Wall clock time and date at job start Tue Mar 31 2020 07:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47152 * 2 1 4 4 O 1.42905 * 109.47033 * 120.00192 * 2 1 3 5 5 C 1.42903 * 113.99766 * 149.99918 * 4 2 1 6 6 C 1.53004 * 109.46751 * 179.97438 * 5 4 2 7 7 C 1.50705 * 109.47083 * 179.97438 * 6 5 4 8 8 O 1.20835 * 119.99757 * 0.02562 * 7 6 5 9 9 O 1.34254 * 120.00184 * 179.97438 * 7 6 5 10 10 C 1.35922 * 117.00375 * 185.33870 * 9 7 6 11 11 C 1.38817 * 120.02463 * 246.47514 * 10 9 7 12 12 C 1.38194 * 120.08482 * 179.74189 * 11 10 9 13 13 C 1.38153 * 120.12051 * 0.50611 * 12 11 10 14 14 C 1.38899 * 120.04028 * 359.76957 * 13 12 11 15 15 O 1.35753 * 120.04104 * 179.97438 * 14 13 12 16 16 C 1.34826 * 116.99922 * 185.96753 * 15 14 13 17 17 H 1.08001 * 120.00401 * 354.89598 * 16 15 14 18 18 C 1.38658 * 119.99888 * 174.90274 * 16 15 14 19 19 N 1.31551 * 119.99982 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99943 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47163 * 59.99845 * 20 18 16 22 22 H 1.48501 * 109.46937 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.46788 * 299.99763 * 20 18 16 24 24 C 1.38577 * 120.01655 * 66.74292 * 10 9 7 25 25 H 1.09006 * 109.46879 * 299.99765 * 1 2 3 26 26 H 1.08992 * 109.46994 * 59.99941 * 1 2 3 27 27 H 1.09002 * 109.47202 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47082 * 239.99915 * 2 1 3 29 29 H 1.09007 * 109.47083 * 179.97438 * 3 2 1 30 30 H 1.08992 * 109.47220 * 299.99921 * 3 2 1 31 31 H 1.09006 * 109.47036 * 60.00331 * 3 2 1 32 32 H 1.09006 * 109.47167 * 60.00348 * 5 4 2 33 33 H 1.08993 * 109.47427 * 299.99645 * 5 4 2 34 34 H 1.09001 * 109.46785 * 60.00960 * 6 5 4 35 35 H 1.08993 * 109.47317 * 300.00266 * 6 5 4 36 36 H 1.07998 * 119.96094 * 359.97438 * 11 10 9 37 37 H 1.07996 * 119.94582 * 180.22992 * 12 11 10 38 38 H 1.08004 * 119.98229 * 179.74841 * 13 12 11 39 39 H 0.97000 * 120.00267 * 180.02562 * 19 18 16 40 40 H 1.07996 * 120.06201 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 3.2660 -1.3246 0.9886 6 6 3.6760 -2.0082 2.2945 7 6 5.0041 -2.6952 2.1065 8 8 5.5653 -2.6428 1.0376 9 8 5.5642 -3.3643 3.1267 10 6 6.8114 -3.8657 2.9253 11 6 7.0110 -5.2390 2.8924 12 6 8.2777 -5.7501 2.6824 13 6 9.3508 -4.8963 2.5150 14 6 9.1579 -3.5213 2.5527 15 8 10.2124 -2.6823 2.3887 16 6 9.9790 -1.3653 2.5590 17 1 8.9729 -1.0131 2.7327 18 6 11.0308 -0.4630 2.5111 19 7 12.2562 -0.8919 2.2990 20 14 10.7074 1.3617 2.7464 21 1 10.1006 1.5886 4.0826 22 1 11.9880 2.1076 2.6517 23 1 9.7766 1.8393 1.6924 24 6 7.8854 -3.0061 2.7582 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6767 1.9563 0.8901 32 1 4.0200 -0.5874 0.7125 33 1 3.1809 -2.0707 0.1987 34 1 2.9221 -2.7453 2.5709 35 1 3.7612 -1.2618 3.0842 36 1 6.1748 -5.9090 3.0273 37 1 8.4298 -6.8189 2.6535 38 1 10.3405 -5.2982 2.3550 39 1 12.9921 -0.2607 2.2659 40 1 7.7327 -1.9374 2.7874 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841342527.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:06 Heat of formation + Delta-G solvation = -152.587501 kcal Electronic energy + Delta-G solvation = -22949.510941 eV Core-core repulsion = 19308.875054 eV Total energy + Delta-G solvation = -3640.635886 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.45038 -40.63363 -39.53589 -38.66213 -37.39853 -34.47023 -34.35599 -32.29002 -31.22290 -30.62031 -28.14132 -27.52234 -26.05339 -23.77441 -23.27740 -22.32530 -21.74123 -20.15733 -19.61851 -18.65540 -17.90747 -17.60829 -17.25249 -16.89481 -16.67949 -16.13296 -15.99178 -15.80208 -15.63255 -15.02649 -14.81401 -14.61462 -14.38824 -13.92391 -13.71606 -13.43700 -13.31033 -13.10666 -13.00114 -12.84094 -12.78547 -12.54594 -12.46195 -12.21820 -12.19398 -12.01467 -11.84958 -11.64570 -11.48413 -10.87571 -10.62755 -9.81134 -9.17618 -8.55004 -6.24653 0.10535 0.53080 0.98184 1.28861 1.38728 1.45295 1.51652 2.11424 2.64764 2.78901 3.03756 3.35570 3.47930 3.84204 3.88169 3.96662 4.05559 4.12200 4.17662 4.27411 4.29725 4.33649 4.50510 4.58008 4.66381 4.74717 4.77781 4.88462 4.90683 4.92622 4.95669 4.99142 5.26555 5.31146 5.33002 5.41857 5.49164 5.52430 5.91683 5.96870 6.15677 6.65505 6.88459 7.63846 8.67164 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.012074 B = 0.004050 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2318.557327 B = 6911.758345 C = 8920.706196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.071 3.929 3 C -0.177 4.177 4 O -0.390 6.390 5 C 0.077 3.923 6 C -0.097 4.097 7 C 0.458 3.542 8 O -0.524 6.524 9 O -0.289 6.289 10 C 0.113 3.887 11 C -0.190 4.190 12 C -0.046 4.046 13 C -0.196 4.196 14 C 0.127 3.873 15 O -0.220 6.220 16 C -0.420 4.420 17 H 0.091 0.909 18 C -0.015 4.015 19 N -0.913 5.913 20 Si 1.014 2.986 21 H -0.256 1.256 22 H -0.263 1.263 23 H -0.262 1.262 24 C -0.253 4.253 25 H 0.063 0.937 26 H 0.087 0.913 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.044 0.956 30 H 0.082 0.918 31 H 0.064 0.936 32 H 0.045 0.955 33 H 0.060 0.940 34 H 0.147 0.853 35 H 0.133 0.867 36 H 0.159 0.841 37 H 0.177 0.823 38 H 0.131 0.869 39 H 0.276 0.724 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.574 -0.881 -1.284 22.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.014 3.986 3 C -0.234 4.234 4 O -0.310 6.310 5 C 0.000 4.000 6 C -0.134 4.134 7 C 0.303 3.697 8 O -0.411 6.411 9 O -0.204 6.204 10 C 0.072 3.928 11 C -0.208 4.208 12 C -0.064 4.064 13 C -0.215 4.215 14 C 0.076 3.924 15 O -0.127 6.127 16 C -0.496 4.496 17 H 0.108 0.892 18 C -0.214 4.214 19 N -0.550 5.550 20 Si 0.832 3.168 21 H -0.180 1.180 22 H -0.187 1.187 23 H -0.186 1.186 24 C -0.272 4.272 25 H 0.082 0.918 26 H 0.106 0.894 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.063 0.937 30 H 0.101 0.899 31 H 0.083 0.917 32 H 0.064 0.936 33 H 0.078 0.922 34 H 0.165 0.835 35 H 0.151 0.849 36 H 0.177 0.823 37 H 0.194 0.806 38 H 0.148 0.852 39 H 0.085 0.915 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -22.050 -0.840 -1.528 22.119 hybrid contribution 0.752 1.013 -0.272 1.290 sum -21.298 0.173 -1.800 21.374 Atomic orbital electron populations 1.21860 0.91847 1.03074 1.03408 1.22345 0.96209 0.92525 0.87477 1.22320 1.01005 0.96634 1.03448 1.87813 1.35651 1.70282 1.37224 1.22083 0.86047 0.95989 0.95925 1.21178 0.89454 1.01883 1.00869 1.24620 0.88261 0.75520 0.81254 1.90741 1.64512 1.57608 1.28227 1.84518 1.28743 1.65043 1.42089 1.18447 0.81161 0.92655 1.00498 1.21051 0.99563 0.91886 1.08342 1.21090 0.89874 1.00737 0.94697 1.20719 1.01460 0.89443 1.09926 1.19715 0.87083 0.91957 0.93634 1.83954 1.32019 1.18058 1.78631 1.21655 0.95988 0.79493 1.52434 0.89162 1.26537 0.93789 1.05441 0.95619 1.70145 1.00156 1.37644 1.47063 0.84734 0.78646 0.73567 0.79825 1.17992 1.18733 1.18619 1.21167 0.93161 0.99960 1.12952 0.91817 0.89434 0.91855 0.91792 0.93682 0.89877 0.91738 0.93630 0.92206 0.83545 0.84928 0.82300 0.80589 0.85154 0.91478 0.87211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 9.56 71.98 0.69 -1.08 16 2 C 0.07 1.19 3.34 30.59 0.10 1.29 16 3 C -0.18 -2.81 9.53 71.98 0.69 -2.12 16 4 O -0.39 -7.98 9.99 -148.98 -1.49 -9.46 16 5 C 0.08 1.69 5.04 71.98 0.36 2.05 16 6 C -0.10 -2.00 6.18 29.85 0.18 -1.81 16 7 C 0.46 14.42 7.72 71.24 0.55 14.97 16 8 O -0.52 -20.81 15.30 21.94 0.34 -20.47 16 9 O -0.29 -9.79 10.04 4.66 0.05 -9.74 16 10 C 0.11 4.50 5.34 22.49 0.12 4.62 16 11 C -0.19 -6.25 9.98 22.40 0.22 -6.03 16 12 C -0.05 -1.49 10.03 22.24 0.22 -1.27 16 13 C -0.20 -8.26 9.99 22.41 0.22 -8.03 16 14 C 0.13 6.58 6.64 22.56 0.15 6.73 16 15 O -0.22 -13.60 9.76 -22.73 -0.22 -13.82 16 16 C -0.42 -25.41 9.49 67.92 0.64 -24.77 16 17 H 0.09 5.19 5.21 -2.91 -0.02 5.18 16 18 C -0.02 -0.88 5.49 84.84 0.47 -0.42 16 19 N -0.91 -56.36 13.67 21.61 0.30 -56.06 16 20 Si 1.01 43.86 29.55 68.60 2.03 45.89 16 21 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 22 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 23 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 24 C -0.25 -12.15 8.30 22.49 0.19 -11.96 16 25 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 26 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.06 1.03 7.79 -2.39 -0.02 1.01 16 29 H 0.04 0.84 7.87 -2.38 -0.02 0.82 16 30 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 32 H 0.05 1.15 7.83 -2.38 -0.02 1.13 16 33 H 0.06 1.32 8.04 -2.39 -0.02 1.30 16 34 H 0.15 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.13 2.36 8.14 -2.39 -0.02 2.34 16 36 H 0.16 3.95 8.06 -2.91 -0.02 3.92 16 37 H 0.18 3.87 8.06 -2.91 -0.02 3.84 16 38 H 0.13 5.19 8.06 -2.91 -0.02 5.17 16 39 H 0.28 15.53 8.31 -92.71 -0.77 14.76 16 40 H 0.11 5.60 5.64 -2.91 -0.02 5.59 16 Total: -1.00 -76.74 348.12 6.84 -69.90 By element: Atomic # 1 Polarization: 20.57 SS G_CDS: 1.04 Total: 21.60 kcal Atomic # 6 Polarization: -32.64 SS G_CDS: 4.81 Total: -27.83 kcal Atomic # 7 Polarization: -56.36 SS G_CDS: 0.30 Total: -56.06 kcal Atomic # 8 Polarization: -52.17 SS G_CDS: -1.33 Total: -53.50 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -76.74 6.84 -69.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841342527.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.690 kcal (2) G-P(sol) polarization free energy of solvation -76.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds