Wall clock time and date at job start Tue Mar 31 2020 07:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42906 * 113.99875 * 2 1 4 4 C 1.53001 * 109.47129 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.47000 * 305.00140 * 4 3 2 6 6 C 1.52997 * 109.47101 * 64.99712 * 4 3 2 7 7 C 1.52989 * 109.47403 * 185.00146 * 4 3 2 8 8 C 1.50695 * 109.47503 * 175.00195 * 7 4 3 9 9 O 1.20830 * 120.00134 * 359.97438 * 8 7 4 10 10 O 1.34265 * 120.00211 * 180.02562 * 8 7 4 11 11 C 1.35925 * 117.00187 * 175.01153 * 10 8 7 12 12 C 1.38832 * 120.02144 * 255.31541 * 11 10 8 13 13 C 1.38187 * 120.08047 * 179.97438 * 12 11 10 14 14 C 1.38146 * 120.12405 * 359.79189 * 13 12 11 15 15 C 1.38887 * 120.04426 * 0.46313 * 14 13 12 16 16 O 1.35746 * 120.04616 * 179.79158 * 15 14 13 17 17 C 1.34839 * 117.00581 * 174.12424 * 16 15 14 18 18 H 1.07995 * 119.99529 * 5.06557 * 17 16 15 19 19 C 1.38648 * 119.99937 * 185.06336 * 17 16 15 20 20 N 1.31556 * 120.00473 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99524 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47239 * 359.97438 * 21 19 17 23 23 H 1.48505 * 109.47138 * 120.00034 * 21 19 17 24 24 H 1.48505 * 109.47093 * 239.99419 * 21 19 17 25 25 C 1.38564 * 120.02232 * 75.28867 * 11 10 8 26 26 H 1.09004 * 109.47394 * 59.99707 * 1 2 3 27 27 H 1.09001 * 109.47309 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47553 * 299.99867 * 1 2 3 29 29 H 1.08999 * 109.46808 * 60.00270 * 3 2 1 30 30 H 1.08996 * 109.47295 * 299.99949 * 3 2 1 31 31 H 1.08998 * 109.47847 * 300.00318 * 6 4 3 32 32 H 1.09004 * 109.46844 * 60.00333 * 6 4 3 33 33 H 1.09000 * 109.47321 * 179.97438 * 6 4 3 34 34 H 1.09001 * 109.47228 * 54.99707 * 7 4 3 35 35 H 1.09006 * 109.47339 * 295.00349 * 7 4 3 36 36 H 1.08000 * 119.95714 * 359.97438 * 12 11 10 37 37 H 1.08004 * 119.93429 * 180.02562 * 13 12 11 38 38 H 1.08008 * 119.98060 * 180.22828 * 14 13 12 39 39 H 0.96997 * 119.99916 * 180.02562 * 20 19 17 40 40 H 1.08000 * 120.05973 * 0.05186 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.8507 0.5686 0.8427 6 6 3.9962 0.5365 -1.3063 7 6 4.1572 2.5769 0.1264 8 6 5.6536 2.4494 0.2505 9 8 6.1699 1.3570 0.2400 10 8 6.4132 3.5497 0.3738 11 6 7.7425 3.3612 0.5860 12 6 8.2799 3.5648 1.8498 13 6 9.6310 3.3731 2.0670 14 6 10.4504 2.9743 1.0288 15 6 9.9193 2.7743 -0.2388 16 8 10.7252 2.3865 -1.2600 17 6 10.1287 2.0924 -2.4330 18 1 9.0668 2.2485 -2.5527 19 6 10.8786 1.5897 -3.4852 20 7 12.1722 1.4000 -3.3395 21 14 10.0522 1.1830 -5.1104 22 1 8.6013 1.4848 -5.0171 23 1 10.6595 1.9989 -6.1924 24 1 10.2390 -0.2587 -5.4135 25 6 8.5621 2.9654 -0.4588 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.6885 1.8464 0.8900 30 1 1.6885 1.8464 -0.8899 31 1 3.5532 -0.4554 -1.3960 32 1 3.6809 1.1527 -2.1484 33 1 5.0828 0.4508 -1.3061 34 1 3.7602 3.0736 1.0117 35 1 3.9148 3.1645 -0.7592 36 1 7.6411 3.8733 2.6642 37 1 10.0465 3.5317 3.0513 38 1 11.5055 2.8215 1.2020 39 1 12.6968 1.0487 -4.0758 40 1 8.1459 2.8070 -1.4427 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841345736.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:32:48 Heat of formation + Delta-G solvation = -151.777124 kcal Electronic energy + Delta-G solvation = -23225.031389 eV Core-core repulsion = 19584.430643 eV Total energy + Delta-G solvation = -3640.600746 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.38841 -40.64612 -39.35757 -38.58253 -37.39074 -35.77671 -34.36139 -31.57046 -30.72390 -29.45322 -28.21332 -27.46791 -26.45605 -24.51816 -23.41212 -22.25087 -21.06757 -20.12871 -19.54533 -18.55165 -17.75596 -17.61284 -16.99676 -16.89823 -16.83674 -16.15114 -16.05561 -15.90754 -15.57728 -15.19694 -14.90605 -14.53011 -14.52088 -14.16716 -13.76432 -13.39034 -13.15326 -13.11293 -12.95465 -12.76691 -12.57256 -12.46973 -12.24052 -12.17787 -11.97503 -11.90286 -11.78249 -11.55781 -11.37902 -10.87918 -10.56123 -9.81104 -9.17064 -8.55223 -6.24398 0.14322 0.53733 1.08298 1.28555 1.36807 1.46797 1.71684 2.11147 2.70648 2.89518 3.04788 3.36580 3.50983 3.80750 3.94319 3.99585 4.08295 4.18507 4.30775 4.41969 4.43577 4.49642 4.52947 4.57777 4.59751 4.67583 4.78376 4.86052 4.89866 4.92011 4.99863 5.03328 5.22871 5.31320 5.38287 5.44588 5.51261 5.57736 5.92399 6.00732 6.29166 6.77533 6.88882 7.64319 8.67493 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.013414 B = 0.004112 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.905246 B = 6807.738607 C = 8583.320896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.419 6.419 3 C 0.071 3.929 4 C -0.078 4.078 5 H 0.069 0.931 6 C -0.153 4.153 7 C -0.093 4.093 8 C 0.449 3.551 9 O -0.520 6.520 10 O -0.295 6.295 11 C 0.114 3.886 12 C -0.191 4.191 13 C -0.048 4.048 14 C -0.196 4.196 15 C 0.126 3.874 16 O -0.221 6.221 17 C -0.416 4.416 18 H 0.090 0.910 19 C -0.016 4.016 20 N -0.913 5.913 21 Si 1.014 2.986 22 H -0.259 1.259 23 H -0.259 1.259 24 H -0.265 1.265 25 C -0.248 4.248 26 H 0.051 0.949 27 H 0.089 0.911 28 H 0.054 0.946 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.038 0.962 34 H 0.149 0.851 35 H 0.135 0.865 36 H 0.159 0.841 37 H 0.176 0.824 38 H 0.130 0.870 39 H 0.276 0.724 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.998 3.923 8.311 24.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.339 6.339 3 C -0.006 4.006 4 C -0.096 4.096 5 H 0.087 0.913 6 C -0.210 4.210 7 C -0.130 4.130 8 C 0.294 3.706 9 O -0.406 6.406 10 O -0.210 6.210 11 C 0.073 3.927 12 C -0.210 4.210 13 C -0.066 4.066 14 C -0.215 4.215 15 C 0.075 3.925 16 O -0.128 6.128 17 C -0.492 4.492 18 H 0.108 0.892 19 C -0.215 4.215 20 N -0.551 5.551 21 Si 0.833 3.167 22 H -0.183 1.183 23 H -0.184 1.184 24 H -0.190 1.190 25 C -0.268 4.268 26 H 0.070 0.930 27 H 0.108 0.892 28 H 0.073 0.927 29 H 0.094 0.906 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.057 0.943 34 H 0.166 0.834 35 H 0.153 0.847 36 H 0.177 0.823 37 H 0.193 0.807 38 H 0.148 0.852 39 H 0.085 0.915 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -22.300 3.317 8.158 23.976 hybrid contribution 0.197 -0.321 -1.086 1.149 sum -22.104 2.996 7.072 23.400 Atomic orbital electron populations 1.22907 0.79379 1.03583 1.01089 1.87857 1.21478 1.28877 1.95666 1.22545 0.90979 0.84679 1.02353 1.20871 0.94592 0.94712 0.99459 0.91271 1.21895 1.00762 1.01384 0.97000 1.21515 0.82727 0.99798 1.08961 1.25076 0.92307 0.81535 0.71698 1.90726 1.75562 1.28971 1.45368 1.84531 1.17420 1.36942 1.82136 1.18408 0.80680 1.00031 0.93551 1.21119 0.96802 1.08344 0.94738 1.21080 0.91896 0.94668 0.98942 1.20709 1.01578 1.08951 0.90279 1.19721 0.89615 0.93413 0.89783 1.83955 1.34527 1.75301 1.18985 1.21716 0.94728 1.45098 0.87693 0.89223 1.26526 0.96271 0.95573 1.03096 1.70159 1.07113 1.43501 1.34296 0.84604 0.78247 0.78787 0.75019 1.18276 1.18362 1.19011 1.21180 0.94398 1.11175 1.00040 0.93012 0.89220 0.92718 0.90585 0.91197 0.92425 0.91605 0.94337 0.83351 0.84673 0.82341 0.80695 0.85228 0.91517 0.87321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 113.37 1.25 1.55 16 2 O -0.42 -8.00 10.24 -148.98 -1.53 -9.52 16 3 C 0.07 1.02 5.32 71.98 0.38 1.40 16 4 C -0.08 -1.58 2.27 -10.80 -0.02 -1.61 16 5 H 0.07 1.70 7.96 -2.38 -0.02 1.69 16 6 C -0.15 -3.93 8.83 71.98 0.64 -3.30 16 7 C -0.09 -1.64 5.29 29.84 0.16 -1.48 16 8 C 0.45 13.85 7.54 71.23 0.54 14.38 16 9 O -0.52 -20.85 13.40 21.95 0.29 -20.56 16 10 O -0.29 -9.91 10.03 4.53 0.05 -9.86 16 11 C 0.11 4.56 5.18 22.49 0.12 4.68 16 12 C -0.19 -6.34 9.99 22.40 0.22 -6.12 16 13 C -0.05 -1.58 10.03 22.24 0.22 -1.35 16 14 C -0.20 -8.35 9.99 22.40 0.22 -8.12 16 15 C 0.13 6.57 6.65 22.56 0.15 6.72 16 16 O -0.22 -13.78 9.76 -22.79 -0.22 -14.00 16 17 C -0.42 -25.50 9.49 67.92 0.64 -24.85 16 18 H 0.09 5.26 5.20 -2.91 -0.02 5.25 16 19 C -0.02 -0.95 5.49 84.83 0.47 -0.49 16 20 N -0.91 -56.89 13.67 21.61 0.30 -56.59 16 21 Si 1.01 44.70 29.55 68.60 2.03 46.73 16 22 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 23 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 24 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 25 C -0.25 -12.07 8.58 22.49 0.19 -11.88 16 26 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 27 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.06 1.51 7.82 -2.39 -0.02 1.49 16 32 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 33 H 0.04 1.28 5.96 -2.39 -0.01 1.26 16 34 H 0.15 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.14 1.74 8.14 -2.38 -0.02 1.72 16 36 H 0.16 3.93 8.06 -2.91 -0.02 3.91 16 37 H 0.18 3.92 8.06 -2.91 -0.02 3.90 16 38 H 0.13 5.24 8.06 -2.91 -0.02 5.21 16 39 H 0.28 15.59 8.31 -92.71 -0.77 14.82 16 40 H 0.11 5.65 5.64 -2.91 -0.02 5.63 16 Total: -1.00 -80.99 343.82 7.13 -73.86 By element: Atomic # 1 Polarization: 19.37 SS G_CDS: 1.04 Total: 20.41 kcal Atomic # 6 Polarization: -35.64 SS G_CDS: 5.18 Total: -30.46 kcal Atomic # 7 Polarization: -56.89 SS G_CDS: 0.30 Total: -56.59 kcal Atomic # 8 Polarization: -52.54 SS G_CDS: -1.41 Total: -53.94 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -80.99 7.13 -73.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841345736.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.917 kcal (2) G-P(sol) polarization free energy of solvation -80.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds