Wall clock time and date at job start Tue Mar 31 2020 07:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42900 * 113.99799 * 2 1 4 4 H 1.08998 * 109.47019 * 29.99965 * 3 2 1 5 5 C 1.53006 * 109.47182 * 269.99785 * 3 2 1 6 6 C 1.52995 * 109.47006 * 150.00216 * 3 2 1 7 7 C 1.52999 * 109.47275 * 294.99922 * 6 3 2 8 8 C 1.50695 * 109.47568 * 180.02562 * 7 6 3 9 9 O 1.20830 * 120.00134 * 359.97438 * 8 7 6 10 10 O 1.34265 * 120.00211 * 180.02562 * 8 7 6 11 11 C 1.35925 * 117.00187 * 175.01153 * 10 8 7 12 12 C 1.38832 * 120.02144 * 255.31541 * 11 10 8 13 13 C 1.38178 * 120.08098 * 179.97438 * 12 11 10 14 14 C 1.38152 * 120.12649 * 359.78778 * 13 12 11 15 15 C 1.38887 * 120.04129 * 0.46722 * 14 13 12 16 16 O 1.35760 * 120.04516 * 179.79025 * 15 14 13 17 17 C 1.34834 * 116.99919 * 174.12504 * 16 15 14 18 18 H 1.07995 * 120.00101 * 5.06431 * 17 16 15 19 19 C 1.38648 * 119.99366 * 185.06234 * 17 16 15 20 20 N 1.31556 * 120.00473 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99524 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47239 * 359.97438 * 21 19 17 23 23 H 1.48505 * 109.47138 * 120.00034 * 21 19 17 24 24 H 1.48505 * 109.47093 * 239.99419 * 21 19 17 25 25 C 1.38564 * 120.02232 * 75.28867 * 11 10 8 26 26 H 1.09003 * 109.46815 * 59.99711 * 1 2 3 27 27 H 1.08995 * 109.47188 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46856 * 299.99940 * 1 2 3 29 29 H 1.08999 * 109.47140 * 300.00783 * 5 3 2 30 30 H 1.08999 * 109.46814 * 60.00416 * 5 3 2 31 31 H 1.08996 * 109.46700 * 179.97438 * 5 3 2 32 32 H 1.08998 * 109.47669 * 175.00000 * 6 3 2 33 33 H 1.09004 * 109.47487 * 54.99831 * 6 3 2 34 34 H 1.09001 * 109.47206 * 59.99581 * 7 6 3 35 35 H 1.09006 * 109.47296 * 300.00263 * 7 6 3 36 36 H 1.08000 * 119.95714 * 359.97438 * 12 11 10 37 37 H 1.08008 * 119.93924 * 180.02562 * 13 12 11 38 38 H 1.08008 * 119.98356 * 180.23035 * 14 13 12 39 39 H 0.96997 * 119.99916 * 180.02562 * 20 19 17 40 40 H 1.07996 * 120.06417 * 0.04923 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9993 0.5138 5 6 2.2177 1.7714 -1.4425 6 6 3.3589 1.2633 0.7212 7 6 3.1384 0.9184 2.1954 8 6 4.4666 0.8775 2.9059 9 8 5.4854 1.1007 2.2958 10 8 4.5183 0.5919 4.2169 11 6 5.7522 0.4685 4.7735 12 6 6.2529 -0.7894 5.0808 13 6 7.5073 -0.9163 5.6462 14 6 8.2689 0.2073 5.9033 15 6 7.7709 1.4685 5.6028 16 8 8.5175 2.5730 5.8594 17 6 8.0284 3.7550 5.4334 18 1 7.0461 3.8037 4.9872 19 6 8.7865 4.9080 5.5683 20 7 9.9829 4.8488 6.1123 21 14 8.1087 6.5458 4.9787 22 1 6.7520 6.3439 4.4096 23 1 8.0308 7.4899 6.1223 24 1 9.0046 7.1055 3.9350 25 6 6.5113 1.5980 5.0340 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 2.8829 1.0774 -1.9564 30 1 1.2569 1.8015 -1.9563 31 1 2.6606 2.7673 -1.4425 32 1 3.8427 2.2370 0.6443 33 1 3.9931 0.5052 0.2617 34 1 2.6545 -0.0553 2.2723 35 1 2.5041 1.6765 2.6550 36 1 5.6612 -1.6698 4.8777 37 1 7.8948 -1.8960 5.8840 38 1 9.2506 0.1052 6.3419 39 1 10.5131 5.6555 6.2070 40 1 6.1234 2.5774 4.7959 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841344200.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:30:37 Heat of formation + Delta-G solvation = -154.173299 kcal Electronic energy + Delta-G solvation = -23036.921572 eV Core-core repulsion = 19396.216920 eV Total energy + Delta-G solvation = -3640.704652 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.36781 -40.62331 -39.46942 -38.63324 -37.36935 -34.85815 -34.35869 -31.84894 -31.08527 -30.57619 -27.63280 -27.46266 -26.34868 -23.98079 -23.35353 -22.17927 -21.59896 -20.13138 -19.55047 -18.43078 -17.95873 -17.63659 -17.31774 -16.89301 -16.18058 -16.13852 -16.03034 -15.90911 -15.60880 -15.03206 -14.87715 -14.61103 -14.34922 -14.04440 -13.71864 -13.40963 -13.28568 -13.15099 -13.00980 -12.79907 -12.57993 -12.50711 -12.27936 -12.17193 -12.16011 -11.92549 -11.78194 -11.57137 -11.45777 -10.87895 -10.54516 -9.82192 -9.17922 -8.54845 -6.24305 0.13518 0.52840 1.04939 1.29285 1.37770 1.47870 1.74884 2.11858 2.71373 2.87382 3.03838 3.35976 3.54713 3.69018 3.97327 4.03049 4.07984 4.17166 4.29640 4.29886 4.43584 4.50615 4.53624 4.56565 4.65017 4.78419 4.83657 4.88939 4.92744 4.95439 4.98375 5.00354 5.15430 5.30445 5.35819 5.42609 5.49838 5.54209 5.92431 5.98764 6.32230 6.74062 6.88984 7.64093 8.67848 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.014354 B = 0.003804 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.218877 B = 7359.100437 C = 8959.145487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.406 6.406 3 C 0.090 3.910 4 H 0.085 0.915 5 C -0.174 4.174 6 C -0.107 4.107 7 C -0.095 4.095 8 C 0.449 3.551 9 O -0.527 6.527 10 O -0.296 6.296 11 C 0.112 3.888 12 C -0.193 4.193 13 C -0.047 4.047 14 C -0.195 4.195 15 C 0.127 3.873 16 O -0.221 6.221 17 C -0.418 4.418 18 H 0.091 0.909 19 C -0.017 4.017 20 N -0.913 5.913 21 Si 1.016 2.984 22 H -0.258 1.258 23 H -0.260 1.260 24 H -0.265 1.265 25 C -0.248 4.248 26 H 0.048 0.952 27 H 0.093 0.907 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.064 0.936 34 H 0.132 0.868 35 H 0.132 0.868 36 H 0.157 0.843 37 H 0.176 0.824 38 H 0.131 0.869 39 H 0.276 0.724 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.236 -8.556 -10.841 24.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.326 6.326 3 C 0.032 3.968 4 H 0.103 0.897 5 C -0.232 4.232 6 C -0.145 4.145 7 C -0.132 4.132 8 C 0.295 3.705 9 O -0.414 6.414 10 O -0.211 6.211 11 C 0.071 3.929 12 C -0.212 4.212 13 C -0.065 4.065 14 C -0.215 4.215 15 C 0.076 3.924 16 O -0.127 6.127 17 C -0.494 4.494 18 H 0.108 0.892 19 C -0.215 4.215 20 N -0.551 5.551 21 Si 0.835 3.165 22 H -0.182 1.182 23 H -0.184 1.184 24 H -0.189 1.189 25 C -0.268 4.268 26 H 0.067 0.933 27 H 0.111 0.889 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.099 0.901 33 H 0.083 0.917 34 H 0.150 0.850 35 H 0.150 0.850 36 H 0.174 0.826 37 H 0.193 0.807 38 H 0.149 0.851 39 H 0.085 0.915 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -19.419 -8.474 -10.856 23.807 hybrid contribution 0.163 1.222 -0.089 1.236 sum -19.256 -7.252 -10.945 23.306 Atomic orbital electron populations 1.22973 0.79701 1.03682 1.00933 1.87917 1.21230 1.28206 1.95236 1.22126 0.93561 0.85041 0.96052 0.89738 1.22263 1.02818 1.01953 0.96154 1.21572 0.97371 1.03257 0.92269 1.21530 0.89209 1.07998 0.94479 1.25233 0.93987 0.71723 0.79550 1.90724 1.38867 1.45192 1.66609 1.84543 1.29550 1.81171 1.25864 1.18442 0.84009 0.93456 0.96970 1.21115 0.97681 0.95253 1.07110 1.21078 0.92113 0.98528 0.94793 1.20715 1.02509 0.89582 1.08655 1.19709 0.90231 0.89018 0.93468 1.83960 1.45187 1.13560 1.69989 1.21736 1.02980 0.82792 1.41884 0.89173 1.26556 0.95535 1.02969 0.96449 1.70162 1.11303 1.30984 1.42629 0.84578 0.78547 0.74790 0.78558 1.18185 1.18449 1.18946 1.21181 0.96472 0.98868 1.10296 0.93334 0.88892 0.92736 0.92696 0.91172 0.90837 0.90146 0.91743 0.84975 0.85043 0.82560 0.80654 0.85097 0.91500 0.87184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 10.82 113.37 1.23 1.46 16 2 O -0.41 -6.80 9.88 -148.98 -1.47 -8.27 16 3 C 0.09 1.35 2.72 30.59 0.08 1.44 16 4 H 0.08 0.94 7.79 -2.39 -0.02 0.92 16 5 C -0.17 -2.44 9.53 71.98 0.69 -1.76 16 6 C -0.11 -2.16 4.21 30.59 0.13 -2.03 16 7 C -0.10 -1.92 5.71 29.85 0.17 -1.75 16 8 C 0.45 14.60 7.82 71.23 0.56 15.16 16 9 O -0.53 -21.73 15.41 21.95 0.34 -21.39 16 10 O -0.30 -10.42 10.03 4.53 0.05 -10.37 16 11 C 0.11 4.59 5.18 22.49 0.12 4.71 16 12 C -0.19 -6.60 9.99 22.40 0.22 -6.38 16 13 C -0.05 -1.58 10.03 22.23 0.22 -1.36 16 14 C -0.20 -8.38 9.99 22.40 0.22 -8.15 16 15 C 0.13 6.65 6.65 22.56 0.15 6.80 16 16 O -0.22 -13.72 9.76 -22.90 -0.22 -13.95 16 17 C -0.42 -25.51 9.49 67.92 0.64 -24.87 16 18 H 0.09 5.27 5.20 -2.91 -0.02 5.25 16 19 C -0.02 -0.98 5.49 84.83 0.47 -0.51 16 20 N -0.91 -56.66 13.67 21.61 0.30 -56.37 16 21 Si 1.02 44.22 29.55 68.60 2.03 46.24 16 22 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 23 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 24 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 25 C -0.25 -12.19 8.58 22.49 0.19 -12.00 16 26 H 0.05 0.41 7.87 -2.39 -0.02 0.39 16 27 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.05 0.43 8.08 -2.39 -0.02 0.41 16 29 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.07 0.80 7.87 -2.39 -0.02 0.78 16 31 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.08 1.74 8.10 -2.39 -0.02 1.72 16 33 H 0.06 1.54 8.10 -2.39 -0.02 1.52 16 34 H 0.13 2.19 7.82 -2.39 -0.02 2.17 16 35 H 0.13 1.95 8.14 -2.38 -0.02 1.93 16 36 H 0.16 4.11 8.06 -2.91 -0.02 4.09 16 37 H 0.18 4.03 8.06 -2.91 -0.02 4.00 16 38 H 0.13 5.30 8.06 -2.91 -0.02 5.27 16 39 H 0.28 15.52 8.31 -92.71 -0.77 14.75 16 40 H 0.11 5.73 5.64 -2.91 -0.02 5.71 16 Total: -1.00 -79.08 347.35 7.14 -71.93 By element: Atomic # 1 Polarization: 20.36 SS G_CDS: 1.04 Total: 21.40 kcal Atomic # 6 Polarization: -34.32 SS G_CDS: 5.09 Total: -29.23 kcal Atomic # 7 Polarization: -56.66 SS G_CDS: 0.30 Total: -56.37 kcal Atomic # 8 Polarization: -52.67 SS G_CDS: -1.31 Total: -53.98 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.24 kcal Total: -79.08 7.14 -71.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841344200.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.238 kcal (2) G-P(sol) polarization free energy of solvation -79.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds