Wall clock time and date at job start Tue Mar 31 2020 06:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46959 * 2 1 4 4 C 1.42901 * 113.99724 * 184.96903 * 3 2 1 5 5 H 1.08998 * 109.46952 * 34.35240 * 4 3 2 6 6 C 1.52999 * 109.46802 * 154.35274 * 4 3 2 7 7 C 1.52990 * 109.47308 * 295.68942 * 6 4 3 8 8 C 1.50699 * 109.47249 * 274.35380 * 4 3 2 9 9 O 1.20832 * 119.99924 * 0.02562 * 8 4 3 10 10 O 1.34270 * 120.00013 * 179.97438 * 8 4 3 11 11 C 1.35922 * 116.99504 * 175.02762 * 10 8 4 12 12 C 1.38832 * 120.01993 * 255.63965 * 11 10 8 13 13 C 1.38182 * 120.08255 * 180.02562 * 12 11 10 14 14 C 1.38159 * 120.12241 * 359.78451 * 13 12 11 15 15 C 1.38899 * 120.04271 * 0.46942 * 14 13 12 16 16 O 1.35744 * 120.04202 * 179.78553 * 15 14 13 17 17 C 1.34833 * 116.99756 * 174.34551 * 16 15 14 18 18 H 1.07997 * 120.00142 * 5.08270 * 17 16 15 19 19 C 1.38656 * 119.99768 * 185.08434 * 17 16 15 20 20 N 1.31557 * 120.00008 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99919 * 179.97438 * 19 17 16 22 22 H 1.48491 * 109.46983 * 89.99914 * 21 19 17 23 23 H 1.48502 * 109.46976 * 210.00320 * 21 19 17 24 24 H 1.48501 * 109.47165 * 330.00076 * 21 19 17 25 25 C 1.38570 * 120.02141 * 75.66673 * 11 10 8 26 26 H 1.09002 * 109.47230 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.46955 * 299.99696 * 1 2 3 28 28 H 1.09001 * 109.47392 * 59.99408 * 1 2 3 29 29 H 1.09001 * 109.46956 * 240.00767 * 2 1 3 30 30 H 1.08996 * 109.47381 * 120.00106 * 2 1 3 31 31 H 1.08996 * 109.47125 * 55.69709 * 6 4 3 32 32 H 1.09007 * 109.46853 * 175.68953 * 6 4 3 33 33 H 1.09007 * 109.47424 * 185.03284 * 7 6 4 34 34 H 1.08999 * 109.47576 * 305.03444 * 7 6 4 35 35 H 1.09001 * 109.47115 * 65.03636 * 7 6 4 36 36 H 1.07993 * 119.95727 * 0.02562 * 12 11 10 37 37 H 1.07999 * 119.94075 * 180.02562 * 13 12 11 38 38 H 1.07997 * 119.98084 * 180.25725 * 14 13 12 39 39 H 0.96996 * 119.99676 * 180.02562 * 20 19 17 40 40 H 1.07996 * 120.06081 * 359.97438 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4262 1.4618 -0.1131 5 1 3.8056 0.6623 -0.7494 6 6 3.7811 2.8163 -0.7296 7 6 3.2397 2.8837 -2.1589 8 6 4.0494 1.3536 1.2547 9 8 3.3495 1.1944 2.2267 10 8 5.3826 1.4332 1.3933 11 6 5.8723 1.4326 2.6612 12 6 6.3277 2.6141 3.2305 13 6 6.8262 2.6149 4.5192 14 6 6.8690 1.4411 5.2468 15 6 6.4197 0.2551 4.6804 16 8 6.4657 -0.8989 5.3938 17 6 5.9075 -1.9893 4.8305 18 1 5.5244 -1.9400 3.8219 19 6 5.8252 -3.1740 5.5462 20 7 6.2913 -3.2340 6.7749 21 14 5.0511 -4.6846 4.7661 22 1 6.0975 -5.4707 4.0647 23 1 4.4271 -5.5221 5.8218 24 1 4.0132 -4.2618 3.7918 25 6 5.9178 0.2526 3.3863 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5137 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 3.3366 3.6140 -0.1346 32 1 4.8645 2.9356 -0.7455 33 1 3.5684 3.8107 -2.6288 34 1 3.6144 2.0342 -2.7299 35 1 2.1503 2.8542 -2.1365 36 1 6.2922 3.5337 2.6654 37 1 7.1795 3.5353 4.9600 38 1 7.2553 1.4451 6.2553 39 1 6.2340 -4.0629 7.2754 40 1 5.5640 -0.6674 2.9450 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841342798.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:46 Heat of formation + Delta-G solvation = -130.350932 kcal Electronic energy + Delta-G solvation = -23680.483940 eV Core-core repulsion = 20040.812304 eV Total energy + Delta-G solvation = -3639.671636 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.03459 -39.11796 -38.30261 -36.71387 -35.71225 -34.17128 -32.32598 -31.02100 -29.88012 -28.98593 -27.60305 -25.43378 -23.46627 -22.79995 -21.97013 -21.68373 -20.46892 -18.31998 -18.08586 -17.47766 -17.06445 -15.99816 -15.93702 -15.17221 -15.09364 -14.87634 -14.37803 -14.21784 -14.11329 -13.84359 -13.55730 -13.12857 -12.83756 -12.62832 -12.59332 -12.27527 -11.95799 -11.91100 -11.57215 -11.56987 -11.34811 -11.30183 -11.07685 -10.99989 -10.88826 -10.65543 -10.51415 -10.31339 -9.71501 -9.49789 -8.89377 -8.18066 -7.37342 -6.50218 -4.09653 1.73406 2.19424 2.25097 2.93995 3.09475 3.11343 3.15867 3.44699 3.92573 4.42303 4.51709 4.63837 4.82019 4.91178 5.03172 5.03489 5.09204 5.17267 5.25922 5.27130 5.48315 5.53068 5.57856 5.73051 5.75736 5.81027 5.82831 5.97834 5.98174 6.04237 6.14222 6.27440 6.53581 6.80467 6.89580 6.97757 7.07302 7.11647 7.30865 7.57836 7.93336 8.13457 8.94829 9.61017 10.67322 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.012943 B = 0.004930 C = 0.003784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2162.806775 B = 5678.492379 C = 7396.901641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.048 3.952 3 O -0.352 6.352 4 C 0.108 3.892 5 H 0.100 0.900 6 C -0.115 4.115 7 C -0.147 4.147 8 C 0.424 3.576 9 O -0.468 6.468 10 O -0.296 6.296 11 C 0.119 3.881 12 C -0.211 4.211 13 C -0.065 4.065 14 C -0.186 4.186 15 C 0.164 3.836 16 O -0.170 6.170 17 C -0.393 4.393 18 H 0.090 0.910 19 C 0.042 3.958 20 N -0.859 5.859 21 Si 0.940 3.060 22 H -0.272 1.272 23 H -0.275 1.275 24 H -0.268 1.268 25 C -0.231 4.231 26 H 0.072 0.928 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.052 0.948 30 H 0.058 0.942 31 H 0.078 0.922 32 H 0.092 0.908 33 H 0.060 0.940 34 H 0.055 0.945 35 H 0.063 0.937 36 H 0.115 0.885 37 H 0.123 0.877 38 H 0.124 0.876 39 H 0.271 0.729 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.836 8.670 -16.003 19.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.028 4.028 3 O -0.270 6.270 4 C 0.048 3.952 5 H 0.117 0.883 6 C -0.152 4.152 7 C -0.204 4.204 8 C 0.265 3.735 9 O -0.351 6.351 10 O -0.212 6.212 11 C 0.079 3.921 12 C -0.230 4.230 13 C -0.083 4.083 14 C -0.205 4.205 15 C 0.109 3.891 16 O -0.073 6.073 17 C -0.469 4.469 18 H 0.107 0.893 19 C -0.163 4.163 20 N -0.494 5.494 21 Si 0.765 3.235 22 H -0.197 1.197 23 H -0.200 1.200 24 H -0.192 1.192 25 C -0.250 4.250 26 H 0.091 0.909 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.097 0.903 32 H 0.111 0.889 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.133 0.867 37 H 0.141 0.859 38 H 0.142 0.858 39 H 0.081 0.919 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -6.088 8.504 -15.238 18.482 hybrid contribution -0.232 -1.140 -0.240 1.188 sum -6.320 7.363 -15.478 18.268 Atomic orbital electron populations 1.21704 0.93187 1.02441 1.03118 1.22706 0.96178 0.83157 1.00776 1.88013 1.17798 1.27368 1.93809 1.21703 0.82569 1.01689 0.89269 0.88275 1.21597 1.02475 0.93975 0.97186 1.21713 1.01983 1.01949 0.94800 1.24995 0.81098 0.74039 0.93355 1.90739 1.61985 1.41620 1.40781 1.84517 1.23690 1.83426 1.29542 1.18233 0.97874 0.93694 0.82323 1.20508 1.10047 0.95914 0.96555 1.20492 0.97848 0.96990 0.93000 1.20338 1.08504 0.90546 1.01158 1.19115 0.92465 0.87854 0.89631 1.83997 1.67339 1.14010 1.41988 1.21307 1.39099 0.86753 0.99759 0.89256 1.25283 0.96963 0.98505 0.95524 1.70032 1.42436 1.27670 1.09230 0.85720 0.79148 0.79982 0.78672 1.19725 1.20041 1.19215 1.21189 1.09867 0.98117 0.95867 0.90910 0.91522 0.91963 0.93011 0.92334 0.90319 0.88940 0.92050 0.92559 0.91803 0.86720 0.85945 0.85843 0.91882 0.85196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 10.28 37.16 0.38 -1.07 16 2 C 0.05 0.57 6.37 37.16 0.24 0.81 16 3 O -0.35 -4.71 9.18 -55.18 -0.51 -5.21 16 4 C 0.11 1.35 2.63 -27.88 -0.07 1.28 16 5 H 0.10 1.01 7.77 -51.93 -0.40 0.61 16 6 C -0.11 -1.14 5.60 -26.74 -0.15 -1.29 16 7 C -0.15 -1.13 9.75 37.15 0.36 -0.77 16 8 C 0.42 7.36 7.08 36.01 0.25 7.62 16 9 O -0.47 -10.02 15.44 -25.48 -0.39 -10.42 16 10 O -0.30 -5.36 9.85 -23.63 -0.23 -5.59 16 11 C 0.12 2.48 5.17 -39.24 -0.20 2.27 16 12 C -0.21 -3.92 9.99 -39.38 -0.39 -4.32 16 13 C -0.06 -1.18 10.03 -39.63 -0.40 -1.58 16 14 C -0.19 -3.99 9.99 -39.37 -0.39 -4.38 16 15 C 0.16 4.10 6.65 -39.13 -0.26 3.84 16 16 O -0.17 -4.95 9.76 0.06 0.00 -4.95 16 17 C -0.39 -11.28 9.49 30.89 0.29 -10.98 16 18 H 0.09 2.43 5.20 -52.49 -0.27 2.16 16 19 C 0.04 1.17 5.49 -17.52 -0.10 1.08 16 20 N -0.86 -25.32 13.67 55.48 0.76 -24.56 16 21 Si 0.94 20.85 29.55 -169.99 -5.02 15.83 16 22 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 23 H -0.28 -5.94 7.11 56.52 0.40 -5.53 16 24 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 25 C -0.23 -5.45 8.60 -39.25 -0.34 -5.79 16 26 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.07 0.73 8.14 -51.92 -0.42 0.31 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.05 0.49 7.97 -51.93 -0.41 0.08 16 30 H 0.06 0.83 7.72 -51.93 -0.40 0.43 16 31 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.09 0.84 8.01 -51.93 -0.42 0.43 16 33 H 0.06 0.40 8.14 -51.92 -0.42 -0.03 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.06 0.52 7.94 -51.93 -0.41 0.11 16 36 H 0.11 1.79 8.06 -52.49 -0.42 1.37 16 37 H 0.12 1.75 8.06 -52.49 -0.42 1.32 16 38 H 0.12 2.48 8.06 -52.49 -0.42 2.05 16 39 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 40 H 0.13 3.16 5.64 -52.49 -0.30 2.86 16 LS Contribution 347.48 15.07 5.24 5.24 Total: -1.00 -33.46 347.48 -6.49 -39.95 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -5.56 Total: 3.00 kcal Atomic # 6 Polarization: -12.51 SS G_CDS: -0.78 Total: -13.28 kcal Atomic # 7 Polarization: -25.32 SS G_CDS: 0.76 Total: -24.56 kcal Atomic # 8 Polarization: -25.04 SS G_CDS: -1.13 Total: -26.17 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.46 -6.49 -39.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841342798.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.400 kcal (2) G-P(sol) polarization free energy of solvation -33.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds