Wall clock time and date at job start Tue Mar 31 2020 06:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47397 * 2 1 4 4 C 1.52999 * 109.47145 * 185.00366 * 3 2 1 5 5 O 1.42896 * 109.47055 * 64.99792 * 3 2 1 6 6 C 1.42901 * 114.00028 * 60.00335 * 5 3 2 7 7 C 1.50707 * 109.46906 * 304.99979 * 3 2 1 8 8 O 1.20826 * 120.00047 * 119.99915 * 7 3 2 9 9 O 1.34262 * 120.00085 * 299.99757 * 7 3 2 10 10 C 1.35923 * 117.00167 * 185.33587 * 9 7 3 11 11 C 1.38822 * 120.02454 * 246.73624 * 10 9 7 12 12 C 1.38185 * 120.07829 * 180.27539 * 11 10 9 13 13 C 1.38153 * 120.12833 * 359.49191 * 12 11 10 14 14 C 1.38896 * 120.03887 * 0.51137 * 13 12 11 15 15 O 1.35748 * 120.04278 * 179.72392 * 14 13 12 16 16 C 1.34827 * 117.00208 * 185.96347 * 15 14 13 17 17 H 1.08008 * 119.99902 * 354.89765 * 16 15 14 18 18 C 1.38646 * 120.00482 * 174.90222 * 16 15 14 19 19 N 1.31561 * 119.99748 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00455 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47411 * 89.99965 * 20 18 16 22 22 H 1.48507 * 109.47135 * 210.00068 * 20 18 16 23 23 H 1.48498 * 109.46853 * 329.99761 * 20 18 16 24 24 C 1.38572 * 120.01596 * 66.75794 * 10 9 7 25 25 H 1.08994 * 109.47012 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47135 * 300.00378 * 1 2 3 27 27 H 1.09006 * 109.46756 * 59.99963 * 1 2 3 28 28 H 1.09001 * 109.47135 * 239.99622 * 2 1 3 29 29 H 1.09000 * 109.47441 * 120.00114 * 2 1 3 30 30 H 1.09002 * 109.47068 * 180.02562 * 4 3 2 31 31 H 1.09002 * 109.46662 * 299.99495 * 4 3 2 32 32 H 1.08996 * 109.47580 * 59.99739 * 4 3 2 33 33 H 1.08997 * 109.46855 * 179.97438 * 6 5 3 34 34 H 1.09002 * 109.46892 * 299.99778 * 6 5 3 35 35 H 1.09003 * 109.47110 * 59.99848 * 6 5 3 36 36 H 1.08001 * 119.95824 * 0.02562 * 11 10 9 37 37 H 1.08004 * 119.93581 * 179.74510 * 12 11 10 38 38 H 1.07997 * 119.98280 * 180.22639 * 13 12 11 39 39 H 0.96999 * 120.00011 * 179.97438 * 19 18 16 40 40 H 1.08004 * 120.06137 * 359.96415 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5649 1.4442 -0.1258 5 8 1.6620 2.0814 1.2210 6 6 2.1825 1.4501 2.3927 7 6 1.4392 2.1877 -1.1639 8 8 0.7572 3.1657 -0.9679 9 8 1.6617 1.7650 -2.4187 10 6 1.1851 2.5436 -3.4258 11 6 0.1622 2.0769 -4.2400 12 6 -0.3193 2.8652 -5.2678 13 6 0.2083 4.1240 -5.4818 14 6 1.2320 4.5960 -4.6703 15 8 1.7542 5.8306 -4.8841 16 6 2.8254 6.1788 -4.1430 17 1 3.1789 5.5213 -3.3624 18 6 3.4732 7.3810 -4.3829 19 7 3.0430 8.1817 -5.3339 20 14 4.9569 7.8637 -3.3557 21 1 6.1932 7.3542 -4.0016 22 1 5.0266 9.3435 -3.2516 23 1 4.8304 7.2774 -1.9972 24 6 1.7204 3.8036 -3.6407 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.9283 2.4719 -0.1254 31 1 3.9995 0.9052 0.7161 32 1 3.8532 0.9569 -1.0571 33 1 1.8509 1.9950 3.2765 34 1 1.8220 0.4226 2.4423 35 1 3.2718 1.4516 2.3527 36 1 -0.2551 1.0949 -4.0725 37 1 -1.1124 2.4982 -5.9025 38 1 -0.1722 4.7395 -6.2834 39 1 3.4959 9.0229 -5.5015 40 1 2.5162 4.1684 -3.0081 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841344053.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:05 Heat of formation + Delta-G solvation = -140.319428 kcal Electronic energy + Delta-G solvation = -24208.381833 eV Core-core repulsion = 20568.277931 eV Total energy + Delta-G solvation = -3640.103903 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.64206 -40.82771 -39.91178 -38.40551 -37.39895 -34.74367 -34.36315 -31.62997 -31.21147 -30.61813 -28.25394 -27.52111 -25.83875 -24.64616 -23.51950 -23.00237 -21.38743 -20.16757 -19.44253 -18.72959 -18.04925 -17.66384 -16.93213 -16.87314 -16.58742 -16.15981 -15.98334 -15.83620 -15.59165 -14.86585 -14.74406 -14.49719 -14.35921 -14.27747 -13.78367 -13.74765 -13.32296 -13.18565 -13.03172 -12.95699 -12.78996 -12.56634 -12.37367 -12.25562 -12.21797 -12.01020 -11.92041 -11.62439 -11.27314 -10.88187 -10.68969 -9.83422 -9.19174 -8.56006 -6.25588 0.05045 0.51235 0.94699 1.27787 1.32984 1.39535 1.45399 2.10749 2.67081 2.86261 3.01988 3.29027 3.40052 3.46879 3.67470 3.94391 4.13310 4.19267 4.26547 4.28203 4.41909 4.46814 4.48124 4.55371 4.60907 4.69310 4.73937 4.84843 4.89747 4.97332 4.97990 5.01637 5.07370 5.26586 5.29331 5.38947 5.46421 5.50500 5.90859 5.91919 6.04047 6.65284 6.87504 7.62236 8.66314 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.014733 B = 0.005133 C = 0.004021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.091025 B = 5453.661575 C = 6961.930954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.140 4.140 3 C 0.133 3.867 4 C -0.179 4.179 5 O -0.393 6.393 6 C 0.015 3.985 7 C 0.463 3.537 8 O -0.513 6.513 9 O -0.281 6.281 10 C 0.112 3.888 11 C -0.188 4.188 12 C -0.046 4.046 13 C -0.194 4.194 14 C 0.128 3.872 15 O -0.220 6.220 16 C -0.419 4.419 17 H 0.088 0.912 18 C -0.014 4.014 19 N -0.911 5.911 20 Si 1.014 2.986 21 H -0.255 1.255 22 H -0.263 1.263 23 H -0.263 1.263 24 C -0.252 4.252 25 H 0.090 0.910 26 H 0.053 0.947 27 H 0.026 0.974 28 H 0.102 0.898 29 H 0.119 0.881 30 H 0.050 0.950 31 H 0.116 0.884 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.073 0.927 35 H 0.065 0.935 36 H 0.159 0.841 37 H 0.179 0.821 38 H 0.132 0.868 39 H 0.276 0.724 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.143 -20.540 12.189 23.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.177 4.177 3 C 0.092 3.908 4 C -0.236 4.236 5 O -0.313 6.313 6 C -0.079 4.079 7 C 0.306 3.694 8 O -0.398 6.398 9 O -0.196 6.196 10 C 0.071 3.929 11 C -0.206 4.206 12 C -0.063 4.063 13 C -0.213 4.213 14 C 0.076 3.924 15 O -0.126 6.126 16 C -0.495 4.495 17 H 0.106 0.894 18 C -0.213 4.213 19 N -0.549 5.549 20 Si 0.833 3.167 21 H -0.179 1.179 22 H -0.187 1.187 23 H -0.187 1.187 24 C -0.272 4.272 25 H 0.109 0.891 26 H 0.072 0.928 27 H 0.045 0.955 28 H 0.120 0.880 29 H 0.137 0.863 30 H 0.070 0.930 31 H 0.134 0.866 32 H 0.111 0.889 33 H 0.117 0.883 34 H 0.091 0.909 35 H 0.083 0.917 36 H 0.177 0.823 37 H 0.196 0.804 38 H 0.150 0.850 39 H 0.086 0.914 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -0.505 -19.682 12.005 23.060 hybrid contribution 0.694 0.989 0.267 1.237 sum 0.189 -18.693 12.272 22.363 Atomic orbital electron populations 1.21796 0.95266 1.03258 1.00986 1.22238 0.97044 0.91734 1.06701 1.21094 0.95629 0.92512 0.81566 1.22493 0.90995 1.03715 1.06412 1.88023 1.74940 1.54798 1.13588 1.23226 0.99758 0.99356 0.85610 1.24407 0.77726 0.83081 0.84151 1.90719 1.36467 1.27412 1.85246 1.84495 1.71590 1.49521 1.13989 1.18475 0.95615 0.89859 0.88987 1.21053 0.97214 1.03079 0.99305 1.21103 0.98198 0.90973 0.96069 1.20729 0.99611 0.98796 1.02175 1.19715 0.93857 0.85273 0.93508 1.83948 1.43259 1.26791 1.58594 1.21661 1.06074 1.06019 1.15777 0.89447 1.26526 1.01981 0.94436 0.98364 1.70153 1.41686 1.11503 1.31514 0.84673 0.76012 0.78446 0.77607 1.17928 1.18719 1.18724 1.21161 1.06350 0.96462 1.03261 0.89100 0.92774 0.95466 0.87992 0.86326 0.93042 0.86581 0.88923 0.88301 0.90905 0.91682 0.82300 0.80387 0.84964 0.91446 0.87599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.00 9.49 71.98 0.68 -2.31 16 2 C -0.14 -2.32 4.72 30.59 0.14 -2.17 16 3 C 0.13 3.32 0.76 -11.54 -0.01 3.32 16 4 C -0.18 -3.58 8.18 71.98 0.59 -2.99 16 5 O -0.39 -10.64 9.41 -129.90 -1.22 -11.86 16 6 C 0.02 0.23 10.22 113.37 1.16 1.39 16 7 C 0.46 16.82 4.89 71.24 0.35 17.17 16 8 O -0.51 -23.85 15.82 28.39 0.45 -23.40 16 9 O -0.28 -10.08 9.87 4.56 0.05 -10.04 16 10 C 0.11 4.62 5.34 22.49 0.12 4.74 16 11 C -0.19 -6.39 9.99 22.40 0.22 -6.17 16 12 C -0.05 -1.51 10.03 22.24 0.22 -1.29 16 13 C -0.19 -8.31 9.99 22.41 0.22 -8.08 16 14 C 0.13 6.76 6.64 22.56 0.15 6.91 16 15 O -0.22 -13.79 9.76 -22.69 -0.22 -14.02 16 16 C -0.42 -25.91 9.49 67.92 0.64 -25.26 16 17 H 0.09 5.20 5.21 -2.91 -0.02 5.18 16 18 C -0.01 -0.85 5.49 84.83 0.47 -0.38 16 19 N -0.91 -56.77 13.67 21.61 0.30 -56.47 16 20 Si 1.01 44.69 29.55 68.60 2.03 46.72 16 21 H -0.25 -10.43 7.11 99.48 0.71 -9.72 16 22 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 23 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 24 C -0.25 -12.60 8.30 22.49 0.19 -12.42 16 25 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.05 1.13 7.82 -2.39 -0.02 1.12 16 27 H 0.03 0.67 7.07 -2.38 -0.02 0.65 16 28 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.12 1.13 6.29 -2.39 -0.02 1.12 16 30 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.12 1.38 6.54 -2.39 -0.02 1.36 16 32 H 0.09 1.71 8.11 -2.39 -0.02 1.69 16 33 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.07 0.71 6.31 -2.39 -0.02 0.69 16 35 H 0.06 0.74 6.42 -2.39 -0.02 0.73 16 36 H 0.16 4.10 8.06 -2.91 -0.02 4.07 16 37 H 0.18 3.98 8.06 -2.91 -0.02 3.96 16 38 H 0.13 5.33 8.06 -2.91 -0.02 5.31 16 39 H 0.28 15.64 8.31 -92.71 -0.77 14.86 16 40 H 0.11 5.68 5.64 -2.91 -0.02 5.66 16 Total: -1.00 -83.10 337.40 7.58 -75.52 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: 1.05 Total: 21.12 kcal Atomic # 6 Polarization: -32.72 SS G_CDS: 5.15 Total: -27.56 kcal Atomic # 7 Polarization: -56.77 SS G_CDS: 0.30 Total: -56.47 kcal Atomic # 8 Polarization: -58.37 SS G_CDS: -0.95 Total: -59.32 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -83.10 7.58 -75.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841344053.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.802 kcal (2) G-P(sol) polarization free energy of solvation -83.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds