -11.32 16 14 C 0.13 1.66 3.18 -67.88 -0.22 1.44 16 15 H 0.10 1.25 7.86 -51.93 -0.41 0.84 16 16 C -0.10 -1.11 6.78 -25.31 -0.17 -1.28 16 17 C -0.07 -0.71 6.77 -26.80 -0.18 -0.89 16 18 C 0.14 1.84 7.32 -82.03 -0.60 1.24 16 19 N -0.48 -6.92 10.33 -6.33 -0.07 -6.98 16 20 C 0.18 2.39 7.27 -17.51 -0.13 2.26 16 21 Cl -0.04 -0.46 29.11 -51.86 -1.51 -1.97 16 22 C -0.15 -1.95 9.89 -39.42 -0.39 -2.34 16 23 C -0.05 -0.64 9.79 -39.28 -0.38 -1.02 16 24 C -0.17 -2.27 5.53 -104.19 -0.58 -2.85 16 25 H 0.02 0.44 7.60 -51.93 -0.39 0.04 16 26 H 0.07 1.93 6.07 -51.93 -0.32 1.61 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.08 2.13 6.07 -51.93 -0.32 1.82 16 30 H 0.01 0.20 6.57 -51.93 -0.34 -0.14 16 31 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 32 H 0.02 0.30 5.70 -51.93 -0.30 0.00 16 33 H 0.06 1.15 8.07 -51.93 -0.42 0.73 16 34 H 0.34 5.64 6.53 -39.29 -0.26 5.38 16 35 H 0.08 0.93 8.09 -51.93 -0.42 0.51 16 36 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.15 1.51 8.06 -52.49 -0.42 1.09 16 40 H 0.15 2.06 5.97 -52.49 -0.31 1.75 16 LS Contribution 329.10 15.07 4.96 4.96 Total: -1.00 -27.01 329.10 -9.78 -36.80 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -5.56 Total: 3.74 kcal Atomic # 6 Polarization: -14.97 SS G_CDS: -2.52 Total: -17.49 kcal Atomic # 7 Polarization: -41.44 SS G_CDS: -0.13 Total: -41.57 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Atomic # 17 Polarization: -0.46 SS G_CDS: -1.51 Total: -1.97 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -27.01 -9.78 -36.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840787641.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.779 kcal (2) G-P(sol) polarization free energy of solvation -27.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds