Wall clock time and date at job start Tue Mar 31 2020 06:37:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47397 * 2 1 4 4 C 1.52999 * 109.47145 * 185.00366 * 3 2 1 5 5 O 1.42896 * 109.47055 * 64.99792 * 3 2 1 6 6 C 1.42901 * 114.00028 * 60.00335 * 5 3 2 7 7 C 1.50707 * 109.46906 * 304.99979 * 3 2 1 8 8 O 1.20826 * 120.00047 * 119.99915 * 7 3 2 9 9 O 1.34262 * 120.00085 * 299.99757 * 7 3 2 10 10 C 1.35923 * 117.00167 * 185.33587 * 9 7 3 11 11 C 1.38822 * 120.02454 * 246.73624 * 10 9 7 12 12 C 1.38185 * 120.07829 * 180.27539 * 11 10 9 13 13 C 1.38153 * 120.12833 * 359.49191 * 12 11 10 14 14 C 1.38896 * 120.03887 * 0.51137 * 13 12 11 15 15 O 1.35748 * 120.04278 * 179.72392 * 14 13 12 16 16 C 1.34827 * 117.00208 * 185.96347 * 15 14 13 17 17 H 1.08008 * 119.99902 * 354.89765 * 16 15 14 18 18 C 1.38646 * 120.00482 * 174.90222 * 16 15 14 19 19 N 1.31561 * 119.99748 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00455 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47411 * 89.99965 * 20 18 16 22 22 H 1.48507 * 109.47135 * 210.00068 * 20 18 16 23 23 H 1.48498 * 109.46853 * 329.99761 * 20 18 16 24 24 C 1.38572 * 120.01596 * 66.75794 * 10 9 7 25 25 H 1.08994 * 109.47012 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47135 * 300.00378 * 1 2 3 27 27 H 1.09006 * 109.46756 * 59.99963 * 1 2 3 28 28 H 1.09001 * 109.47135 * 239.99622 * 2 1 3 29 29 H 1.09000 * 109.47441 * 120.00114 * 2 1 3 30 30 H 1.09002 * 109.47068 * 180.02562 * 4 3 2 31 31 H 1.09002 * 109.46662 * 299.99495 * 4 3 2 32 32 H 1.08996 * 109.47580 * 59.99739 * 4 3 2 33 33 H 1.08997 * 109.46855 * 179.97438 * 6 5 3 34 34 H 1.09002 * 109.46892 * 299.99778 * 6 5 3 35 35 H 1.09003 * 109.47110 * 59.99848 * 6 5 3 36 36 H 1.08001 * 119.95824 * 0.02562 * 11 10 9 37 37 H 1.08004 * 119.93581 * 179.74510 * 12 11 10 38 38 H 1.07997 * 119.98280 * 180.22639 * 13 12 11 39 39 H 0.96999 * 120.00011 * 179.97438 * 19 18 16 40 40 H 1.08004 * 120.06137 * 359.96415 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5649 1.4442 -0.1258 5 8 1.6620 2.0814 1.2210 6 6 2.1825 1.4501 2.3927 7 6 1.4392 2.1877 -1.1639 8 8 0.7572 3.1657 -0.9679 9 8 1.6617 1.7650 -2.4187 10 6 1.1851 2.5436 -3.4258 11 6 0.1622 2.0769 -4.2400 12 6 -0.3193 2.8652 -5.2678 13 6 0.2083 4.1240 -5.4818 14 6 1.2320 4.5960 -4.6703 15 8 1.7542 5.8306 -4.8841 16 6 2.8254 6.1788 -4.1430 17 1 3.1789 5.5213 -3.3624 18 6 3.4732 7.3810 -4.3829 19 7 3.0430 8.1817 -5.3339 20 14 4.9569 7.8637 -3.3557 21 1 6.1932 7.3542 -4.0016 22 1 5.0266 9.3435 -3.2516 23 1 4.8304 7.2774 -1.9972 24 6 1.7204 3.8036 -3.6407 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.9283 2.4719 -0.1254 31 1 3.9995 0.9052 0.7161 32 1 3.8532 0.9569 -1.0571 33 1 1.8509 1.9950 3.2765 34 1 1.8220 0.4226 2.4423 35 1 3.2718 1.4516 2.3527 36 1 -0.2551 1.0949 -4.0725 37 1 -1.1124 2.4982 -5.9025 38 1 -0.1722 4.7395 -6.2834 39 1 3.4959 9.0229 -5.5015 40 1 2.5162 4.1684 -3.0081 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841344053.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:06 Heat of formation + Delta-G solvation = -118.594369 kcal Electronic energy + Delta-G solvation = -24207.439764 eV Core-core repulsion = 20568.277931 eV Total energy + Delta-G solvation = -3639.161834 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.19811 -39.35139 -38.46747 -36.78513 -35.71902 -33.81669 -32.30509 -30.58934 -29.64744 -28.89925 -27.47492 -25.49442 -24.59966 -23.59870 -21.90069 -21.47983 -20.06302 -18.28723 -17.73046 -17.55880 -16.52203 -16.24458 -15.67627 -15.56297 -15.13481 -14.72118 -14.46717 -14.23788 -13.67304 -13.56741 -13.55384 -13.46646 -13.16706 -12.76843 -12.55114 -12.38118 -12.15186 -11.91418 -11.60542 -11.53924 -11.40224 -11.24017 -11.11818 -11.04276 -10.83098 -10.50047 -10.34407 -10.04679 -9.84741 -9.52322 -8.87319 -8.15395 -7.35502 -6.48200 -4.07478 1.68037 2.20480 2.36119 2.69225 3.12254 3.13029 3.18238 3.79626 3.94905 4.29539 4.43799 4.57952 4.72067 4.94209 5.02561 5.04279 5.11727 5.16176 5.20637 5.35388 5.39948 5.44606 5.57855 5.59023 5.68888 5.77374 5.81451 5.90458 5.99354 6.08002 6.14944 6.26888 6.55452 6.81493 6.89911 6.99567 7.08643 7.13042 7.32829 7.59879 7.95406 8.15677 8.96907 9.62956 10.69285 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.014733 B = 0.005133 C = 0.004021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.091025 B = 5453.661575 C = 6961.930954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.146 4.146 3 C 0.131 3.869 4 C -0.180 4.180 5 O -0.355 6.355 6 C 0.024 3.976 7 C 0.466 3.534 8 O -0.460 6.460 9 O -0.291 6.291 10 C 0.122 3.878 11 C -0.210 4.210 12 C -0.064 4.064 13 C -0.187 4.187 14 C 0.165 3.835 15 O -0.170 6.170 16 C -0.392 4.392 17 H 0.090 0.910 18 C 0.042 3.958 19 N -0.860 5.860 20 Si 0.940 3.060 21 H -0.272 1.272 22 H -0.276 1.276 23 H -0.267 1.267 24 C -0.234 4.234 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.056 0.944 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.048 0.952 35 H 0.048 0.952 36 H 0.115 0.885 37 H 0.123 0.877 38 H 0.124 0.876 39 H 0.271 0.729 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.253 -16.817 10.867 20.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.184 4.184 3 C 0.090 3.910 4 C -0.238 4.238 5 O -0.274 6.274 6 C -0.072 4.072 7 C 0.307 3.693 8 O -0.341 6.341 9 O -0.206 6.206 10 C 0.081 3.919 11 C -0.229 4.229 12 C -0.083 4.083 13 C -0.206 4.206 14 C 0.111 3.889 15 O -0.073 6.073 16 C -0.468 4.468 17 H 0.108 0.892 18 C -0.163 4.163 19 N -0.494 5.494 20 Si 0.764 3.236 21 H -0.197 1.197 22 H -0.201 1.201 23 H -0.191 1.191 24 C -0.254 4.254 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.107 0.893 29 H 0.100 0.900 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.104 0.896 33 H 0.110 0.890 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.133 0.867 37 H 0.141 0.859 38 H 0.142 0.858 39 H 0.081 0.919 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -0.602 -15.888 10.677 19.152 hybrid contribution 0.940 0.123 0.631 1.139 sum 0.338 -15.766 11.308 19.405 Atomic orbital electron populations 1.21783 0.94464 1.02096 1.02930 1.22162 0.97821 0.94104 1.04273 1.20854 0.94814 0.91733 0.83581 1.22436 0.92639 1.04426 1.04267 1.88067 1.73951 1.53115 1.12292 1.22921 0.98689 0.98187 0.87367 1.23114 0.79013 0.83600 0.83591 1.90747 1.33779 1.24850 1.84772 1.84470 1.71777 1.50454 1.13948 1.18241 0.95204 0.90647 0.87789 1.20426 0.99598 1.01661 1.01211 1.20486 0.98301 0.93038 0.96434 1.20333 1.00633 0.97143 1.02518 1.19109 0.92377 0.85597 0.91859 1.83993 1.41953 1.24390 1.56935 1.21309 1.05221 1.05159 1.15148 0.89237 1.25279 0.98878 0.95032 0.97084 1.70035 1.39512 1.10650 1.29190 0.85722 0.80020 0.78325 0.79503 1.19728 1.20065 1.19127 1.21202 1.06019 0.94799 1.03389 0.91912 0.91795 0.92505 0.89271 0.90002 0.90709 0.90523 0.89595 0.88967 0.93347 0.93302 0.86665 0.85915 0.85836 0.91897 0.85167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 9.49 37.16 0.35 -1.34 16 2 C -0.15 -1.47 4.72 -26.73 -0.13 -1.59 16 3 C 0.13 1.74 0.76 -91.77 -0.07 1.67 16 4 C -0.18 -1.98 8.18 37.16 0.30 -1.68 16 5 O -0.36 -4.98 9.41 -55.18 -0.52 -5.50 16 6 C 0.02 0.22 10.22 101.05 1.03 1.25 16 7 C 0.47 8.43 4.89 36.01 0.18 8.60 16 8 O -0.46 -10.26 15.82 -25.48 -0.40 -10.66 16 9 O -0.29 -5.30 9.87 -23.61 -0.23 -5.54 16 10 C 0.12 2.53 5.34 -39.24 -0.21 2.32 16 11 C -0.21 -3.89 9.99 -39.38 -0.39 -4.28 16 12 C -0.06 -1.16 10.03 -39.63 -0.40 -1.56 16 13 C -0.19 -4.00 9.99 -39.37 -0.39 -4.40 16 14 C 0.17 4.15 6.64 -39.13 -0.26 3.89 16 15 O -0.17 -4.96 9.76 0.06 0.00 -4.96 16 16 C -0.39 -11.30 9.49 30.88 0.29 -11.01 16 17 H 0.09 2.45 5.21 -52.48 -0.27 2.18 16 18 C 0.04 1.18 5.49 -17.52 -0.10 1.08 16 19 N -0.86 -25.41 13.67 55.48 0.76 -24.65 16 20 Si 0.94 20.99 29.55 -169.99 -5.02 15.97 16 21 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 22 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 23 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 24 C -0.23 -5.56 8.30 -39.25 -0.33 -5.89 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.72 7.82 -51.93 -0.41 0.32 16 27 H 0.06 0.75 7.07 -51.93 -0.37 0.38 16 28 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.08 0.61 6.29 -51.93 -0.33 0.28 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.08 0.61 6.54 -51.93 -0.34 0.27 16 32 H 0.09 0.89 8.11 -51.93 -0.42 0.47 16 33 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.05 0.34 6.31 -51.93 -0.33 0.01 16 35 H 0.05 0.36 6.42 -51.93 -0.33 0.03 16 36 H 0.12 1.80 8.06 -52.49 -0.42 1.38 16 37 H 0.12 1.74 8.06 -52.48 -0.42 1.32 16 38 H 0.12 2.47 8.06 -52.49 -0.42 2.05 16 39 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 40 H 0.13 3.20 5.64 -52.48 -0.30 2.91 16 LS Contribution 337.40 15.07 5.08 5.08 Total: -1.00 -34.12 337.40 -5.63 -39.76 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -5.19 Total: 3.43 kcal Atomic # 6 Polarization: -12.82 SS G_CDS: -0.11 Total: -12.93 kcal Atomic # 7 Polarization: -25.41 SS G_CDS: 0.76 Total: -24.65 kcal Atomic # 8 Polarization: -25.50 SS G_CDS: -1.16 Total: -26.66 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -34.12 -5.63 -39.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841344053.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.837 kcal (2) G-P(sol) polarization free energy of solvation -34.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds