Wall clock time and date at job start Tue Mar 31 2020 07:47:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42903 * 109.47257 * 2 1 4 4 C 1.42895 * 114.00617 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47362 * 179.97438 * 4 3 2 6 6 C 1.53004 * 109.46916 * 179.97438 * 5 4 3 7 7 C 1.50705 * 109.47083 * 179.97438 * 6 5 4 8 8 O 1.20835 * 119.99757 * 0.02562 * 7 6 5 9 9 O 1.34254 * 120.00184 * 179.97438 * 7 6 5 10 10 C 1.35922 * 117.00375 * 185.33870 * 9 7 6 11 11 C 1.38817 * 120.02463 * 246.47514 * 10 9 7 12 12 C 1.38194 * 120.08482 * 179.74189 * 11 10 9 13 13 C 1.38153 * 120.12051 * 0.50611 * 12 11 10 14 14 C 1.38899 * 120.04028 * 359.76957 * 13 12 11 15 15 O 1.35753 * 120.04104 * 179.97438 * 14 13 12 16 16 C 1.34826 * 116.99922 * 185.96753 * 15 14 13 17 17 H 1.08001 * 120.00401 * 354.89598 * 16 15 14 18 18 C 1.38658 * 119.99888 * 174.90274 * 16 15 14 19 19 N 1.31551 * 119.99982 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99943 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47268 * 89.99692 * 20 18 16 22 22 H 1.48500 * 109.47126 * 209.99979 * 20 18 16 23 23 H 1.48508 * 109.46902 * 329.99846 * 20 18 16 24 24 C 1.38577 * 120.01655 * 66.74292 * 10 9 7 25 25 H 1.09007 * 109.47095 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47012 * 299.99547 * 1 2 3 27 27 H 1.08998 * 109.47471 * 59.99965 * 1 2 3 28 28 H 1.09003 * 109.47012 * 240.00453 * 2 1 3 29 29 H 1.08998 * 109.47471 * 120.00034 * 2 1 3 30 30 H 1.08999 * 109.47198 * 59.99677 * 4 3 2 31 31 H 1.09000 * 109.47085 * 300.00249 * 4 3 2 32 32 H 1.09006 * 109.47033 * 60.00396 * 5 4 3 33 33 H 1.08993 * 109.47396 * 299.99794 * 5 4 3 34 34 H 1.09001 * 109.46785 * 60.01023 * 6 5 4 35 35 H 1.08993 * 109.47317 * 300.00329 * 6 5 4 36 36 H 1.07998 * 119.96094 * 359.97438 * 11 10 9 37 37 H 1.07996 * 119.94582 * 180.22992 * 12 11 10 38 38 H 1.08004 * 119.98229 * 179.74841 * 13 12 11 39 39 H 0.97000 * 120.00267 * 180.02562 * 19 18 16 40 40 H 1.07996 * 120.06201 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 6 3.8252 2.9385 -0.0012 6 6 5.3505 3.0593 -0.0012 7 6 5.7391 4.5154 -0.0024 8 8 4.8837 5.3689 -0.0027 9 8 7.0355 4.8642 -0.0020 10 6 7.3181 6.1891 0.1095 11 6 7.9055 6.8657 -0.9508 12 6 8.1885 8.2138 -0.8407 13 6 7.8974 8.8901 0.3283 14 6 7.3148 8.2169 1.3945 15 8 7.0292 8.8813 2.5433 16 6 6.5803 8.1458 3.5803 17 1 6.3841 7.0918 3.4500 18 6 6.3703 8.7427 4.8141 19 7 6.6086 10.0267 4.9727 20 14 5.7476 7.7238 6.2507 21 1 6.9023 7.1626 6.9968 22 1 4.9441 8.5839 7.1561 23 1 4.9014 6.6150 5.7411 24 6 7.0250 6.8640 1.2838 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5138 0.8899 30 1 3.8332 0.9768 -0.8908 31 1 3.8340 0.9766 0.8891 32 1 3.4228 3.4223 0.8889 33 1 3.4222 3.4217 -0.8911 34 1 5.7532 2.5755 -0.8910 35 1 5.7532 2.5761 0.8889 36 1 8.1383 6.3387 -1.8643 37 1 8.6421 8.7388 -1.6683 38 1 8.1232 9.9428 0.4134 39 1 6.4621 10.4442 5.8359 40 1 6.5716 6.3383 2.1111 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841342406.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:48 Heat of formation + Delta-G solvation = -156.849433 kcal Electronic energy + Delta-G solvation = -22645.179105 eV Core-core repulsion = 19004.358407 eV Total energy + Delta-G solvation = -3640.820698 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.39466 -40.61172 -39.19811 -38.66860 -37.38505 -35.04851 -34.36413 -32.07854 -31.37537 -30.68714 -28.35388 -27.42172 -24.71005 -23.67545 -23.43147 -22.74447 -21.57666 -20.14976 -19.56616 -18.54154 -17.88338 -17.71362 -17.21373 -17.11731 -16.88362 -16.21858 -16.06956 -15.66179 -15.37516 -15.33515 -14.93876 -14.59448 -14.40781 -13.89224 -13.67601 -13.64379 -13.25354 -13.01142 -12.89113 -12.76083 -12.57285 -12.50733 -12.49488 -12.20758 -11.99178 -11.91322 -11.83248 -11.78437 -11.46012 -10.87519 -10.52866 -9.80119 -9.17235 -8.55200 -6.24706 0.13028 0.53272 1.06268 1.28920 1.38187 1.46570 1.67143 2.11523 2.68503 2.78409 3.03718 3.35524 3.52216 3.90376 3.96234 4.00219 4.13303 4.18267 4.20731 4.30401 4.37491 4.43733 4.46868 4.51646 4.52420 4.57162 4.80050 4.87451 4.93625 4.99012 4.99470 5.06149 5.15359 5.27260 5.33323 5.43252 5.50499 5.54065 5.91884 5.99111 6.30979 6.72301 6.88455 7.63915 8.67304 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.011886 B = 0.003651 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2355.211988 B = 7667.435941 C = 9646.312263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.050 3.950 3 O -0.421 6.421 4 C 0.067 3.933 5 C -0.109 4.109 6 C -0.092 4.092 7 C 0.448 3.552 8 O -0.528 6.528 9 O -0.291 6.291 10 C 0.114 3.886 11 C -0.191 4.191 12 C -0.047 4.047 13 C -0.197 4.197 14 C 0.126 3.874 15 O -0.221 6.221 16 C -0.419 4.419 17 H 0.091 0.909 18 C -0.016 4.016 19 N -0.913 5.913 20 Si 1.016 2.984 21 H -0.256 1.256 22 H -0.265 1.265 23 H -0.261 1.261 24 C -0.253 4.253 25 H 0.092 0.908 26 H 0.052 0.948 27 H 0.056 0.944 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.053 0.947 33 H 0.066 0.934 34 H 0.150 0.850 35 H 0.136 0.864 36 H 0.160 0.840 37 H 0.177 0.823 38 H 0.130 0.870 39 H 0.276 0.724 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.393 -21.736 -11.808 24.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.025 4.025 3 O -0.342 6.342 4 C -0.009 4.009 5 C -0.147 4.147 6 C -0.129 4.129 7 C 0.293 3.707 8 O -0.415 6.415 9 O -0.206 6.206 10 C 0.073 3.927 11 C -0.210 4.210 12 C -0.065 4.065 13 C -0.217 4.217 14 C 0.075 3.925 15 O -0.127 6.127 16 C -0.495 4.495 17 H 0.108 0.892 18 C -0.215 4.215 19 N -0.551 5.551 20 Si 0.834 3.166 21 H -0.181 1.181 22 H -0.189 1.189 23 H -0.185 1.185 24 C -0.273 4.273 25 H 0.111 0.889 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.095 0.905 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.168 0.832 35 H 0.154 0.846 36 H 0.177 0.823 37 H 0.194 0.806 38 H 0.148 0.852 39 H 0.085 0.915 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -3.782 -20.908 -11.602 24.208 hybrid contribution -0.307 0.106 1.057 1.106 sum -4.089 -20.801 -10.545 23.677 Atomic orbital electron populations 1.21796 0.93559 1.03351 1.02392 1.22664 0.95971 0.82635 1.01271 1.87869 1.22183 1.28433 1.95710 1.22465 0.80915 0.95120 1.02394 1.21265 0.93209 0.96883 1.03361 1.21394 0.96640 0.85551 1.09324 1.25158 0.79489 0.94685 0.71325 1.90746 1.51143 1.54258 1.45330 1.84527 1.29176 1.24017 1.82913 1.18456 0.99148 0.81610 0.93501 1.21052 1.06875 0.94843 0.98189 1.21093 0.96069 0.93016 0.96280 1.20710 1.06285 1.01281 0.93381 1.19730 0.93417 0.90875 0.88453 1.83953 1.74291 1.36112 1.18368 1.21689 1.45566 0.94068 0.88138 0.89208 1.26555 0.96744 0.97667 1.00509 1.70154 1.47038 1.11832 1.26046 0.84648 0.78802 0.77372 0.75758 1.18075 1.18888 1.18473 1.21170 1.11055 0.95516 0.99585 0.88923 0.92885 0.92519 0.91836 0.92325 0.90465 0.91338 0.92794 0.91566 0.83228 0.84585 0.82285 0.80608 0.85198 0.91486 0.87297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 10.28 71.98 0.74 -1.23 16 2 C 0.05 0.70 6.66 71.98 0.48 1.18 16 3 O -0.42 -8.74 10.34 -148.98 -1.54 -10.28 16 4 C 0.07 1.03 5.94 71.98 0.43 1.46 16 5 C -0.11 -2.29 4.87 30.59 0.15 -2.14 16 6 C -0.09 -1.64 5.81 29.85 0.17 -1.47 16 7 C 0.45 14.10 7.72 71.24 0.55 14.65 16 8 O -0.53 -21.81 15.30 21.94 0.34 -21.48 16 9 O -0.29 -9.82 10.04 4.66 0.05 -9.77 16 10 C 0.11 4.58 5.34 22.49 0.12 4.70 16 11 C -0.19 -6.38 9.98 22.40 0.22 -6.15 16 12 C -0.05 -1.54 10.03 22.24 0.22 -1.32 16 13 C -0.20 -8.43 9.99 22.41 0.22 -8.21 16 14 C 0.13 6.63 6.64 22.56 0.15 6.78 16 15 O -0.22 -13.78 9.76 -22.73 -0.22 -14.01 16 16 C -0.42 -25.60 9.49 67.92 0.64 -24.96 16 17 H 0.09 5.24 5.21 -2.91 -0.02 5.22 16 18 C -0.02 -0.95 5.49 84.84 0.47 -0.49 16 19 N -0.91 -56.82 13.67 21.61 0.30 -56.52 16 20 Si 1.02 44.31 29.55 68.60 2.03 46.34 16 21 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 22 H -0.26 -10.92 7.11 99.48 0.71 -10.22 16 23 H -0.26 -10.91 7.11 99.48 0.71 -10.21 16 24 C -0.25 -12.36 8.30 22.49 0.19 -12.18 16 25 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 26 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.05 1.44 8.10 -2.38 -0.02 1.42 16 33 H 0.07 1.58 8.10 -2.39 -0.02 1.56 16 34 H 0.15 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.14 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.16 3.99 8.06 -2.91 -0.02 3.97 16 37 H 0.18 3.95 8.06 -2.91 -0.02 3.93 16 38 H 0.13 5.26 8.06 -2.91 -0.02 5.24 16 39 H 0.28 15.61 8.31 -92.71 -0.77 14.83 16 40 H 0.11 5.65 5.64 -2.91 -0.02 5.63 16 Total: -1.00 -81.81 349.35 6.73 -75.08 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: 1.03 Total: 20.01 kcal Atomic # 6 Polarization: -34.13 SS G_CDS: 4.76 Total: -29.37 kcal Atomic # 7 Polarization: -56.82 SS G_CDS: 0.30 Total: -56.52 kcal Atomic # 8 Polarization: -54.15 SS G_CDS: -1.38 Total: -55.53 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -81.81 6.73 -75.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841342406.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.774 kcal (2) G-P(sol) polarization free energy of solvation -81.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds