Wall clock time and date at job start Tue Mar 31 2020 06:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47213 * 2 1 4 4 C 1.53001 * 109.47095 * 304.99852 * 3 2 1 5 5 O 1.42894 * 109.47341 * 64.99600 * 3 2 1 6 6 C 1.42898 * 113.99706 * 60.00180 * 5 3 2 7 7 C 1.50697 * 109.47188 * 185.00321 * 3 2 1 8 8 O 1.20825 * 120.00570 * 24.99301 * 7 3 2 9 9 O 1.34273 * 119.99808 * 205.00181 * 7 3 2 10 10 C 1.35919 * 116.99779 * 175.03186 * 9 7 3 11 11 C 1.38831 * 120.01794 * 255.01132 * 10 9 7 12 12 C 1.38190 * 120.08017 * 179.72265 * 11 10 9 13 13 C 1.38149 * 120.12290 * 0.55261 * 12 11 10 14 14 C 1.38896 * 120.04425 * 359.72486 * 13 12 11 15 15 O 1.35751 * 120.04232 * 179.97438 * 14 13 12 16 16 C 1.34831 * 116.99713 * 185.61719 * 15 14 13 17 17 H 1.08004 * 120.00274 * 354.93788 * 16 15 14 18 18 C 1.38659 * 119.99847 * 174.93953 * 16 15 14 19 19 N 1.31547 * 119.99792 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99828 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47372 * 59.99788 * 20 18 16 22 22 H 1.48503 * 109.47068 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47055 * 299.99473 * 20 18 16 24 24 C 1.38569 * 120.02472 * 75.28550 * 10 9 7 25 25 H 1.08993 * 109.47309 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47362 * 300.00296 * 1 2 3 27 27 H 1.09002 * 109.46914 * 60.00047 * 1 2 3 28 28 H 1.08999 * 109.47635 * 240.00125 * 2 1 3 29 29 H 1.08999 * 109.47157 * 119.99477 * 2 1 3 30 30 H 1.08993 * 109.47612 * 179.97438 * 4 3 2 31 31 H 1.09004 * 109.47301 * 300.00232 * 4 3 2 32 32 H 1.09005 * 109.47285 * 59.99669 * 4 3 2 33 33 H 1.08995 * 109.47497 * 300.00038 * 6 5 3 34 34 H 1.09002 * 109.47410 * 60.00328 * 6 5 3 35 35 H 1.09009 * 109.47198 * 179.97438 * 6 5 3 36 36 H 1.08001 * 119.95714 * 359.97438 * 11 10 9 37 37 H 1.08000 * 119.94012 * 180.25464 * 12 11 10 38 38 H 1.08001 * 119.98062 * 179.69816 * 13 12 11 39 39 H 0.97005 * 119.99793 * 180.02562 * 19 18 16 40 40 H 1.07996 * 120.05882 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4300 2.1991 -1.1817 5 8 1.6619 2.0815 1.2209 6 6 2.1824 1.4503 2.3926 7 6 3.5419 1.4443 -0.1239 8 8 4.1066 0.5100 -0.6416 9 8 4.2526 2.4843 0.3411 10 6 5.6067 2.3773 0.2924 11 6 6.3261 2.1309 1.4540 12 6 7.7024 2.0162 1.4050 13 6 8.3676 2.1576 0.2025 14 6 7.6534 2.4098 -0.9618 15 8 8.3072 2.5492 -2.1433 16 6 7.5686 2.9075 -3.2129 17 1 6.4953 2.9903 -3.1249 18 6 8.1869 3.1698 -4.4260 19 7 9.4942 3.0694 -4.5331 20 14 7.1637 3.6669 -5.9076 21 1 6.4266 4.9194 -5.6025 22 1 8.0562 3.8886 -7.0736 23 1 6.1949 2.5870 -6.2249 24 6 6.2705 2.5196 -0.9156 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5137 0.8900 30 1 1.7929 3.2269 -1.1815 31 1 1.7183 1.7118 -2.1131 32 1 0.3436 2.1978 -1.0922 33 1 1.8220 0.4228 2.4423 34 1 3.2716 1.4517 2.3527 35 1 1.8508 1.9951 3.2766 36 1 5.8092 2.0248 2.3963 37 1 8.2595 1.8205 2.3094 38 1 9.4437 2.0723 0.1677 39 1 9.9268 3.2532 -5.3816 40 1 5.7128 2.7153 -1.8194 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841344054.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:08 Heat of formation + Delta-G solvation = -141.250348 kcal Electronic energy + Delta-G solvation = -24173.614116 eV Core-core repulsion = 20533.469846 eV Total energy + Delta-G solvation = -3640.144270 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.70872 -40.85531 -39.78681 -38.54569 -37.45681 -34.88871 -34.38029 -31.64719 -31.02094 -30.55854 -27.60319 -27.45146 -26.85610 -24.93276 -23.50700 -22.66353 -20.99218 -20.17384 -19.73585 -19.09797 -17.92867 -17.64606 -16.97029 -16.85084 -16.61904 -16.22842 -16.01165 -15.80196 -15.61680 -15.12456 -14.76206 -14.56323 -14.33959 -13.81965 -13.73732 -13.61537 -13.25782 -13.09705 -13.01915 -12.85620 -12.80996 -12.74662 -12.58413 -12.33030 -12.21164 -11.98659 -11.89960 -11.64118 -11.41110 -10.90872 -10.81525 -9.85845 -9.21407 -8.56037 -6.25957 0.07036 0.49023 0.79116 1.28627 1.38583 1.45189 1.54569 2.11017 2.52079 2.67408 3.00791 3.23932 3.37791 3.52029 3.65589 3.93436 4.10818 4.22734 4.25737 4.30705 4.38449 4.42505 4.48585 4.54645 4.58244 4.67002 4.76838 4.82793 4.88615 4.93098 4.97351 5.03184 5.17488 5.28252 5.35848 5.38823 5.43551 5.48585 5.79461 5.90186 5.95707 6.59760 6.87194 7.61341 8.65940 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.016030 B = 0.004796 C = 0.003899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.349629 B = 5837.317511 C = 7178.874851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.140 4.140 3 C 0.140 3.860 4 C -0.147 4.147 5 O -0.359 6.359 6 C 0.010 3.990 7 C 0.430 3.570 8 O -0.513 6.513 9 O -0.286 6.286 10 C 0.107 3.893 11 C -0.193 4.193 12 C -0.046 4.046 13 C -0.194 4.194 14 C 0.128 3.872 15 O -0.219 6.219 16 C -0.422 4.422 17 H 0.090 0.910 18 C -0.014 4.014 19 N -0.911 5.911 20 Si 1.014 2.986 21 H -0.256 1.256 22 H -0.262 1.262 23 H -0.261 1.261 24 C -0.250 4.250 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.118 0.882 33 H 0.065 0.935 34 H 0.029 0.971 35 H 0.120 0.880 36 H 0.155 0.845 37 H 0.178 0.822 38 H 0.133 0.867 39 H 0.277 0.723 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.566 -3.525 12.411 22.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.178 4.178 3 C 0.098 3.902 4 C -0.204 4.204 5 O -0.278 6.278 6 C -0.085 4.085 7 C 0.274 3.726 8 O -0.399 6.399 9 O -0.201 6.201 10 C 0.066 3.934 11 C -0.211 4.211 12 C -0.063 4.063 13 C -0.213 4.213 14 C 0.077 3.923 15 O -0.125 6.125 16 C -0.497 4.497 17 H 0.107 0.893 18 C -0.213 4.213 19 N -0.548 5.548 20 Si 0.832 3.168 21 H -0.181 1.181 22 H -0.186 1.186 23 H -0.185 1.185 24 C -0.269 4.269 25 H 0.093 0.907 26 H 0.087 0.913 27 H 0.091 0.909 28 H 0.096 0.904 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.098 0.902 32 H 0.137 0.863 33 H 0.083 0.917 34 H 0.047 0.953 35 H 0.138 0.862 36 H 0.173 0.827 37 H 0.195 0.805 38 H 0.151 0.849 39 H 0.086 0.914 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -18.085 -3.643 12.029 22.024 hybrid contribution 0.533 0.002 -1.035 1.164 sum -17.552 -3.640 10.995 21.029 Atomic orbital electron populations 1.21771 0.91232 1.03316 1.03578 1.22086 0.99586 0.91951 1.04166 1.21757 0.81629 0.97221 0.89552 1.21998 1.04278 1.00387 0.93738 1.88028 1.72717 1.54079 1.12939 1.23176 0.97899 0.99581 0.87879 1.26116 0.93230 0.79041 0.74231 1.90710 1.72887 1.36078 1.40228 1.84664 1.16856 1.43166 1.75376 1.18533 0.80422 1.00637 0.93796 1.21074 0.94839 1.08033 0.97199 1.21088 0.93060 0.94999 0.97192 1.20724 1.00660 1.09422 0.90499 1.19710 0.90825 0.93943 0.87795 1.83954 1.36988 1.77183 1.14368 1.21656 0.91761 1.48824 0.87507 0.89263 1.26540 0.97590 0.95982 1.01148 1.70144 1.10256 1.46845 1.27592 0.84734 0.77400 0.79446 0.75189 1.18050 1.18622 1.18533 1.21171 0.94836 1.12783 0.98146 0.90720 0.91279 0.90901 0.90446 0.90664 0.91363 0.90189 0.86326 0.91694 0.95251 0.86210 0.82719 0.80477 0.84932 0.91427 0.87316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.32 71.98 0.67 -1.20 16 2 C -0.14 -2.80 4.42 30.59 0.14 -2.66 16 3 C 0.14 3.42 0.78 -11.54 -0.01 3.41 16 4 C -0.15 -3.08 8.34 71.98 0.60 -2.48 16 5 O -0.36 -8.08 9.69 -135.71 -1.31 -9.40 16 6 C 0.01 0.19 10.26 113.37 1.16 1.35 16 7 C 0.43 14.82 5.48 71.24 0.39 15.21 16 8 O -0.51 -21.24 15.42 21.96 0.34 -20.90 16 9 O -0.29 -10.67 9.11 9.46 0.09 -10.58 16 10 C 0.11 4.45 5.18 22.49 0.12 4.57 16 11 C -0.19 -6.60 9.99 22.40 0.22 -6.37 16 12 C -0.05 -1.51 10.03 22.24 0.22 -1.28 16 13 C -0.19 -8.25 9.99 22.41 0.22 -8.03 16 14 C 0.13 6.74 6.65 22.56 0.15 6.89 16 15 O -0.22 -13.60 9.76 -22.76 -0.22 -13.82 16 16 C -0.42 -25.72 9.49 67.92 0.64 -25.07 16 17 H 0.09 5.20 5.20 -2.91 -0.02 5.19 16 18 C -0.01 -0.80 5.49 84.84 0.47 -0.34 16 19 N -0.91 -56.29 13.67 21.61 0.30 -56.00 16 20 Si 1.01 44.00 29.55 68.60 2.03 46.02 16 21 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 22 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 23 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 24 C -0.25 -12.37 8.58 22.49 0.19 -12.17 16 25 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.07 0.85 7.82 -2.39 -0.02 0.83 16 27 H 0.07 0.84 6.34 -2.39 -0.02 0.82 16 28 H 0.08 1.75 7.69 -2.39 -0.02 1.74 16 29 H 0.07 1.45 6.29 -2.39 -0.02 1.44 16 30 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 32 H 0.12 1.72 6.35 -2.38 -0.02 1.70 16 33 H 0.06 0.95 6.31 -2.39 -0.02 0.94 16 34 H 0.03 0.63 6.69 -2.39 -0.02 0.62 16 35 H 0.12 1.54 8.14 -2.38 -0.02 1.52 16 36 H 0.16 4.06 8.06 -2.91 -0.02 4.03 16 37 H 0.18 3.97 8.06 -2.91 -0.02 3.94 16 38 H 0.13 5.30 8.06 -2.91 -0.02 5.28 16 39 H 0.28 15.55 8.31 -92.70 -0.77 14.78 16 40 H 0.11 5.74 5.64 -2.91 -0.02 5.72 16 Total: -1.00 -77.61 335.88 7.46 -70.15 By element: Atomic # 1 Polarization: 21.64 SS G_CDS: 1.06 Total: 22.70 kcal Atomic # 6 Polarization: -33.36 SS G_CDS: 5.19 Total: -28.17 kcal Atomic # 7 Polarization: -56.29 SS G_CDS: 0.30 Total: -56.00 kcal Atomic # 8 Polarization: -53.59 SS G_CDS: -1.11 Total: -54.70 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.02 kcal Total: -77.61 7.46 -70.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841344054.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.101 kcal (2) G-P(sol) polarization free energy of solvation -77.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds