Wall clock time and date at job start Tue Mar 31 2020 07:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47152 * 2 1 4 4 O 1.42905 * 109.47033 * 120.00192 * 2 1 3 5 5 C 1.42903 * 113.99766 * 149.99918 * 4 2 1 6 6 C 1.53004 * 109.46751 * 179.97438 * 5 4 2 7 7 C 1.50705 * 109.47083 * 179.97438 * 6 5 4 8 8 O 1.20835 * 119.99757 * 0.02562 * 7 6 5 9 9 O 1.34254 * 120.00184 * 179.97438 * 7 6 5 10 10 C 1.35922 * 117.00375 * 185.33870 * 9 7 6 11 11 C 1.38817 * 120.02463 * 246.47514 * 10 9 7 12 12 C 1.38194 * 120.08482 * 179.74189 * 11 10 9 13 13 C 1.38153 * 120.12051 * 0.50611 * 12 11 10 14 14 C 1.38899 * 120.04028 * 359.76957 * 13 12 11 15 15 O 1.35753 * 120.04104 * 179.97438 * 14 13 12 16 16 C 1.34826 * 116.99922 * 185.96753 * 15 14 13 17 17 H 1.08001 * 120.00401 * 354.89598 * 16 15 14 18 18 C 1.38658 * 119.99888 * 174.90274 * 16 15 14 19 19 N 1.31551 * 119.99982 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99943 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47163 * 59.99845 * 20 18 16 22 22 H 1.48501 * 109.46937 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.46788 * 299.99763 * 20 18 16 24 24 C 1.38577 * 120.01655 * 66.74292 * 10 9 7 25 25 H 1.09006 * 109.46879 * 299.99765 * 1 2 3 26 26 H 1.08992 * 109.46994 * 59.99941 * 1 2 3 27 27 H 1.09002 * 109.47202 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47082 * 239.99915 * 2 1 3 29 29 H 1.09007 * 109.47083 * 179.97438 * 3 2 1 30 30 H 1.08992 * 109.47220 * 299.99921 * 3 2 1 31 31 H 1.09006 * 109.47036 * 60.00331 * 3 2 1 32 32 H 1.09006 * 109.47167 * 60.00348 * 5 4 2 33 33 H 1.08993 * 109.47427 * 299.99645 * 5 4 2 34 34 H 1.09001 * 109.46785 * 60.00960 * 6 5 4 35 35 H 1.08993 * 109.47317 * 300.00266 * 6 5 4 36 36 H 1.07998 * 119.96094 * 359.97438 * 11 10 9 37 37 H 1.07996 * 119.94582 * 180.22992 * 12 11 10 38 38 H 1.08004 * 119.98229 * 179.74841 * 13 12 11 39 39 H 0.97000 * 120.00267 * 180.02562 * 19 18 16 40 40 H 1.07996 * 120.06201 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 3.2660 -1.3246 0.9886 6 6 3.6760 -2.0082 2.2945 7 6 5.0041 -2.6952 2.1065 8 8 5.5653 -2.6428 1.0376 9 8 5.5642 -3.3643 3.1267 10 6 6.8114 -3.8657 2.9253 11 6 7.0110 -5.2390 2.8924 12 6 8.2777 -5.7501 2.6824 13 6 9.3508 -4.8963 2.5150 14 6 9.1579 -3.5213 2.5527 15 8 10.2124 -2.6823 2.3887 16 6 9.9790 -1.3653 2.5590 17 1 8.9729 -1.0131 2.7327 18 6 11.0308 -0.4630 2.5111 19 7 12.2562 -0.8919 2.2990 20 14 10.7074 1.3617 2.7464 21 1 10.1006 1.5886 4.0826 22 1 11.9880 2.1076 2.6517 23 1 9.7766 1.8393 1.6924 24 6 7.8854 -3.0061 2.7582 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6767 1.9563 0.8901 32 1 4.0200 -0.5874 0.7125 33 1 3.1809 -2.0707 0.1987 34 1 2.9221 -2.7453 2.5709 35 1 3.7612 -1.2618 3.0842 36 1 6.1748 -5.9090 3.0273 37 1 8.4298 -6.8189 2.6535 38 1 10.3405 -5.2982 2.3550 39 1 12.9921 -0.2607 2.2659 40 1 7.7327 -1.9374 2.7874 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841342527.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:08 Heat of formation + Delta-G solvation = -132.857567 kcal Electronic energy + Delta-G solvation = -22948.655386 eV Core-core repulsion = 19308.875054 eV Total energy + Delta-G solvation = -3639.780332 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -40.99925 -38.96701 -38.55873 -37.13238 -35.75689 -33.63244 -32.33363 -31.28774 -29.63583 -28.92619 -27.51950 -25.55759 -24.79248 -22.32714 -21.63840 -21.58745 -20.33507 -18.35645 -18.02095 -17.36916 -16.57118 -16.32975 -15.96241 -15.48807 -15.16984 -15.12042 -14.42698 -14.31310 -13.87256 -13.69917 -13.57304 -13.17029 -13.03534 -12.73105 -12.58997 -12.50566 -12.16796 -11.90150 -11.74114 -11.56860 -11.43796 -11.28723 -11.08380 -10.93818 -10.86506 -10.54723 -10.47550 -10.30427 -9.80187 -9.56068 -8.89255 -8.17127 -7.37592 -6.50298 -4.09866 1.70521 2.18739 2.31291 2.77389 3.10740 3.11932 3.14474 3.68116 3.92691 4.43536 4.52026 4.66860 4.73726 4.82300 4.91421 5.00888 5.03781 5.18791 5.26021 5.30882 5.39484 5.49832 5.55594 5.56451 5.59181 5.65232 5.75680 5.87561 5.95946 5.97749 6.12697 6.26042 6.53931 6.85249 6.95740 6.97535 7.06202 7.11158 7.30176 7.56037 7.92957 8.09214 8.94557 9.60762 10.67109 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.012074 B = 0.004050 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2318.557327 B = 6911.758345 C = 8920.706196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.082 3.918 3 C -0.178 4.178 4 O -0.384 6.384 5 C 0.073 3.927 6 C -0.109 4.109 7 C 0.458 3.542 8 O -0.484 6.484 9 O -0.293 6.293 10 C 0.121 3.879 11 C -0.211 4.211 12 C -0.064 4.064 13 C -0.188 4.188 14 C 0.165 3.835 15 O -0.170 6.170 16 C -0.394 4.394 17 H 0.090 0.910 18 C 0.042 3.958 19 N -0.860 5.860 20 Si 0.940 3.060 21 H -0.269 1.269 22 H -0.276 1.276 23 H -0.269 1.269 24 C -0.235 4.235 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.114 0.886 35 H 0.115 0.885 36 H 0.116 0.884 37 H 0.123 0.877 38 H 0.124 0.876 39 H 0.272 0.728 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.499 0.027 -1.772 19.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.024 3.976 3 C -0.235 4.235 4 O -0.304 6.304 5 C -0.004 4.004 6 C -0.147 4.147 7 C 0.301 3.699 8 O -0.369 6.369 9 O -0.209 6.209 10 C 0.081 3.919 11 C -0.230 4.230 12 C -0.082 4.082 13 C -0.207 4.207 14 C 0.110 3.890 15 O -0.073 6.073 16 C -0.470 4.470 17 H 0.107 0.893 18 C -0.163 4.163 19 N -0.494 5.494 20 Si 0.764 3.236 21 H -0.194 1.194 22 H -0.201 1.201 23 H -0.194 1.194 24 C -0.255 4.255 25 H 0.083 0.917 26 H 0.088 0.912 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.132 0.868 35 H 0.134 0.866 36 H 0.134 0.866 37 H 0.141 0.859 38 H 0.142 0.858 39 H 0.082 0.918 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -18.918 0.106 -2.030 19.027 hybrid contribution 0.048 0.994 -0.113 1.002 sum -18.870 1.100 -2.143 19.023 Atomic orbital electron populations 1.21864 0.93519 1.02709 1.02537 1.22090 0.94900 0.92537 0.88034 1.22319 1.01982 0.96622 1.02583 1.87830 1.36304 1.70136 1.36097 1.22201 0.85968 0.96372 0.95844 1.21080 0.91866 1.01215 1.00498 1.23643 0.87354 0.76632 0.82313 1.90747 1.63199 1.56272 1.26691 1.84492 1.30159 1.64753 1.41454 1.18242 0.80777 0.91843 1.01053 1.20429 0.98006 0.92437 1.12133 1.20492 0.91370 0.98609 0.97759 1.20337 0.99628 0.90527 1.10217 1.19112 0.87055 0.90714 0.92080 1.83995 1.30025 1.17638 1.75598 1.21262 0.95437 0.78794 1.51488 0.89277 1.25284 0.94307 1.00317 0.96354 1.70020 0.99025 1.35703 1.44639 0.85791 0.78171 0.80277 0.79314 1.19365 1.20079 1.19426 1.21184 0.92407 1.00339 1.11570 0.91746 0.91230 0.91973 0.91981 0.92175 0.91608 0.91704 0.91964 0.92090 0.86783 0.86648 0.86638 0.85918 0.85846 0.91816 0.85156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.56 37.16 0.36 -0.71 16 2 C 0.08 0.74 3.34 -26.73 -0.09 0.65 16 3 C -0.18 -1.51 9.53 37.16 0.35 -1.15 16 4 O -0.38 -4.24 9.99 -35.23 -0.35 -4.60 16 5 C 0.07 0.84 5.04 37.16 0.19 1.03 16 6 C -0.11 -1.24 6.18 -27.88 -0.17 -1.42 16 7 C 0.46 7.47 7.72 36.01 0.28 7.75 16 8 O -0.48 -9.58 15.30 -18.76 -0.29 -9.87 16 9 O -0.29 -5.23 10.04 -23.58 -0.24 -5.47 16 10 C 0.12 2.49 5.34 -39.24 -0.21 2.28 16 11 C -0.21 -3.88 9.98 -39.38 -0.39 -4.27 16 12 C -0.06 -1.15 10.03 -39.63 -0.40 -1.55 16 13 C -0.19 -3.98 9.99 -39.37 -0.39 -4.38 16 14 C 0.16 4.10 6.64 -39.13 -0.26 3.84 16 15 O -0.17 -4.91 9.76 0.05 0.00 -4.90 16 16 C -0.39 -11.22 9.49 30.89 0.29 -10.93 16 17 H 0.09 2.39 5.21 -52.49 -0.27 2.12 16 18 C 0.04 1.17 5.49 -17.52 -0.10 1.08 16 19 N -0.86 -25.24 13.67 55.48 0.76 -24.48 16 20 Si 0.94 20.74 29.55 -169.99 -5.02 15.72 16 21 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 22 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 23 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 24 C -0.24 -5.49 8.30 -39.25 -0.33 -5.81 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.53 7.79 -51.93 -0.40 0.13 16 29 H 0.06 0.57 7.87 -51.93 -0.41 0.16 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.78 7.83 -51.93 -0.41 0.37 16 33 H 0.06 0.70 8.04 -51.93 -0.42 0.28 16 34 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.12 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.12 1.79 8.06 -52.49 -0.42 1.37 16 37 H 0.12 1.73 8.06 -52.49 -0.42 1.30 16 38 H 0.12 2.45 8.06 -52.48 -0.42 2.03 16 39 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 40 H 0.13 3.12 5.64 -52.49 -0.30 2.83 16 LS Contribution 348.12 15.07 5.25 5.25 Total: -1.00 -32.70 348.12 -6.33 -39.04 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -5.57 Total: 2.92 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: -0.87 Total: -13.60 kcal Atomic # 7 Polarization: -25.24 SS G_CDS: 0.76 Total: -24.48 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: -0.88 Total: -24.84 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.70 -6.33 -39.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841342527.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.823 kcal (2) G-P(sol) polarization free energy of solvation -32.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds