Wall clock time and date at job start Tue Mar 31 2020 07:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.50700 * 120.00051 * 2 1 4 4 C 1.52993 * 109.47273 * 295.00114 * 3 2 1 5 5 C 1.53000 * 109.47233 * 180.02562 * 4 3 2 6 6 C 1.50700 * 109.47058 * 179.97438 * 5 4 3 7 7 H 1.07992 * 120.00070 * 359.97438 * 6 5 4 8 8 C 1.37881 * 119.99791 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99787 * 0.02562 * 8 6 5 10 10 Si 1.86805 * 119.99970 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.46641 * 60.00483 * 10 8 6 12 12 H 1.48498 * 109.47150 * 180.02562 * 10 8 6 13 13 H 1.48495 * 109.47012 * 300.00786 * 10 8 6 14 14 N 1.28014 * 120.00077 * 179.97438 * 2 1 3 15 15 N 1.40104 * 119.99535 * 0.02562 * 14 2 1 16 16 C 1.46506 * 119.99589 * 179.97438 * 15 14 2 17 17 C 1.50699 * 109.46928 * 179.97438 * 16 15 14 18 18 C 1.38262 * 119.99465 * 269.72318 * 17 16 15 19 19 C 1.38221 * 120.02890 * 179.76993 * 18 17 16 20 20 C 1.38240 * 120.00891 * 0.50578 * 19 18 17 21 21 C 1.38330 * 119.98851 * 359.74508 * 20 19 18 22 22 Cl 1.73598 * 120.01426 * 180.02562 * 21 20 19 23 23 C 1.38193 * 119.99362 * 89.99622 * 17 16 15 24 24 H 1.08999 * 109.47280 * 270.00016 * 1 2 3 25 25 H 1.08997 * 109.47027 * 29.99975 * 1 2 3 26 26 H 1.09000 * 109.47497 * 150.00209 * 1 2 3 27 27 H 1.09001 * 109.46875 * 55.00430 * 3 2 1 28 28 H 1.09004 * 109.46660 * 174.99840 * 3 2 1 29 29 H 1.09007 * 109.47026 * 299.99935 * 4 3 2 30 30 H 1.08997 * 109.47336 * 59.99848 * 4 3 2 31 31 H 1.08999 * 109.46929 * 299.99423 * 5 4 3 32 32 H 1.08997 * 109.47356 * 59.99527 * 5 4 3 33 33 H 0.97011 * 119.99415 * 179.97438 * 9 8 6 34 34 H 0.96999 * 120.00331 * 359.97438 * 15 14 2 35 35 H 1.09004 * 109.47073 * 299.99530 * 16 15 14 36 36 H 1.09000 * 109.47212 * 59.99612 * 16 15 14 37 37 H 1.08000 * 119.98245 * 359.97438 * 18 17 16 38 38 H 1.08000 * 119.99505 * 180.25268 * 19 18 17 39 39 H 1.07998 * 120.00377 * 179.77005 * 20 19 18 40 40 H 1.08006 * 120.00895 * 359.96140 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 1.9875 2.0516 -1.3073 5 6 2.7530 3.3763 -1.3075 6 6 2.4847 4.1113 -2.5955 7 1 1.8336 3.6769 -3.3396 8 6 3.0704 5.3385 -2.8238 9 7 3.8636 5.8672 -1.9179 10 14 2.7383 6.2493 -4.4206 11 1 1.2830 6.5179 -4.5437 12 1 3.4812 7.5350 -4.4208 13 1 3.1870 5.4186 -5.5668 14 7 2.1470 -1.1086 0.0005 15 7 1.4464 -2.3219 0.0005 16 6 2.1790 -3.5907 0.0005 17 6 1.1996 -4.7361 0.0011 18 6 0.7553 -5.2649 1.1989 19 6 -0.1466 -6.3124 1.2003 20 6 -0.5968 -6.8387 0.0039 21 6 -0.1487 -6.3134 -1.1947 22 17 -0.7142 -6.9734 -2.6975 23 6 0.7502 -5.2614 -1.1954 24 1 -0.3634 0.0000 1.0276 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3634 -0.8900 -0.5138 27 1 1.9317 1.9144 0.8419 28 1 3.3287 1.1078 0.0896 29 1 2.3163 1.4422 -2.1491 30 1 0.9193 2.2488 -1.3969 31 1 2.4246 3.9859 -0.4657 32 1 3.8212 3.1787 -1.2181 33 1 4.2759 6.7305 -2.0787 34 1 0.4764 -2.3219 0.0005 35 1 2.8056 -3.6485 -0.8896 36 1 2.8057 -3.6484 0.8904 37 1 1.1106 -4.8572 2.1337 38 1 -0.4964 -6.7223 2.1362 39 1 -1.2986 -7.6595 0.0051 40 1 1.1002 -4.8507 -2.1311 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841629572.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:44:58 Heat of formation + Delta-G solvation = 21.053357 kcal Electronic energy + Delta-G solvation = -19585.452938 eV Core-core repulsion = 16425.348600 eV Total energy + Delta-G solvation = -3160.104338 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.119 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.51798 -38.91438 -37.54250 -36.37064 -35.04077 -33.64556 -31.82038 -31.47662 -29.23203 -28.87122 -26.39243 -24.95490 -23.70650 -22.44388 -22.06695 -20.18591 -18.50355 -18.05425 -17.22228 -16.72868 -16.57367 -16.49000 -16.22097 -15.60147 -15.13812 -14.80260 -14.71838 -14.42309 -14.19229 -14.08546 -13.85843 -13.60761 -13.17459 -12.81632 -12.65202 -12.55222 -12.52642 -12.46271 -12.41109 -12.36847 -11.85494 -11.84430 -11.41737 -11.33319 -11.11383 -10.73060 -10.50327 -10.04022 -9.76302 -8.72835 -8.15873 -6.26516 0.03540 0.17328 1.09560 1.39290 1.42076 1.44733 1.52583 2.07434 2.43970 2.70485 3.16842 3.54083 3.80769 3.88063 4.03320 4.16426 4.20744 4.25544 4.35616 4.45094 4.48599 4.61711 4.70112 4.74746 4.77413 4.88421 4.91636 5.03728 5.17177 5.20521 5.28876 5.29703 5.38022 5.45543 5.58463 5.67273 5.75701 5.85348 5.92202 6.29395 6.31751 6.90598 7.42073 7.63666 8.95443 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.022982 B = 0.002212 C = 0.002076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.072820 B =12656.861938 C =13487.137687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.065 3.935 3 C -0.049 4.049 4 C -0.086 4.086 5 C 0.023 3.977 6 C -0.543 4.543 7 H 0.058 0.942 8 C -0.001 4.001 9 N -0.933 5.933 10 Si 0.963 3.037 11 H -0.265 1.265 12 H -0.283 1.283 13 H -0.270 1.270 14 N -0.268 5.268 15 N -0.669 5.669 16 C 0.203 3.797 17 C -0.095 4.095 18 C -0.095 4.095 19 C -0.104 4.104 20 C -0.106 4.106 21 C -0.050 4.050 22 Cl -0.075 7.075 23 C -0.102 4.102 24 H 0.088 0.912 25 H 0.080 0.920 26 H 0.065 0.935 27 H 0.086 0.914 28 H 0.061 0.939 29 H 0.039 0.961 30 H 0.061 0.939 31 H -0.001 1.001 32 H -0.011 1.011 33 H 0.263 0.737 34 H 0.380 0.620 35 H 0.056 0.944 36 H 0.070 0.930 37 H 0.145 0.855 38 H 0.163 0.837 39 H 0.151 0.849 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.991 -28.230 7.158 31.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.130 4.130 3 C -0.088 4.088 4 C -0.125 4.125 5 C -0.014 4.014 6 C -0.581 4.581 7 H 0.076 0.924 8 C -0.199 4.199 9 N -0.573 5.573 10 Si 0.787 3.213 11 H -0.190 1.190 12 H -0.208 1.208 13 H -0.195 1.195 14 N -0.074 5.074 15 N -0.410 5.410 16 C 0.079 3.921 17 C -0.097 4.097 18 C -0.114 4.114 19 C -0.122 4.122 20 C -0.124 4.124 21 C -0.076 4.076 22 Cl -0.047 7.047 23 C -0.121 4.121 24 H 0.107 0.893 25 H 0.099 0.901 26 H 0.084 0.916 27 H 0.104 0.896 28 H 0.080 0.920 29 H 0.058 0.942 30 H 0.080 0.920 31 H 0.017 0.983 32 H 0.008 0.992 33 H 0.072 0.928 34 H 0.219 0.781 35 H 0.074 0.926 36 H 0.088 0.912 37 H 0.163 0.837 38 H 0.180 0.820 39 H 0.169 0.831 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -9.887 -28.729 7.061 31.193 hybrid contribution -0.937 0.907 -1.100 1.706 sum -10.825 -27.822 5.961 30.443 Atomic orbital electron populations 1.21182 0.91870 1.03522 1.03634 1.24611 0.95046 0.92855 1.00490 1.20282 0.99154 0.90552 0.98860 1.21349 1.00108 0.95543 0.95498 1.19025 0.94339 0.92566 0.95477 1.21695 1.28429 1.03973 1.03994 0.92351 1.25969 0.94911 0.98607 1.00422 1.70093 1.32292 1.18500 1.36420 0.85541 0.78702 0.77583 0.79464 1.19016 1.20840 1.19479 1.73674 1.28041 0.93111 1.12594 1.47975 1.06001 0.99693 1.87321 1.19766 0.92087 0.78385 1.01857 1.19764 0.99260 0.97454 0.93227 1.21471 0.96167 0.95841 0.97914 1.21478 0.96327 0.95732 0.98663 1.21421 1.00047 1.00512 0.90450 1.21066 1.00419 0.98295 0.87838 1.98382 1.88316 1.85180 1.32777 1.21065 0.96632 0.95440 0.98989 0.89302 0.90068 0.91646 0.89582 0.92024 0.94225 0.92029 0.98250 0.99225 0.92822 0.78079 0.92606 0.91158 0.83744 0.81954 0.83083 0.85329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.33 9.46 71.23 0.67 -2.66 16 2 C 0.06 1.93 6.55 46.53 0.30 2.23 16 3 C -0.05 -1.68 5.60 29.85 0.17 -1.51 16 4 C -0.09 -3.55 5.03 30.59 0.15 -3.40 16 5 C 0.02 1.23 4.97 29.85 0.15 1.38 16 6 C -0.54 -31.30 9.11 25.60 0.23 -31.06 16 7 H 0.06 3.23 7.74 -2.91 -0.02 3.20 16 8 C 0.00 -0.09 5.46 84.66 0.46 0.38 16 9 N -0.93 -57.32 13.29 21.45 0.28 -57.04 16 10 Si 0.96 44.73 29.54 68.60 2.03 46.76 16 11 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 12 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 13 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 14 N -0.27 -8.20 11.38 -41.20 -0.47 -8.66 16 15 N -0.67 -16.13 6.46 -190.77 -1.23 -17.37 16 16 C 0.20 4.01 6.80 85.63 0.58 4.59 16 17 C -0.10 -1.53 5.25 -19.87 -0.10 -1.64 16 18 C -0.10 -1.17 9.70 22.27 0.22 -0.95 16 19 C -0.10 -1.01 10.05 22.27 0.22 -0.79 16 20 C -0.11 -1.24 9.83 22.29 0.22 -1.02 16 21 C -0.05 -0.78 6.32 22.32 0.14 -0.64 16 22 Cl -0.08 -1.23 28.96 -2.72 -0.08 -1.30 16 23 C -0.10 -1.74 9.49 22.29 0.21 -1.53 16 24 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 25 H 0.08 1.94 6.91 -2.39 -0.02 1.93 16 26 H 0.06 1.39 6.31 -2.39 -0.02 1.38 16 27 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 28 H 0.06 2.25 8.11 -2.39 -0.02 2.23 16 29 H 0.04 1.68 8.14 -2.38 -0.02 1.66 16 30 H 0.06 2.38 7.01 -2.39 -0.02 2.36 16 31 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 32 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 33 H 0.26 15.20 8.31 -92.70 -0.77 14.43 16 34 H 0.38 8.25 6.15 -213.32 -1.31 6.94 16 35 H 0.06 1.19 8.09 -2.38 -0.02 1.17 16 36 H 0.07 1.32 8.08 -2.39 -0.02 1.30 16 37 H 0.14 1.38 8.06 -2.91 -0.02 1.36 16 38 H 0.16 0.64 8.06 -2.91 -0.02 0.62 16 39 H 0.15 1.19 8.06 -2.91 -0.02 1.17 16 40 H 0.13 2.29 8.06 -2.91 -0.02 2.26 16 Total: -1.00 -66.95 354.21 3.88 -63.07 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -0.28 Total: 11.16 kcal Atomic # 6 Polarization: -40.25 SS G_CDS: 3.63 Total: -36.62 kcal Atomic # 7 Polarization: -81.65 SS G_CDS: -1.42 Total: -83.07 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Atomic # 17 Polarization: -1.23 SS G_CDS: -0.08 Total: -1.30 kcal Total: -66.95 3.88 -63.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841629572.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.126 kcal (2) G-P(sol) polarization free energy of solvation -66.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds