Wall clock time and date at job start Tue Mar 31 2020 07:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42906 * 113.99875 * 2 1 4 4 C 1.53001 * 109.47129 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.47000 * 305.00140 * 4 3 2 6 6 C 1.52997 * 109.47101 * 64.99712 * 4 3 2 7 7 C 1.52989 * 109.47403 * 185.00146 * 4 3 2 8 8 C 1.50695 * 109.47503 * 175.00195 * 7 4 3 9 9 O 1.20830 * 120.00134 * 359.97438 * 8 7 4 10 10 O 1.34265 * 120.00211 * 180.02562 * 8 7 4 11 11 C 1.35925 * 117.00187 * 175.01153 * 10 8 7 12 12 C 1.38832 * 120.02144 * 255.31541 * 11 10 8 13 13 C 1.38187 * 120.08047 * 179.97438 * 12 11 10 14 14 C 1.38146 * 120.12405 * 359.79189 * 13 12 11 15 15 C 1.38887 * 120.04426 * 0.46313 * 14 13 12 16 16 O 1.35746 * 120.04616 * 179.79158 * 15 14 13 17 17 C 1.34839 * 117.00581 * 174.12424 * 16 15 14 18 18 H 1.07995 * 119.99529 * 5.06557 * 17 16 15 19 19 C 1.38648 * 119.99937 * 185.06336 * 17 16 15 20 20 N 1.31556 * 120.00473 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99524 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47239 * 359.97438 * 21 19 17 23 23 H 1.48505 * 109.47138 * 120.00034 * 21 19 17 24 24 H 1.48505 * 109.47093 * 239.99419 * 21 19 17 25 25 C 1.38564 * 120.02232 * 75.28867 * 11 10 8 26 26 H 1.09004 * 109.47394 * 59.99707 * 1 2 3 27 27 H 1.09001 * 109.47309 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47553 * 299.99867 * 1 2 3 29 29 H 1.08999 * 109.46808 * 60.00270 * 3 2 1 30 30 H 1.08996 * 109.47295 * 299.99949 * 3 2 1 31 31 H 1.08998 * 109.47847 * 300.00318 * 6 4 3 32 32 H 1.09004 * 109.46844 * 60.00333 * 6 4 3 33 33 H 1.09000 * 109.47321 * 179.97438 * 6 4 3 34 34 H 1.09001 * 109.47228 * 54.99707 * 7 4 3 35 35 H 1.09006 * 109.47339 * 295.00349 * 7 4 3 36 36 H 1.08000 * 119.95714 * 359.97438 * 12 11 10 37 37 H 1.08004 * 119.93429 * 180.02562 * 13 12 11 38 38 H 1.08008 * 119.98060 * 180.22828 * 14 13 12 39 39 H 0.96997 * 119.99916 * 180.02562 * 20 19 17 40 40 H 1.08000 * 120.05973 * 0.05186 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.8507 0.5686 0.8427 6 6 3.9962 0.5365 -1.3063 7 6 4.1572 2.5769 0.1264 8 6 5.6536 2.4494 0.2505 9 8 6.1699 1.3570 0.2400 10 8 6.4132 3.5497 0.3738 11 6 7.7425 3.3612 0.5860 12 6 8.2799 3.5648 1.8498 13 6 9.6310 3.3731 2.0670 14 6 10.4504 2.9743 1.0288 15 6 9.9193 2.7743 -0.2388 16 8 10.7252 2.3865 -1.2600 17 6 10.1287 2.0924 -2.4330 18 1 9.0668 2.2485 -2.5527 19 6 10.8786 1.5897 -3.4852 20 7 12.1722 1.4000 -3.3395 21 14 10.0522 1.1830 -5.1104 22 1 8.6013 1.4848 -5.0171 23 1 10.6595 1.9989 -6.1924 24 1 10.2390 -0.2587 -5.4135 25 6 8.5621 2.9654 -0.4588 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.6885 1.8464 0.8900 30 1 1.6885 1.8464 -0.8899 31 1 3.5532 -0.4554 -1.3960 32 1 3.6809 1.1527 -2.1484 33 1 5.0828 0.4508 -1.3061 34 1 3.7602 3.0736 1.0117 35 1 3.9148 3.1645 -0.7592 36 1 7.6411 3.8733 2.6642 37 1 10.0465 3.5317 3.0513 38 1 11.5055 2.8215 1.2020 39 1 12.6968 1.0487 -4.0758 40 1 8.1459 2.8070 -1.4427 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841345736.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:32:49 Heat of formation + Delta-G solvation = -130.409495 kcal Electronic energy + Delta-G solvation = -23224.104819 eV Core-core repulsion = 19584.430643 eV Total energy + Delta-G solvation = -3639.674176 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.97423 -38.97285 -38.40000 -37.21008 -35.76580 -34.80302 -32.30798 -30.01425 -29.04338 -28.36329 -27.45146 -25.77451 -25.39428 -23.12395 -21.70034 -20.88904 -20.01995 -18.29251 -17.91979 -17.26807 -16.54672 -16.33938 -16.05681 -15.74924 -15.14593 -15.11194 -14.68914 -14.29438 -14.01974 -13.72303 -13.45114 -13.29514 -13.05118 -12.79254 -12.45636 -12.32139 -11.92470 -11.79313 -11.51640 -11.35709 -11.23218 -11.11456 -11.05027 -10.91058 -10.83719 -10.46564 -10.29138 -10.18226 -9.94554 -9.52082 -8.87885 -8.16826 -7.35871 -6.48411 -4.07664 1.76178 2.20697 2.34938 2.97169 3.11840 3.14184 3.19258 3.60611 3.94886 4.43621 4.56583 4.61180 4.76959 4.98957 5.00404 5.04821 5.09865 5.12825 5.15560 5.22564 5.30910 5.36670 5.57069 5.59600 5.66669 5.77376 5.98618 6.02044 6.13582 6.15885 6.30672 6.45202 6.55524 6.87119 6.91708 7.01009 7.08966 7.13301 7.33188 7.59621 7.95432 8.16917 8.96965 9.62978 10.69207 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.013414 B = 0.004112 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.905246 B = 6807.738607 C = 8583.320896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.386 6.386 3 C 0.067 3.933 4 C -0.080 4.080 5 H 0.090 0.910 6 C -0.155 4.155 7 C -0.105 4.105 8 C 0.453 3.547 9 O -0.476 6.476 10 O -0.298 6.298 11 C 0.121 3.879 12 C -0.212 4.212 13 C -0.065 4.065 14 C -0.187 4.187 15 C 0.163 3.837 16 O -0.171 6.171 17 C -0.392 4.392 18 H 0.091 0.909 19 C 0.041 3.959 20 N -0.860 5.860 21 Si 0.941 3.059 22 H -0.266 1.266 23 H -0.275 1.275 24 H -0.274 1.274 25 C -0.229 4.229 26 H 0.040 0.960 27 H 0.085 0.915 28 H 0.040 0.960 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.049 0.951 33 H 0.076 0.924 34 H 0.107 0.893 35 H 0.108 0.892 36 H 0.114 0.886 37 H 0.122 0.878 38 H 0.123 0.877 39 H 0.271 0.729 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.723 2.422 6.592 20.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.305 6.305 3 C -0.009 4.009 4 C -0.099 4.099 5 H 0.109 0.891 6 C -0.212 4.212 7 C -0.143 4.143 8 C 0.295 3.705 9 O -0.360 6.360 10 O -0.214 6.214 11 C 0.080 3.920 12 C -0.232 4.232 13 C -0.084 4.084 14 C -0.206 4.206 15 C 0.109 3.891 16 O -0.074 6.074 17 C -0.468 4.468 18 H 0.109 0.891 19 C -0.163 4.163 20 N -0.494 5.494 21 Si 0.765 3.235 22 H -0.191 1.191 23 H -0.200 1.200 24 H -0.200 1.200 25 C -0.249 4.249 26 H 0.059 0.941 27 H 0.104 0.896 28 H 0.059 0.941 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.068 0.932 33 H 0.095 0.905 34 H 0.125 0.875 35 H 0.126 0.874 36 H 0.132 0.868 37 H 0.140 0.860 38 H 0.141 0.859 39 H 0.080 0.920 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -18.982 1.785 6.392 20.108 hybrid contribution -0.651 0.078 -0.859 1.081 sum -19.632 1.863 5.533 20.482 Atomic orbital electron populations 1.22739 0.81094 1.02781 0.99885 1.87901 1.19516 1.27730 1.95378 1.22540 0.93268 0.84825 1.00293 1.20916 0.92446 0.94823 1.01686 0.89139 1.21945 1.03426 1.00924 0.94870 1.21316 0.87589 0.99564 1.05819 1.23828 0.90461 0.82706 0.73463 1.90719 1.74526 1.27439 1.43360 1.84500 1.18866 1.36086 1.81951 1.18210 0.79429 1.00861 0.93496 1.20501 0.96106 1.11781 0.94788 1.20483 0.92405 0.97602 0.97865 1.20330 1.00463 1.09026 0.90785 1.19119 0.88773 0.92151 0.89049 1.83997 1.32997 1.72385 1.17995 1.21367 0.94432 1.44120 0.86861 0.89113 1.25287 0.95600 0.96126 0.99317 1.70042 1.05395 1.41330 1.32666 0.85648 0.79110 0.78598 0.80119 1.19067 1.20014 1.19966 1.21200 0.94325 1.09623 0.99773 0.94100 0.89629 0.94133 0.93112 0.92944 0.91751 0.93180 0.90501 0.87516 0.87415 0.86793 0.86004 0.85880 0.91951 0.85074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.39 -4.08 10.24 -35.23 -0.36 -4.44 16 3 C 0.07 0.60 5.32 37.16 0.20 0.80 16 4 C -0.08 -0.89 2.27 -90.63 -0.21 -1.10 16 5 H 0.09 1.14 7.96 -51.93 -0.41 0.73 16 6 C -0.15 -1.99 8.83 37.16 0.33 -1.66 16 7 C -0.11 -1.10 5.29 -27.89 -0.15 -1.25 16 8 C 0.45 7.28 7.54 36.00 0.27 7.55 16 9 O -0.48 -9.39 13.40 -18.75 -0.25 -9.64 16 10 O -0.30 -5.29 10.03 -23.62 -0.24 -5.52 16 11 C 0.12 2.47 5.18 -39.24 -0.20 2.26 16 12 C -0.21 -3.91 9.99 -39.38 -0.39 -4.31 16 13 C -0.07 -1.18 10.03 -39.63 -0.40 -1.58 16 14 C -0.19 -3.98 9.99 -39.38 -0.39 -4.37 16 15 C 0.16 4.08 6.65 -39.13 -0.26 3.82 16 16 O -0.17 -4.95 9.76 0.04 0.00 -4.95 16 17 C -0.39 -11.22 9.49 30.88 0.29 -10.92 16 18 H 0.09 2.47 5.20 -52.49 -0.27 2.19 16 19 C 0.04 1.16 5.49 -17.52 -0.10 1.06 16 20 N -0.86 -25.39 13.67 55.48 0.76 -24.63 16 21 Si 0.94 20.98 29.55 -169.99 -5.02 15.95 16 22 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 23 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 24 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 25 C -0.23 -5.37 8.58 -39.25 -0.34 -5.70 16 26 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 27 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.83 7.82 -51.93 -0.41 0.42 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.08 1.22 5.96 -51.93 -0.31 0.91 16 34 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 37 H 0.12 1.73 8.06 -52.48 -0.42 1.31 16 38 H 0.12 2.46 8.06 -52.48 -0.42 2.04 16 39 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 40 H 0.13 3.16 5.64 -52.49 -0.30 2.87 16 LS Contribution 343.82 15.07 5.18 5.18 Total: -1.00 -33.47 343.82 -5.65 -39.11 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -5.48 Total: 3.00 kcal Atomic # 6 Polarization: -13.83 SS G_CDS: -0.23 Total: -14.06 kcal Atomic # 7 Polarization: -25.39 SS G_CDS: 0.76 Total: -24.63 kcal Atomic # 8 Polarization: -23.71 SS G_CDS: -0.85 Total: -24.55 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.47 -5.65 -39.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841345736.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.296 kcal (2) G-P(sol) polarization free energy of solvation -33.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds