Wall clock time and date at job start Tue Mar 31 2020 07:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.50700 * 120.00051 * 2 1 4 4 C 1.52993 * 109.47273 * 295.00114 * 3 2 1 5 5 C 1.53000 * 109.47233 * 180.02562 * 4 3 2 6 6 C 1.50700 * 109.47058 * 179.97438 * 5 4 3 7 7 H 1.07992 * 120.00070 * 359.97438 * 6 5 4 8 8 C 1.37881 * 119.99791 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99787 * 0.02562 * 8 6 5 10 10 Si 1.86805 * 119.99970 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.46641 * 60.00483 * 10 8 6 12 12 H 1.48498 * 109.47150 * 180.02562 * 10 8 6 13 13 H 1.48495 * 109.47012 * 300.00786 * 10 8 6 14 14 N 1.28014 * 120.00077 * 179.97438 * 2 1 3 15 15 N 1.40104 * 119.99535 * 0.02562 * 14 2 1 16 16 C 1.46506 * 119.99589 * 179.97438 * 15 14 2 17 17 C 1.50699 * 109.46928 * 179.97438 * 16 15 14 18 18 C 1.38262 * 119.99465 * 269.72318 * 17 16 15 19 19 C 1.38221 * 120.02890 * 179.76993 * 18 17 16 20 20 C 1.38240 * 120.00891 * 0.50578 * 19 18 17 21 21 C 1.38330 * 119.98851 * 359.74508 * 20 19 18 22 22 Cl 1.73598 * 120.01426 * 180.02562 * 21 20 19 23 23 C 1.38193 * 119.99362 * 89.99622 * 17 16 15 24 24 H 1.08999 * 109.47280 * 270.00016 * 1 2 3 25 25 H 1.08997 * 109.47027 * 29.99975 * 1 2 3 26 26 H 1.09000 * 109.47497 * 150.00209 * 1 2 3 27 27 H 1.09001 * 109.46875 * 55.00430 * 3 2 1 28 28 H 1.09004 * 109.46660 * 174.99840 * 3 2 1 29 29 H 1.09007 * 109.47026 * 299.99935 * 4 3 2 30 30 H 1.08997 * 109.47336 * 59.99848 * 4 3 2 31 31 H 1.08999 * 109.46929 * 299.99423 * 5 4 3 32 32 H 1.08997 * 109.47356 * 59.99527 * 5 4 3 33 33 H 0.97011 * 119.99415 * 179.97438 * 9 8 6 34 34 H 0.96999 * 120.00331 * 359.97438 * 15 14 2 35 35 H 1.09004 * 109.47073 * 299.99530 * 16 15 14 36 36 H 1.09000 * 109.47212 * 59.99612 * 16 15 14 37 37 H 1.08000 * 119.98245 * 359.97438 * 18 17 16 38 38 H 1.08000 * 119.99505 * 180.25268 * 19 18 17 39 39 H 1.07998 * 120.00377 * 179.77005 * 20 19 18 40 40 H 1.08006 * 120.00895 * 359.96140 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 1.9875 2.0516 -1.3073 5 6 2.7530 3.3763 -1.3075 6 6 2.4847 4.1113 -2.5955 7 1 1.8336 3.6769 -3.3396 8 6 3.0704 5.3385 -2.8238 9 7 3.8636 5.8672 -1.9179 10 14 2.7383 6.2493 -4.4206 11 1 1.2830 6.5179 -4.5437 12 1 3.4812 7.5350 -4.4208 13 1 3.1870 5.4186 -5.5668 14 7 2.1470 -1.1086 0.0005 15 7 1.4464 -2.3219 0.0005 16 6 2.1790 -3.5907 0.0005 17 6 1.1996 -4.7361 0.0011 18 6 0.7553 -5.2649 1.1989 19 6 -0.1466 -6.3124 1.2003 20 6 -0.5968 -6.8387 0.0039 21 6 -0.1487 -6.3134 -1.1947 22 17 -0.7142 -6.9734 -2.6975 23 6 0.7502 -5.2614 -1.1954 24 1 -0.3634 0.0000 1.0276 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3634 -0.8900 -0.5138 27 1 1.9317 1.9144 0.8419 28 1 3.3287 1.1078 0.0896 29 1 2.3163 1.4422 -2.1491 30 1 0.9193 2.2488 -1.3969 31 1 2.4246 3.9859 -0.4657 32 1 3.8212 3.1787 -1.2181 33 1 4.2759 6.7305 -2.0787 34 1 0.4764 -2.3219 0.0005 35 1 2.8056 -3.6485 -0.8896 36 1 2.8057 -3.6484 0.8904 37 1 1.1106 -4.8572 2.1337 38 1 -0.4964 -6.7223 2.1362 39 1 -1.2986 -7.6595 0.0051 40 1 1.1002 -4.8507 -2.1311 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841629572.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:44:59 Heat of formation + Delta-G solvation = 36.988995 kcal Electronic energy + Delta-G solvation = -19584.761917 eV Core-core repulsion = 16425.348600 eV Total energy + Delta-G solvation = -3159.413317 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.119 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.90767 -37.77506 -36.88967 -34.95991 -33.56968 -32.04971 -31.21170 -30.34118 -28.18066 -27.28609 -25.23907 -23.26941 -23.13289 -21.75064 -20.27970 -19.00666 -17.49023 -16.45283 -16.09044 -15.99578 -15.72734 -15.38114 -14.50345 -14.34592 -14.09803 -13.92539 -13.81304 -13.40438 -13.23225 -13.06491 -12.28524 -12.00427 -11.92884 -11.87019 -11.83201 -11.56481 -11.30856 -11.20426 -11.01081 -10.73731 -10.51838 -10.48717 -9.74700 -9.55650 -9.46236 -9.25922 -9.16076 -9.03567 -8.29417 -7.66971 -5.94971 -3.96883 0.63213 0.75376 1.70848 2.57941 2.90783 3.36552 3.40740 3.42766 3.44079 4.21834 4.34749 4.50164 4.58747 4.77184 4.86327 5.02970 5.05257 5.23883 5.32524 5.40659 5.43842 5.50273 5.59766 5.64972 5.74299 5.83871 6.01104 6.07186 6.09407 6.20584 6.29735 6.40181 6.73120 6.91163 6.96584 7.18633 7.26962 7.73838 7.89708 8.06059 8.48719 8.71898 9.10182 9.66677 11.16285 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.022982 B = 0.002212 C = 0.002076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.072820 B =12656.861938 C =13487.137687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.074 3.926 3 C -0.058 4.058 4 C -0.102 4.102 5 C 0.021 3.979 6 C -0.519 4.519 7 H 0.054 0.946 8 C 0.056 3.944 9 N -0.896 5.896 10 Si 0.891 3.109 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.277 1.277 14 N -0.247 5.247 15 N -0.676 5.676 16 C 0.203 3.797 17 C -0.089 4.089 18 C -0.095 4.095 19 C -0.110 4.110 20 C -0.106 4.106 21 C -0.038 4.038 22 Cl -0.069 7.069 23 C -0.091 4.091 24 H 0.071 0.929 25 H 0.083 0.917 26 H 0.055 0.945 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.048 0.952 30 H 0.049 0.951 31 H 0.017 0.983 32 H 0.017 0.983 33 H 0.260 0.740 34 H 0.374 0.626 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.132 0.868 38 H 0.134 0.866 39 H 0.133 0.867 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.371 -26.950 6.915 29.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.120 4.120 3 C -0.097 4.097 4 C -0.141 4.141 5 C -0.016 4.016 6 C -0.558 4.558 7 H 0.072 0.928 8 C -0.145 4.145 9 N -0.535 5.535 10 Si 0.719 3.281 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.203 1.203 14 N -0.053 5.053 15 N -0.416 5.416 16 C 0.078 3.922 17 C -0.091 4.091 18 C -0.114 4.114 19 C -0.128 4.128 20 C -0.125 4.125 21 C -0.064 4.064 22 Cl -0.040 7.040 23 C -0.110 4.110 24 H 0.089 0.911 25 H 0.102 0.898 26 H 0.074 0.926 27 H 0.094 0.906 28 H 0.093 0.907 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.035 0.965 32 H 0.035 0.965 33 H 0.070 0.930 34 H 0.213 0.787 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.150 0.850 38 H 0.152 0.848 39 H 0.151 0.849 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -8.257 -27.431 6.818 29.447 hybrid contribution -1.474 0.597 -1.074 1.918 sum -9.730 -26.834 5.745 29.116 Atomic orbital electron populations 1.21202 0.94020 1.03231 1.02391 1.24845 0.93832 0.93874 0.99496 1.20515 0.99469 0.89319 1.00424 1.21606 1.00439 0.98163 0.93893 1.19106 0.95362 0.90205 0.96951 1.21232 1.28295 1.03314 1.02943 0.92822 1.25022 0.95263 0.97571 0.96641 1.69959 1.31328 1.17992 1.34254 0.86680 0.78301 0.79016 0.84123 1.20291 1.21330 1.20295 1.73795 1.26544 0.91985 1.12938 1.47882 1.05595 1.00138 1.87955 1.19699 0.91671 0.78729 1.02056 1.19932 0.98894 0.97635 0.92633 1.21267 0.96331 0.95769 0.98030 1.21151 0.97342 0.96577 0.97764 1.21127 1.00217 1.00361 0.90814 1.20945 0.99996 0.98005 0.87471 1.98387 1.88274 1.85145 1.32218 1.21072 0.96009 0.94838 0.99063 0.91086 0.89795 0.92580 0.90565 0.90728 0.93337 0.93221 0.96487 0.96469 0.93009 0.78735 0.91744 0.91647 0.85045 0.84823 0.84864 0.84596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.46 36.00 0.34 -1.54 16 2 C 0.07 1.14 6.55 -78.91 -0.52 0.62 16 3 C -0.06 -0.99 5.60 -27.89 -0.16 -1.14 16 4 C -0.10 -2.09 5.03 -26.73 -0.13 -2.22 16 5 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 6 C -0.52 -14.81 9.11 -34.44 -0.31 -15.12 16 7 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 8 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 9 N -0.90 -27.09 13.29 55.43 0.74 -26.35 16 10 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 13 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 14 N -0.25 -3.86 11.38 35.60 0.41 -3.46 16 15 N -0.68 -8.52 6.46 -11.65 -0.08 -8.59 16 16 C 0.20 2.08 6.80 -5.19 -0.04 2.04 16 17 C -0.09 -0.77 5.25 -104.63 -0.55 -1.32 16 18 C -0.10 -0.70 9.70 -39.58 -0.38 -1.08 16 19 C -0.11 -0.70 10.05 -39.59 -0.40 -1.10 16 20 C -0.11 -0.75 9.83 -39.55 -0.39 -1.14 16 21 C -0.04 -0.32 6.32 -39.50 -0.25 -0.57 16 22 Cl -0.07 -0.59 28.96 -51.86 -1.50 -2.09 16 23 C -0.09 -0.80 9.49 -39.55 -0.38 -1.18 16 24 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.08 1.08 6.91 -51.93 -0.36 0.72 16 26 H 0.06 0.65 6.31 -51.93 -0.33 0.33 16 27 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 28 H 0.07 1.33 8.11 -51.93 -0.42 0.91 16 29 H 0.05 1.02 8.14 -51.92 -0.42 0.60 16 30 H 0.05 0.97 7.01 -51.93 -0.36 0.61 16 31 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.26 7.44 8.31 -40.81 -0.34 7.10 16 34 H 0.37 4.36 6.15 -182.60 -1.12 3.24 16 35 H 0.06 0.69 8.09 -51.93 -0.42 0.27 16 36 H 0.07 0.65 8.08 -51.93 -0.42 0.23 16 37 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 38 H 0.13 0.54 8.06 -52.49 -0.42 0.11 16 39 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 40 H 0.14 1.19 8.06 -52.48 -0.42 0.76 16 LS Contribution 354.21 15.07 5.34 5.34 Total: -1.00 -31.11 354.21 -10.30 -41.41 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -6.78 Total: -1.25 kcal Atomic # 6 Polarization: -18.42 SS G_CDS: -3.40 Total: -21.82 kcal Atomic # 7 Polarization: -39.46 SS G_CDS: 1.07 Total: -38.40 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -1.50 Total: -2.09 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.11 -10.30 -41.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841629572.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.395 kcal (2) G-P(sol) polarization free energy of solvation -31.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds