Wall clock time and date at job start Tue Mar 31 2020 06:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46959 * 2 1 4 4 C 1.42901 * 113.99724 * 184.96903 * 3 2 1 5 5 H 1.08998 * 109.46952 * 34.35240 * 4 3 2 6 6 C 1.52999 * 109.46802 * 154.35274 * 4 3 2 7 7 C 1.52990 * 109.47308 * 295.68942 * 6 4 3 8 8 C 1.50699 * 109.47249 * 274.35380 * 4 3 2 9 9 O 1.20832 * 119.99924 * 0.02562 * 8 4 3 10 10 O 1.34270 * 120.00013 * 179.97438 * 8 4 3 11 11 C 1.35922 * 116.99504 * 175.02762 * 10 8 4 12 12 C 1.38832 * 120.01993 * 255.63965 * 11 10 8 13 13 C 1.38182 * 120.08255 * 180.02562 * 12 11 10 14 14 C 1.38159 * 120.12241 * 359.78451 * 13 12 11 15 15 C 1.38899 * 120.04271 * 0.46942 * 14 13 12 16 16 O 1.35744 * 120.04202 * 179.78553 * 15 14 13 17 17 C 1.34833 * 116.99756 * 174.34551 * 16 15 14 18 18 H 1.07997 * 120.00142 * 5.08270 * 17 16 15 19 19 C 1.38656 * 119.99768 * 185.08434 * 17 16 15 20 20 N 1.31557 * 120.00008 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99919 * 179.97438 * 19 17 16 22 22 H 1.48491 * 109.46983 * 89.99914 * 21 19 17 23 23 H 1.48502 * 109.46976 * 210.00320 * 21 19 17 24 24 H 1.48501 * 109.47165 * 330.00076 * 21 19 17 25 25 C 1.38570 * 120.02141 * 75.66673 * 11 10 8 26 26 H 1.09002 * 109.47230 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.46955 * 299.99696 * 1 2 3 28 28 H 1.09001 * 109.47392 * 59.99408 * 1 2 3 29 29 H 1.09001 * 109.46956 * 240.00767 * 2 1 3 30 30 H 1.08996 * 109.47381 * 120.00106 * 2 1 3 31 31 H 1.08996 * 109.47125 * 55.69709 * 6 4 3 32 32 H 1.09007 * 109.46853 * 175.68953 * 6 4 3 33 33 H 1.09007 * 109.47424 * 185.03284 * 7 6 4 34 34 H 1.08999 * 109.47576 * 305.03444 * 7 6 4 35 35 H 1.09001 * 109.47115 * 65.03636 * 7 6 4 36 36 H 1.07993 * 119.95727 * 0.02562 * 12 11 10 37 37 H 1.07999 * 119.94075 * 180.02562 * 13 12 11 38 38 H 1.07997 * 119.98084 * 180.25725 * 14 13 12 39 39 H 0.96996 * 119.99676 * 180.02562 * 20 19 17 40 40 H 1.07996 * 120.06081 * 359.97438 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4262 1.4618 -0.1131 5 1 3.8056 0.6623 -0.7494 6 6 3.7811 2.8163 -0.7296 7 6 3.2397 2.8837 -2.1589 8 6 4.0494 1.3536 1.2547 9 8 3.3495 1.1944 2.2267 10 8 5.3826 1.4332 1.3933 11 6 5.8723 1.4326 2.6612 12 6 6.3277 2.6141 3.2305 13 6 6.8262 2.6149 4.5192 14 6 6.8690 1.4411 5.2468 15 6 6.4197 0.2551 4.6804 16 8 6.4657 -0.8989 5.3938 17 6 5.9075 -1.9893 4.8305 18 1 5.5244 -1.9400 3.8219 19 6 5.8252 -3.1740 5.5462 20 7 6.2913 -3.2340 6.7749 21 14 5.0511 -4.6846 4.7661 22 1 6.0975 -5.4707 4.0647 23 1 4.4271 -5.5221 5.8218 24 1 4.0132 -4.2618 3.7918 25 6 5.9178 0.2526 3.3863 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5137 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 3.3366 3.6140 -0.1346 32 1 4.8645 2.9356 -0.7455 33 1 3.5684 3.8107 -2.6288 34 1 3.6144 2.0342 -2.7299 35 1 2.1503 2.8542 -2.1365 36 1 6.2922 3.5337 2.6654 37 1 7.1795 3.5353 4.9600 38 1 7.2553 1.4451 6.2553 39 1 6.2340 -4.0629 7.2754 40 1 5.5640 -0.6674 2.9450 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841342798.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:45 Heat of formation + Delta-G solvation = -150.457417 kcal Electronic energy + Delta-G solvation = -23681.355823 eV Core-core repulsion = 20040.812304 eV Total energy + Delta-G solvation = -3640.543519 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.50430 -40.74532 -39.65253 -38.27552 -37.36300 -35.01020 -34.37769 -31.85591 -31.51276 -30.71974 -28.69084 -27.45513 -24.72447 -23.83710 -23.43649 -22.94155 -21.91317 -20.14824 -19.69124 -18.87153 -18.29685 -17.55160 -17.42907 -16.91502 -16.27825 -16.18928 -15.97308 -15.64212 -15.57788 -15.15815 -14.90153 -14.70922 -14.47853 -13.78250 -13.53976 -13.35435 -13.29583 -13.06758 -13.02089 -12.97270 -12.79203 -12.56728 -12.38974 -12.22167 -12.10347 -11.96118 -11.84961 -11.76468 -11.54393 -10.91152 -10.78327 -9.84396 -9.19954 -8.56761 -6.26480 0.08375 0.50741 0.88416 1.26918 1.36132 1.44629 1.57636 2.09760 2.46176 2.68759 3.01152 3.32116 3.43832 3.71901 3.77531 3.94399 4.05825 4.14425 4.21030 4.27454 4.34359 4.38644 4.46136 4.50078 4.70474 4.76052 4.84406 4.89543 4.96627 4.97154 5.11552 5.15912 5.20336 5.30943 5.37868 5.44734 5.45795 5.49857 5.83442 5.90027 5.98518 6.65608 6.86735 7.61634 8.65613 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.012943 B = 0.004930 C = 0.003784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2162.806775 B = 5678.492379 C = 7396.901641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.041 3.959 3 O -0.362 6.362 4 C 0.111 3.889 5 H 0.128 0.872 6 C -0.111 4.111 7 C -0.142 4.142 8 C 0.423 3.577 9 O -0.517 6.517 10 O -0.288 6.288 11 C 0.110 3.890 12 C -0.190 4.190 13 C -0.047 4.047 14 C -0.194 4.194 15 C 0.127 3.873 16 O -0.220 6.220 17 C -0.420 4.420 18 H 0.089 0.911 19 C -0.015 4.015 20 N -0.912 5.912 21 Si 1.015 2.985 22 H -0.256 1.256 23 H -0.263 1.263 24 H -0.262 1.262 25 C -0.250 4.250 26 H 0.089 0.911 27 H 0.048 0.952 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.025 0.975 31 H 0.070 0.930 32 H 0.104 0.896 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.057 0.943 36 H 0.159 0.841 37 H 0.177 0.823 38 H 0.132 0.868 39 H 0.276 0.724 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.151 10.543 -18.893 22.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.035 4.035 3 O -0.280 6.280 4 C 0.051 3.949 5 H 0.146 0.854 6 C -0.148 4.148 7 C -0.199 4.199 8 C 0.267 3.733 9 O -0.403 6.403 10 O -0.203 6.203 11 C 0.069 3.931 12 C -0.209 4.209 13 C -0.065 4.065 14 C -0.213 4.213 15 C 0.076 3.924 16 O -0.126 6.126 17 C -0.496 4.496 18 H 0.107 0.893 19 C -0.213 4.213 20 N -0.549 5.549 21 Si 0.833 3.167 22 H -0.180 1.180 23 H -0.188 1.188 24 H -0.186 1.186 25 C -0.269 4.269 26 H 0.107 0.893 27 H 0.067 0.933 28 H 0.098 0.902 29 H 0.099 0.901 30 H 0.044 0.956 31 H 0.089 0.911 32 H 0.122 0.878 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.177 0.823 37 H 0.195 0.805 38 H 0.149 0.851 39 H 0.085 0.915 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -6.393 10.431 -18.171 21.906 hybrid contribution -0.118 -1.398 0.540 1.504 sum -6.512 9.033 -17.631 20.853 Atomic orbital electron populations 1.21719 0.91755 1.03564 1.03063 1.22878 0.97489 0.82594 1.00571 1.88019 1.18231 1.28270 1.93517 1.22125 0.82015 1.04415 0.86357 0.85440 1.21673 1.03252 0.91713 0.98193 1.21692 1.01545 1.03391 0.93272 1.26248 0.80207 0.72017 0.94852 1.90727 1.62694 1.44019 1.42818 1.84550 1.24472 1.83322 1.27980 1.18458 0.97931 0.93497 0.83216 1.21128 1.06618 0.96438 0.96688 1.21099 0.95478 0.97511 0.92419 1.20730 1.08040 0.90509 1.02040 1.19709 0.94118 0.88169 0.90440 1.83954 1.69827 1.15256 1.43596 1.21676 1.40072 0.87647 1.00207 0.89347 1.26538 0.97177 1.01580 0.96047 1.70152 1.44754 1.28953 1.11034 0.84664 0.78502 0.75471 0.78033 1.18007 1.18759 1.18640 1.21175 1.10877 0.98773 0.96120 0.89258 0.93280 0.90231 0.90062 0.95607 0.91136 0.87765 0.90431 0.91342 0.92399 0.82324 0.80530 0.85050 0.91450 0.87397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 10.28 71.98 0.74 -1.93 16 2 C 0.04 0.93 6.37 71.98 0.46 1.39 16 3 O -0.36 -9.24 9.18 -129.90 -1.19 -10.43 16 4 C 0.11 2.57 2.63 29.85 0.08 2.65 16 5 H 0.13 2.25 7.77 -2.39 -0.02 2.24 16 6 C -0.11 -1.87 5.60 30.59 0.17 -1.70 16 7 C -0.14 -1.68 9.75 71.98 0.70 -0.98 16 8 C 0.42 14.44 7.08 71.24 0.50 14.95 16 9 O -0.52 -22.62 15.44 28.38 0.44 -22.19 16 10 O -0.29 -10.07 9.85 4.50 0.04 -10.03 16 11 C 0.11 4.48 5.17 22.49 0.12 4.60 16 12 C -0.19 -6.41 9.99 22.40 0.22 -6.19 16 13 C -0.05 -1.56 10.03 22.24 0.22 -1.34 16 14 C -0.19 -8.28 9.99 22.41 0.22 -8.06 16 15 C 0.13 6.65 6.65 22.56 0.15 6.80 16 16 O -0.22 -13.71 9.76 -22.70 -0.22 -13.93 16 17 C -0.42 -25.72 9.49 67.92 0.64 -25.07 16 18 H 0.09 5.19 5.20 -2.91 -0.02 5.17 16 19 C -0.01 -0.86 5.49 84.83 0.47 -0.40 16 20 N -0.91 -56.51 13.67 21.61 0.30 -56.21 16 21 Si 1.01 44.23 29.55 68.60 2.03 46.25 16 22 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 23 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 24 H -0.26 -11.00 7.11 99.48 0.71 -10.30 16 25 C -0.25 -12.29 8.60 22.49 0.19 -12.09 16 26 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 28 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.08 1.35 7.97 -2.39 -0.02 1.34 16 30 H 0.03 0.75 7.72 -2.39 -0.02 0.73 16 31 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.10 1.52 8.01 -2.38 -0.02 1.50 16 33 H 0.08 0.70 8.14 -2.38 -0.02 0.68 16 34 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.06 0.77 7.94 -2.39 -0.02 0.75 16 36 H 0.16 4.03 8.06 -2.91 -0.02 4.01 16 37 H 0.18 3.97 8.06 -2.91 -0.02 3.95 16 38 H 0.13 5.29 8.06 -2.91 -0.02 5.27 16 39 H 0.28 15.56 8.31 -92.71 -0.77 14.79 16 40 H 0.11 5.65 5.64 -2.91 -0.02 5.64 16 Total: -1.00 -79.77 347.48 7.32 -72.44 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: 1.04 Total: 21.46 kcal Atomic # 6 Polarization: -32.27 SS G_CDS: 4.90 Total: -27.38 kcal Atomic # 7 Polarization: -56.51 SS G_CDS: 0.30 Total: -56.21 kcal Atomic # 8 Polarization: -55.64 SS G_CDS: -0.93 Total: -56.57 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.25 kcal Total: -79.77 7.32 -72.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841342798.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.013 kcal (2) G-P(sol) polarization free energy of solvation -79.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds