Wall clock time and date at job start Tue Mar 31 2020 06:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47419 * 2 1 4 4 C 1.50692 * 109.47187 * 239.99487 * 2 1 3 5 5 H 1.08000 * 120.00648 * 239.99775 * 4 2 1 6 6 C 1.37881 * 119.99905 * 60.00575 * 4 2 1 7 7 N 1.31512 * 119.99753 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00108 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47247 * 59.99645 * 8 6 4 10 10 H 1.48504 * 109.47324 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.47387 * 299.99461 * 8 6 4 12 12 C 1.53000 * 109.47243 * 119.99711 * 2 1 3 13 13 N 1.46902 * 109.47258 * 300.00477 * 12 2 1 14 14 C 1.46898 * 111.00143 * 179.97438 * 13 12 2 15 15 H 1.08996 * 110.27893 * 324.35192 * 14 13 12 16 16 C 1.54376 * 110.31372 * 202.14332 * 14 13 12 17 17 C 1.54333 * 102.38240 * 214.79892 * 16 14 13 18 18 C 1.51476 * 105.21767 * 26.33842 * 17 16 14 19 19 N 1.32326 * 130.12190 * 162.79876 * 18 17 16 20 20 C 1.31774 * 122.01863 * 179.97438 * 19 18 17 21 21 Cl 1.73601 * 119.61850 * 180.28412 * 20 19 18 22 22 C 1.38405 * 120.76416 * 0.02562 * 20 19 18 23 23 C 1.38508 * 118.98059 * 0.02562 * 22 20 19 24 24 C 1.38143 * 109.59558 * 342.79732 * 18 17 16 25 25 H 1.09003 * 109.47494 * 300.00383 * 1 2 3 26 26 H 1.08995 * 109.47198 * 59.99954 * 1 2 3 27 27 H 1.08998 * 109.47341 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47438 * 179.97438 * 3 2 1 29 29 H 1.09003 * 109.46768 * 299.99872 * 3 2 1 30 30 H 1.09003 * 109.47100 * 59.99376 * 3 2 1 31 31 H 0.97008 * 120.00115 * 180.02562 * 7 6 4 32 32 H 1.09001 * 109.47632 * 179.97438 * 12 2 1 33 33 H 1.09006 * 109.47194 * 60.00000 * 12 2 1 34 34 H 1.00908 * 110.99365 * 303.94824 * 13 12 2 35 35 H 1.09001 * 110.81875 * 333.02152 * 16 14 13 36 36 H 1.08998 * 110.81850 * 96.57833 * 16 14 13 37 37 H 1.09006 * 110.29184 * 145.27521 * 17 16 14 38 38 H 1.09000 * 110.29715 * 267.30143 * 17 16 14 39 39 H 1.08000 * 120.50807 * 179.97438 * 22 20 19 40 40 H 1.07996 * 120.71275 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2303 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3213 -1.1205 -4.0078 9 1 1.8258 -2.5204 -4.0075 10 1 1.8260 -0.4208 -5.2204 11 1 3.8063 -1.1211 -4.0081 12 6 2.0400 -0.7212 1.2493 13 7 1.5503 -0.0287 2.4487 14 6 2.0208 -0.6951 3.6704 15 1 2.0540 -1.7745 3.5230 16 6 1.1031 -0.3426 4.8606 17 6 2.0966 -0.2903 6.0404 18 6 3.4336 0.0578 5.4193 19 7 4.5402 0.5184 5.9798 20 6 5.6268 0.7692 5.2779 21 17 7.0470 1.3654 6.0787 22 6 5.6506 0.5578 3.9103 23 6 4.5117 0.0773 3.2855 24 6 3.3872 -0.1760 4.0586 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9562 -0.8900 30 1 1.6766 1.9563 0.8899 31 1 0.7082 1.1608 -3.4844 32 1 3.1300 -0.7216 1.2491 33 1 1.6767 -1.7489 1.2493 34 1 1.8198 0.9437 2.4401 35 1 0.6288 0.6273 4.7101 36 1 0.3559 -1.1205 5.0174 37 1 1.7983 0.4796 6.7520 38 1 2.1487 -1.2607 6.5341 39 1 6.5433 0.7652 3.3389 40 1 4.4994 -0.0982 2.2200 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840787641.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:12 Heat of formation + Delta-G solvation = 8.909930 kcal Electronic energy + Delta-G solvation = -21546.231887 eV Core-core repulsion = 18385.600970 eV Total energy + Delta-G solvation = -3160.630916 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.119 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.95590 -38.92838 -37.89158 -36.96970 -34.78835 -33.57281 -32.12200 -30.22537 -27.72557 -27.47990 -27.19655 -25.03634 -24.62060 -22.90385 -21.56652 -20.30878 -18.12158 -18.04558 -17.71323 -16.92168 -16.68463 -16.41283 -15.67382 -15.34225 -14.99278 -14.82769 -14.30075 -14.15386 -13.91264 -13.64075 -13.28459 -13.20073 -12.96520 -12.87666 -12.72486 -12.67310 -12.44651 -12.36583 -12.27188 -12.08984 -12.02322 -11.72320 -11.29129 -10.98413 -10.87142 -10.69883 -10.56892 -10.31583 -9.82206 -9.09319 -7.94411 -6.10987 -0.20539 0.05094 0.67728 1.44405 1.46157 1.51838 2.46079 2.48685 2.96658 3.24887 3.28274 3.57915 3.74837 3.85974 4.03251 4.11970 4.28394 4.40984 4.57155 4.60924 4.67190 4.71210 4.88703 4.92408 4.96148 5.01131 5.12009 5.20732 5.25922 5.29613 5.32717 5.42172 5.46850 5.58707 5.72620 5.80597 6.19007 6.26999 6.36689 6.50050 6.59534 6.62859 6.99130 7.56857 9.03196 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.020028 B = 0.003891 C = 0.003437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.682220 B = 7194.740040 C = 8143.842848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.061 3.939 3 C -0.120 4.120 4 C -0.525 4.525 5 H 0.046 0.954 6 C 0.024 3.976 7 N -0.903 5.903 8 Si 0.940 3.060 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.276 1.276 12 C 0.086 3.914 13 N -0.670 5.670 14 C 0.126 3.874 15 H 0.097 0.903 16 C -0.095 4.095 17 C -0.063 4.063 18 C 0.133 3.867 19 N -0.498 5.498 20 C 0.166 3.834 21 Cl -0.028 7.028 22 C -0.154 4.154 23 C -0.057 4.057 24 C -0.178 4.178 25 H 0.036 0.964 26 H 0.045 0.955 27 H 0.011 0.989 28 H 0.017 0.983 29 H 0.053 0.947 30 H 0.030 0.970 31 H 0.256 0.744 32 H 0.018 0.982 33 H 0.052 0.948 34 H 0.339 0.661 35 H 0.080 0.920 36 H 0.106 0.894 37 H 0.098 0.902 38 H 0.110 0.890 39 H 0.165 0.835 40 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.372 -1.189 16.427 17.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.060 3.940 3 C -0.178 4.178 4 C -0.563 4.563 5 H 0.064 0.936 6 C -0.175 4.175 7 N -0.542 5.542 8 Si 0.767 3.233 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.201 1.201 12 C -0.043 4.043 13 N -0.300 5.300 14 C 0.015 3.985 15 H 0.115 0.885 16 C -0.133 4.133 17 C -0.101 4.101 18 C -0.006 4.006 19 N -0.209 5.209 20 C 0.002 3.998 21 Cl 0.000 7.000 22 C -0.175 4.175 23 C -0.083 4.083 24 C -0.182 4.182 25 H 0.055 0.945 26 H 0.064 0.936 27 H 0.031 0.969 28 H 0.036 0.964 29 H 0.072 0.928 30 H 0.049 0.951 31 H 0.066 0.934 32 H 0.036 0.964 33 H 0.071 0.929 34 H 0.159 0.841 35 H 0.099 0.901 36 H 0.125 0.875 37 H 0.116 0.884 38 H 0.128 0.872 39 H 0.183 0.817 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 4.816 -1.193 17.229 17.929 hybrid contribution 1.699 -0.111 -2.078 2.687 sum 6.515 -1.303 15.151 16.544 Atomic orbital electron populations 1.21482 0.97754 0.97852 0.99401 1.18127 0.92892 0.92157 0.90790 1.21658 0.97385 0.98971 0.99765 1.21411 1.31135 1.11914 0.91880 0.93560 1.25493 0.95355 0.95603 1.01051 1.69960 1.37356 1.23651 1.23217 0.85907 0.78637 0.78879 0.79885 1.20179 1.21407 1.20128 1.21956 0.95565 0.97181 0.89581 1.60713 1.62329 1.06277 1.00644 1.21301 0.86676 0.99025 0.91456 0.88489 1.22354 0.96642 1.04167 0.90178 1.21174 0.86313 1.04064 0.98550 1.22236 0.93648 0.92703 0.91979 1.66080 0.99200 1.13739 1.41927 1.21562 0.89507 0.99203 0.89553 1.98392 1.34302 1.85923 1.81361 1.21959 1.00850 1.01582 0.93122 1.21421 0.91218 0.94560 1.01119 1.22663 0.98526 1.00807 0.96169 0.94532 0.93577 0.96930 0.96383 0.92813 0.95093 0.93441 0.96415 0.92940 0.84138 0.90097 0.87541 0.88384 0.87199 0.81748 0.83978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.96 8.09 71.98 0.58 -4.38 16 2 C 0.06 2.75 0.57 -52.93 -0.03 2.72 16 3 C -0.12 -5.36 7.92 71.98 0.57 -4.79 16 4 C -0.52 -27.05 8.01 25.60 0.21 -26.84 16 5 H 0.05 2.37 7.74 -2.91 -0.02 2.35 16 6 C 0.02 1.27 5.15 84.66 0.44 1.71 16 7 N -0.90 -49.24 9.35 21.45 0.20 -49.04 16 8 Si 0.94 42.25 29.54 68.60 2.03 44.27 16 9 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 10 H -0.29 -12.89 7.11 99.48 0.71 -12.19 16 11 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 12 C 0.09 3.18 4.36 86.30 0.38 3.55 16 13 N -0.67 -20.36 5.48 -492.13 -2.70 -23.06 16 14 C 0.13 3.06 3.18 44.81 0.14 3.20 16 15 H 0.10 2.34 7.86 -2.39 -0.02 2.32 16 16 C -0.10 -1.74 6.78 31.51 0.21 -1.52 16 17 C -0.06 -1.09 6.77 30.55 0.21 -0.88 16 18 C 0.13 3.25 7.32 42.71 0.31 3.56 16 19 N -0.50 -13.58 10.33 -173.93 -1.80 -15.37 16 20 C 0.17 4.26 7.27 84.74 0.62 4.88 16 21 Cl -0.03 -0.63 29.11 -2.72 -0.08 -0.71 16 22 C -0.15 -3.71 9.89 22.37 0.22 -3.49 16 23 C -0.06 -1.50 9.79 22.47 0.22 -1.28 16 24 C -0.18 -4.51 5.53 -19.59 -0.11 -4.62 16 25 H 0.04 1.53 7.60 -2.39 -0.02 1.51 16 26 H 0.05 2.39 6.07 -2.39 -0.01 2.38 16 27 H 0.01 0.54 8.14 -2.39 -0.02 0.53 16 28 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.05 2.74 6.07 -2.39 -0.01 2.73 16 30 H 0.03 1.21 6.57 -2.39 -0.02 1.20 16 31 H 0.26 13.58 8.31 -92.70 -0.77 12.81 16 32 H 0.02 0.65 5.70 -2.39 -0.01 0.63 16 33 H 0.05 2.00 8.07 -2.38 -0.02 1.98 16 34 H 0.34 10.66 6.53 -89.69 -0.59 10.07 16 35 H 0.08 1.56 8.09 -2.39 -0.02 1.55 16 36 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.10 1.51 8.14 -2.38 -0.02 1.49 16 38 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.16 3.17 8.06 -2.91 -0.02 3.15 16 40 H 0.14 3.86 5.97 -2.91 -0.02 3.85 16 Total: -1.00 -57.03 329.10 2.09 -54.94 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: 0.47 Total: 17.14 kcal Atomic # 6 Polarization: -32.14 SS G_CDS: 3.96 Total: -28.18 kcal Atomic # 7 Polarization: -83.18 SS G_CDS: -4.29 Total: -87.47 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.27 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -0.08 Total: -0.71 kcal Total: -57.03 2.09 -54.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840787641.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.850 kcal (2) G-P(sol) polarization free energy of solvation -57.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds