Wall clock time and date at job start Tue Mar 31 2020 06:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47213 * 2 1 4 4 C 1.53001 * 109.47095 * 304.99852 * 3 2 1 5 5 O 1.42894 * 109.47341 * 64.99600 * 3 2 1 6 6 C 1.42898 * 113.99706 * 60.00180 * 5 3 2 7 7 C 1.50697 * 109.47188 * 185.00321 * 3 2 1 8 8 O 1.20825 * 120.00570 * 24.99301 * 7 3 2 9 9 O 1.34273 * 119.99808 * 205.00181 * 7 3 2 10 10 C 1.35919 * 116.99779 * 175.03186 * 9 7 3 11 11 C 1.38831 * 120.01794 * 255.01132 * 10 9 7 12 12 C 1.38190 * 120.08017 * 179.72265 * 11 10 9 13 13 C 1.38149 * 120.12290 * 0.55261 * 12 11 10 14 14 C 1.38896 * 120.04425 * 359.72486 * 13 12 11 15 15 O 1.35751 * 120.04232 * 179.97438 * 14 13 12 16 16 C 1.34831 * 116.99713 * 185.61719 * 15 14 13 17 17 H 1.08004 * 120.00274 * 354.93788 * 16 15 14 18 18 C 1.38659 * 119.99847 * 174.93953 * 16 15 14 19 19 N 1.31547 * 119.99792 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99828 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47372 * 59.99788 * 20 18 16 22 22 H 1.48503 * 109.47068 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47055 * 299.99473 * 20 18 16 24 24 C 1.38569 * 120.02472 * 75.28550 * 10 9 7 25 25 H 1.08993 * 109.47309 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47362 * 300.00296 * 1 2 3 27 27 H 1.09002 * 109.46914 * 60.00047 * 1 2 3 28 28 H 1.08999 * 109.47635 * 240.00125 * 2 1 3 29 29 H 1.08999 * 109.47157 * 119.99477 * 2 1 3 30 30 H 1.08993 * 109.47612 * 179.97438 * 4 3 2 31 31 H 1.09004 * 109.47301 * 300.00232 * 4 3 2 32 32 H 1.09005 * 109.47285 * 59.99669 * 4 3 2 33 33 H 1.08995 * 109.47497 * 300.00038 * 6 5 3 34 34 H 1.09002 * 109.47410 * 60.00328 * 6 5 3 35 35 H 1.09009 * 109.47198 * 179.97438 * 6 5 3 36 36 H 1.08001 * 119.95714 * 359.97438 * 11 10 9 37 37 H 1.08000 * 119.94012 * 180.25464 * 12 11 10 38 38 H 1.08001 * 119.98062 * 179.69816 * 13 12 11 39 39 H 0.97005 * 119.99793 * 180.02562 * 19 18 16 40 40 H 1.07996 * 120.05882 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4300 2.1991 -1.1817 5 8 1.6619 2.0815 1.2209 6 6 2.1824 1.4503 2.3926 7 6 3.5419 1.4443 -0.1239 8 8 4.1066 0.5100 -0.6416 9 8 4.2526 2.4843 0.3411 10 6 5.6067 2.3773 0.2924 11 6 6.3261 2.1309 1.4540 12 6 7.7024 2.0162 1.4050 13 6 8.3676 2.1576 0.2025 14 6 7.6534 2.4098 -0.9618 15 8 8.3072 2.5492 -2.1433 16 6 7.5686 2.9075 -3.2129 17 1 6.4953 2.9903 -3.1249 18 6 8.1869 3.1698 -4.4260 19 7 9.4942 3.0694 -4.5331 20 14 7.1637 3.6669 -5.9076 21 1 6.4266 4.9194 -5.6025 22 1 8.0562 3.8886 -7.0736 23 1 6.1949 2.5870 -6.2249 24 6 6.2705 2.5196 -0.9156 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5137 0.8900 30 1 1.7929 3.2269 -1.1815 31 1 1.7183 1.7118 -2.1131 32 1 0.3436 2.1978 -1.0922 33 1 1.8220 0.4228 2.4423 34 1 3.2716 1.4517 2.3527 35 1 1.8508 1.9951 3.2766 36 1 5.8092 2.0248 2.3963 37 1 8.2595 1.8205 2.3094 38 1 9.4437 2.0723 0.1677 39 1 9.9268 3.2532 -5.3816 40 1 5.7128 2.7153 -1.8194 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841344054.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:09 Heat of formation + Delta-G solvation = -120.955488 kcal Electronic energy + Delta-G solvation = -24172.734065 eV Core-core repulsion = 20533.469846 eV Total energy + Delta-G solvation = -3639.264219 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.29158 -39.29675 -38.38372 -37.01360 -35.77318 -33.98718 -32.33127 -30.39671 -29.63419 -28.90381 -26.64346 -25.92108 -25.41563 -23.64873 -21.80393 -21.17387 -19.83949 -18.44399 -18.14597 -17.57523 -16.41035 -16.24515 -15.77428 -15.56176 -15.18162 -14.77104 -14.44440 -14.23279 -13.92891 -13.65053 -13.54499 -13.18227 -12.91922 -12.73179 -12.55753 -12.25920 -12.06328 -11.93824 -11.85118 -11.57047 -11.42689 -11.27830 -11.15073 -11.07144 -10.83191 -10.53259 -10.41121 -10.31209 -9.83422 -9.52237 -8.89180 -8.18924 -7.38285 -6.50168 -4.09662 1.71788 2.16822 2.18878 2.90331 3.11196 3.12708 3.14949 3.47256 3.93058 4.34126 4.42701 4.52841 4.76461 5.01505 5.02188 5.07006 5.17219 5.18720 5.25089 5.36934 5.41257 5.51620 5.57745 5.60036 5.70327 5.72870 5.74595 5.95945 5.97197 6.05887 6.13139 6.25242 6.52577 6.74187 6.86576 6.95815 7.05877 7.10628 7.30181 7.55147 7.93140 8.09209 8.94690 9.60530 10.67187 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.016030 B = 0.004796 C = 0.003899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.349629 B = 5837.317511 C = 7178.874851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.143 4.143 3 C 0.135 3.865 4 C -0.145 4.145 5 O -0.356 6.356 6 C 0.018 3.982 7 C 0.432 3.568 8 O -0.477 6.477 9 O -0.284 6.284 10 C 0.116 3.884 11 C -0.213 4.213 12 C -0.064 4.064 13 C -0.187 4.187 14 C 0.164 3.836 15 O -0.169 6.169 16 C -0.394 4.394 17 H 0.090 0.910 18 C 0.043 3.957 19 N -0.859 5.859 20 Si 0.940 3.060 21 H -0.268 1.268 22 H -0.276 1.276 23 H -0.269 1.269 24 C -0.230 4.230 25 H 0.060 0.940 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.090 0.910 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.048 0.952 34 H 0.047 0.953 35 H 0.094 0.906 36 H 0.113 0.887 37 H 0.122 0.878 38 H 0.124 0.876 39 H 0.272 0.728 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.985 -3.281 10.214 19.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.180 4.180 3 C 0.094 3.906 4 C -0.202 4.202 5 O -0.274 6.274 6 C -0.078 4.078 7 C 0.273 3.727 8 O -0.361 6.361 9 O -0.199 6.199 10 C 0.076 3.924 11 C -0.232 4.232 12 C -0.083 4.083 13 C -0.206 4.206 14 C 0.110 3.890 15 O -0.072 6.072 16 C -0.470 4.470 17 H 0.108 0.892 18 C -0.162 4.162 19 N -0.494 5.494 20 Si 0.765 3.235 21 H -0.193 1.193 22 H -0.201 1.201 23 H -0.194 1.194 24 C -0.250 4.250 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.109 0.891 29 H 0.092 0.908 30 H 0.096 0.904 31 H 0.100 0.900 32 H 0.105 0.895 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.113 0.887 36 H 0.131 0.869 37 H 0.140 0.860 38 H 0.142 0.858 39 H 0.082 0.918 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -15.473 -3.397 9.770 18.611 hybrid contribution -0.173 -0.001 -0.717 0.738 sum -15.645 -3.398 9.052 18.392 Atomic orbital electron populations 1.21773 0.93799 1.02079 1.02844 1.22054 0.97554 0.93763 1.04670 1.21528 0.85138 0.95441 0.88497 1.21904 1.02450 1.01321 0.94510 1.88022 1.73085 1.53573 1.12731 1.22956 0.98950 0.98067 0.87834 1.24937 0.91648 0.80284 0.75780 1.90727 1.71922 1.34837 1.38597 1.84629 1.17904 1.42115 1.75253 1.18296 0.79116 1.01044 0.93978 1.20473 0.94437 1.11747 0.96584 1.20482 0.93033 0.98009 0.96750 1.20330 0.99897 1.09938 0.90449 1.19122 0.89822 0.92533 0.87561 1.83996 1.35789 1.74350 1.13085 1.21275 0.91427 1.47705 0.86609 0.89243 1.25285 0.96206 0.96475 0.98275 1.70022 1.08279 1.44614 1.26437 0.85788 0.78941 0.79392 0.79418 1.19343 1.20079 1.19406 1.21198 0.95072 1.11219 0.97484 0.92143 0.91901 0.91796 0.89148 0.90813 0.90397 0.89998 0.89454 0.93375 0.93449 0.88722 0.86909 0.85961 0.85832 0.91815 0.85098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.32 37.16 0.35 -0.86 16 2 C -0.14 -1.55 4.42 -26.73 -0.12 -1.67 16 3 C 0.14 1.75 0.78 -91.77 -0.07 1.68 16 4 C -0.14 -1.61 8.34 37.16 0.31 -1.30 16 5 O -0.36 -4.44 9.69 -49.11 -0.48 -4.92 16 6 C 0.02 0.19 10.26 101.05 1.04 1.23 16 7 C 0.43 7.50 5.48 36.00 0.20 7.69 16 8 O -0.48 -9.69 15.42 -18.75 -0.29 -9.98 16 9 O -0.28 -5.37 9.11 -28.79 -0.26 -5.63 16 10 C 0.12 2.44 5.18 -39.24 -0.20 2.23 16 11 C -0.21 -3.97 9.99 -39.38 -0.39 -4.37 16 12 C -0.06 -1.17 10.03 -39.63 -0.40 -1.57 16 13 C -0.19 -3.99 9.99 -39.37 -0.39 -4.39 16 14 C 0.16 4.11 6.65 -39.13 -0.26 3.85 16 15 O -0.17 -4.92 9.76 0.04 0.00 -4.92 16 16 C -0.39 -11.28 9.49 30.89 0.29 -10.99 16 17 H 0.09 2.42 5.20 -52.48 -0.27 2.15 16 18 C 0.04 1.18 5.49 -17.52 -0.10 1.09 16 19 N -0.86 -25.26 13.67 55.48 0.76 -24.50 16 20 Si 0.94 20.78 29.55 -169.99 -5.02 15.76 16 21 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 22 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 23 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16 24 C -0.23 -5.46 8.58 -39.25 -0.34 -5.80 16 25 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.50 7.82 -51.93 -0.41 0.10 16 27 H 0.06 0.47 6.34 -51.93 -0.33 0.14 16 28 H 0.09 1.06 7.69 -51.93 -0.40 0.66 16 29 H 0.07 0.78 6.29 -51.93 -0.33 0.46 16 30 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.09 0.75 6.35 -51.93 -0.33 0.42 16 33 H 0.05 0.43 6.31 -51.93 -0.33 0.10 16 34 H 0.05 0.58 6.69 -51.93 -0.35 0.23 16 35 H 0.09 0.78 8.14 -51.92 -0.42 0.36 16 36 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 37 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 38 H 0.12 2.47 8.06 -52.49 -0.42 2.05 16 39 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 40 H 0.13 3.20 5.64 -52.49 -0.30 2.90 16 LS Contribution 335.88 15.07 5.06 5.06 Total: -1.00 -32.90 335.88 -5.45 -38.35 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -5.13 Total: 3.94 kcal Atomic # 6 Polarization: -13.07 SS G_CDS: -0.09 Total: -13.16 kcal Atomic # 7 Polarization: -25.26 SS G_CDS: 0.76 Total: -24.50 kcal Atomic # 8 Polarization: -24.43 SS G_CDS: -1.03 Total: -25.45 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.90 -5.45 -38.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841344054.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.606 kcal (2) G-P(sol) polarization free energy of solvation -32.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds