Wall clock time and date at job start Tue Mar 31 2020 07:47:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42903 * 109.47257 * 2 1 4 4 C 1.42895 * 114.00617 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47362 * 179.97438 * 4 3 2 6 6 C 1.53004 * 109.46916 * 179.97438 * 5 4 3 7 7 C 1.50705 * 109.47083 * 179.97438 * 6 5 4 8 8 O 1.20835 * 119.99757 * 0.02562 * 7 6 5 9 9 O 1.34254 * 120.00184 * 179.97438 * 7 6 5 10 10 C 1.35922 * 117.00375 * 185.33870 * 9 7 6 11 11 C 1.38817 * 120.02463 * 246.47514 * 10 9 7 12 12 C 1.38194 * 120.08482 * 179.74189 * 11 10 9 13 13 C 1.38153 * 120.12051 * 0.50611 * 12 11 10 14 14 C 1.38899 * 120.04028 * 359.76957 * 13 12 11 15 15 O 1.35753 * 120.04104 * 179.97438 * 14 13 12 16 16 C 1.34826 * 116.99922 * 185.96753 * 15 14 13 17 17 H 1.08001 * 120.00401 * 354.89598 * 16 15 14 18 18 C 1.38658 * 119.99888 * 174.90274 * 16 15 14 19 19 N 1.31551 * 119.99982 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99943 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47268 * 89.99692 * 20 18 16 22 22 H 1.48500 * 109.47126 * 209.99979 * 20 18 16 23 23 H 1.48508 * 109.46902 * 329.99846 * 20 18 16 24 24 C 1.38577 * 120.01655 * 66.74292 * 10 9 7 25 25 H 1.09007 * 109.47095 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47012 * 299.99547 * 1 2 3 27 27 H 1.08998 * 109.47471 * 59.99965 * 1 2 3 28 28 H 1.09003 * 109.47012 * 240.00453 * 2 1 3 29 29 H 1.08998 * 109.47471 * 120.00034 * 2 1 3 30 30 H 1.08999 * 109.47198 * 59.99677 * 4 3 2 31 31 H 1.09000 * 109.47085 * 300.00249 * 4 3 2 32 32 H 1.09006 * 109.47033 * 60.00396 * 5 4 3 33 33 H 1.08993 * 109.47396 * 299.99794 * 5 4 3 34 34 H 1.09001 * 109.46785 * 60.01023 * 6 5 4 35 35 H 1.08993 * 109.47317 * 300.00329 * 6 5 4 36 36 H 1.07998 * 119.96094 * 359.97438 * 11 10 9 37 37 H 1.07996 * 119.94582 * 180.22992 * 12 11 10 38 38 H 1.08004 * 119.98229 * 179.74841 * 13 12 11 39 39 H 0.97000 * 120.00267 * 180.02562 * 19 18 16 40 40 H 1.07996 * 120.06201 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 6 3.8252 2.9385 -0.0012 6 6 5.3505 3.0593 -0.0012 7 6 5.7391 4.5154 -0.0024 8 8 4.8837 5.3689 -0.0027 9 8 7.0355 4.8642 -0.0020 10 6 7.3181 6.1891 0.1095 11 6 7.9055 6.8657 -0.9508 12 6 8.1885 8.2138 -0.8407 13 6 7.8974 8.8901 0.3283 14 6 7.3148 8.2169 1.3945 15 8 7.0292 8.8813 2.5433 16 6 6.5803 8.1458 3.5803 17 1 6.3841 7.0918 3.4500 18 6 6.3703 8.7427 4.8141 19 7 6.6086 10.0267 4.9727 20 14 5.7476 7.7238 6.2507 21 1 6.9023 7.1626 6.9968 22 1 4.9441 8.5839 7.1561 23 1 4.9014 6.6150 5.7411 24 6 7.0250 6.8640 1.2838 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5138 0.8899 30 1 3.8332 0.9768 -0.8908 31 1 3.8340 0.9766 0.8891 32 1 3.4228 3.4223 0.8889 33 1 3.4222 3.4217 -0.8911 34 1 5.7532 2.5755 -0.8910 35 1 5.7532 2.5761 0.8889 36 1 8.1383 6.3387 -1.8643 37 1 8.6421 8.7388 -1.6683 38 1 8.1232 9.9428 0.4134 39 1 6.4621 10.4442 5.8359 40 1 6.5716 6.3383 2.1111 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841342406.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:49 Heat of formation + Delta-G solvation = -135.444994 kcal Electronic energy + Delta-G solvation = -22644.250939 eV Core-core repulsion = 19004.358407 eV Total energy + Delta-G solvation = -3639.892531 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.94341 -38.86887 -38.38258 -37.16273 -35.73549 -34.14525 -32.31356 -31.39101 -29.78674 -28.96809 -27.34581 -25.42244 -23.40569 -23.09238 -21.81632 -21.46479 -20.27606 -18.30974 -17.92651 -17.29048 -16.80553 -16.59310 -16.12403 -15.78712 -15.15282 -14.89848 -14.57463 -14.30684 -14.11574 -13.67275 -13.55241 -13.16704 -13.03761 -12.93287 -12.55786 -12.21539 -11.95674 -11.86477 -11.79334 -11.56113 -11.28158 -11.22519 -11.07358 -11.04726 -10.85839 -10.51053 -10.41724 -10.25592 -9.88048 -9.53608 -8.87856 -8.14567 -7.35555 -6.48726 -4.08061 1.75065 2.20826 2.37919 2.92057 3.12144 3.12510 3.17666 3.50272 3.94308 4.44565 4.63112 4.66655 4.73626 4.74066 4.95752 5.03266 5.03848 5.08892 5.10675 5.16449 5.24470 5.30560 5.42566 5.57895 5.59593 5.77555 5.79705 5.85327 5.99877 6.04585 6.14949 6.29783 6.56074 6.88751 6.93326 7.00382 7.08421 7.13327 7.32443 7.59248 7.94853 8.14798 8.96357 9.62725 10.68826 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.011886 B = 0.003651 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2355.211988 B = 7667.435941 C = 9646.312263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.057 3.943 3 O -0.388 6.388 4 C 0.065 3.935 5 C -0.112 4.112 6 C -0.106 4.106 7 C 0.452 3.548 8 O -0.480 6.480 9 O -0.297 6.297 10 C 0.122 3.878 11 C -0.212 4.212 12 C -0.064 4.064 13 C -0.188 4.188 14 C 0.165 3.835 15 O -0.170 6.170 16 C -0.393 4.393 17 H 0.090 0.910 18 C 0.042 3.958 19 N -0.860 5.860 20 Si 0.941 3.059 21 H -0.272 1.272 22 H -0.276 1.276 23 H -0.267 1.267 24 C -0.235 4.235 25 H 0.070 0.930 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.047 0.953 29 H 0.048 0.952 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.107 0.893 35 H 0.108 0.892 36 H 0.115 0.885 37 H 0.123 0.877 38 H 0.123 0.877 39 H 0.271 0.729 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.205 -18.586 -9.786 21.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.019 4.019 3 O -0.307 6.307 4 C -0.012 4.012 5 C -0.149 4.149 6 C -0.144 4.144 7 C 0.294 3.706 8 O -0.364 6.364 9 O -0.213 6.213 10 C 0.081 3.919 11 C -0.231 4.231 12 C -0.083 4.083 13 C -0.208 4.208 14 C 0.110 3.890 15 O -0.073 6.073 16 C -0.469 4.469 17 H 0.108 0.892 18 C -0.163 4.163 19 N -0.494 5.494 20 Si 0.765 3.235 21 H -0.197 1.197 22 H -0.201 1.201 23 H -0.191 1.191 24 C -0.255 4.255 25 H 0.089 0.911 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.102 0.898 33 H 0.101 0.899 34 H 0.125 0.875 35 H 0.127 0.873 36 H 0.133 0.867 37 H 0.140 0.860 38 H 0.141 0.859 39 H 0.081 0.919 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -4.616 -17.716 -9.527 20.638 hybrid contribution -0.112 -0.762 0.772 1.091 sum -4.728 -18.478 -8.754 20.987 Atomic orbital electron populations 1.21752 0.93725 1.02179 1.03334 1.22459 0.95691 0.83780 1.00006 1.87907 1.21007 1.26401 1.95424 1.22430 0.81474 0.96899 1.00348 1.21320 0.92713 0.95288 1.05596 1.21202 0.97226 0.89853 1.06093 1.23862 0.80773 0.92633 0.73315 1.90752 1.50225 1.52411 1.43000 1.84493 1.28045 1.25790 1.82927 1.18241 0.99365 0.80272 0.93981 1.20424 1.10255 0.94625 0.97784 1.20490 0.98236 0.93028 0.96500 1.20330 1.06695 1.00598 0.93132 1.19117 0.91763 0.89701 0.88378 1.83995 1.71552 1.34785 1.16971 1.21309 1.44600 0.93714 0.87245 0.89226 1.25289 0.96874 0.96310 0.97842 1.70030 1.44628 1.09807 1.24952 0.85714 0.78909 0.79025 0.79849 1.19743 1.20075 1.19139 1.21186 1.10070 0.95678 0.98582 0.91145 0.91729 0.91791 0.93448 0.93386 0.93094 0.92995 0.89753 0.89918 0.87485 0.87340 0.86696 0.85951 0.85869 0.91886 0.85161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 10.28 37.15 0.38 -0.68 16 2 C 0.06 0.45 6.66 37.15 0.25 0.70 16 3 O -0.39 -4.27 10.34 -35.23 -0.36 -4.63 16 4 C 0.07 0.58 5.94 37.16 0.22 0.80 16 5 C -0.11 -1.23 4.87 -26.73 -0.13 -1.36 16 6 C -0.11 -1.10 5.81 -27.88 -0.16 -1.26 16 7 C 0.45 7.37 7.72 36.01 0.28 7.65 16 8 O -0.48 -9.74 15.30 -18.76 -0.29 -10.03 16 9 O -0.30 -5.29 10.04 -23.58 -0.24 -5.53 16 10 C 0.12 2.52 5.34 -39.24 -0.21 2.31 16 11 C -0.21 -3.93 9.98 -39.38 -0.39 -4.32 16 12 C -0.06 -1.17 10.03 -39.63 -0.40 -1.56 16 13 C -0.19 -4.03 9.99 -39.37 -0.39 -4.43 16 14 C 0.16 4.14 6.64 -39.13 -0.26 3.88 16 15 O -0.17 -4.95 9.76 0.05 0.00 -4.95 16 16 C -0.39 -11.26 9.49 30.89 0.29 -10.97 16 17 H 0.09 2.43 5.21 -52.49 -0.27 2.16 16 18 C 0.04 1.16 5.49 -17.52 -0.10 1.07 16 19 N -0.86 -25.39 13.67 55.48 0.76 -24.64 16 20 Si 0.94 20.89 29.55 -169.99 -5.02 15.87 16 21 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 22 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 23 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 24 C -0.24 -5.54 8.30 -39.25 -0.33 -5.87 16 25 H 0.07 0.35 8.14 -51.92 -0.42 -0.07 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.08 1.09 8.10 -51.93 -0.42 0.67 16 33 H 0.08 1.00 8.10 -51.93 -0.42 0.58 16 34 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.11 1.80 8.06 -52.49 -0.42 1.38 16 37 H 0.12 1.74 8.06 -52.49 -0.42 1.32 16 38 H 0.12 2.47 8.06 -52.48 -0.42 2.05 16 39 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 40 H 0.13 3.15 5.64 -52.49 -0.30 2.86 16 LS Contribution 349.35 15.07 5.26 5.26 Total: -1.00 -33.97 349.35 -6.45 -40.43 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -5.62 Total: 2.26 kcal Atomic # 6 Polarization: -13.10 SS G_CDS: -0.95 Total: -14.05 kcal Atomic # 7 Polarization: -25.39 SS G_CDS: 0.76 Total: -24.64 kcal Atomic # 8 Polarization: -24.25 SS G_CDS: -0.89 Total: -25.14 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.97 -6.45 -40.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841342406.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.019 kcal (2) G-P(sol) polarization free energy of solvation -33.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds