Wall clock time and date at job start Tue Mar 31 2020 06:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47236 * 2 1 4 4 H 1.09004 * 109.46968 * 305.47493 * 3 2 1 5 5 C 1.52995 * 109.47297 * 185.47336 * 3 2 1 6 6 O 1.45203 * 109.47226 * 175.00055 * 5 3 2 7 7 C 1.34761 * 117.00116 * 179.97438 * 6 5 3 8 8 O 1.21517 * 119.99901 * 0.02562 * 7 6 5 9 9 C 1.47394 * 120.00098 * 180.02562 * 7 6 5 10 10 C 1.39724 * 120.20309 * 359.97438 * 9 7 6 11 11 C 1.37807 * 119.91351 * 180.02562 * 10 9 7 12 12 C 1.38583 * 120.32982 * 0.02562 * 11 10 9 13 13 C 1.38015 * 120.41684 * 0.02562 * 12 11 10 14 14 C 1.38837 * 120.07821 * 359.67800 * 13 12 11 15 15 O 1.35500 * 120.16621 * 180.31686 * 14 13 12 16 16 C 1.34817 * 117.00512 * 5.68389 * 15 14 13 17 17 H 1.07996 * 119.99414 * 5.15425 * 16 15 14 18 18 C 1.38701 * 119.99909 * 185.15227 * 16 15 14 19 19 N 1.31514 * 120.00519 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99661 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47295 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47008 * 119.99832 * 20 18 16 23 23 H 1.48498 * 109.47211 * 240.00307 * 20 18 16 24 24 O 1.42899 * 109.46989 * 65.46857 * 3 2 1 25 25 C 1.42895 * 114.00510 * 259.66910 * 24 3 2 26 26 H 1.08998 * 109.47246 * 294.72415 * 1 2 3 27 27 H 1.09000 * 109.47449 * 174.72259 * 1 2 3 28 28 H 1.08998 * 109.46947 * 54.72351 * 1 2 3 29 29 H 1.08993 * 109.47120 * 120.00366 * 2 1 3 30 30 H 1.09002 * 109.46972 * 240.00728 * 2 1 3 31 31 H 1.09002 * 109.47063 * 294.99912 * 5 3 2 32 32 H 1.09003 * 109.47363 * 55.00127 * 5 3 2 33 33 H 1.08004 * 120.04658 * 359.97438 * 10 9 7 34 34 H 1.08002 * 119.83083 * 179.97438 * 11 10 9 35 35 H 1.08006 * 119.78981 * 179.97438 * 12 11 10 36 36 H 1.08003 * 119.96370 * 179.97438 * 13 12 11 37 37 H 0.96999 * 119.99933 * 180.02562 * 19 18 16 38 38 H 1.09001 * 109.47077 * 294.52588 * 25 24 3 39 39 H 1.09003 * 109.46970 * 54.51953 * 25 24 3 40 40 H 1.09004 * 109.47288 * 174.52086 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5988 1.9838 -0.8369 5 6 3.5638 1.4447 -0.1376 6 8 4.0371 2.8123 -0.2565 7 6 5.3666 2.9905 -0.3858 8 8 6.1100 2.0294 -0.3993 9 6 5.9190 4.3513 -0.5109 10 6 5.0680 5.4594 -0.4964 11 6 5.5909 6.7290 -0.6143 12 6 6.9579 6.9132 -0.7479 13 6 7.8108 5.8283 -0.7649 14 6 7.3031 4.5420 -0.6412 15 8 8.1394 3.4760 -0.6513 16 6 9.4623 3.7358 -0.6659 17 1 9.8134 4.7539 -0.5851 18 6 10.3720 2.6956 -0.7846 19 7 9.9444 1.4559 -0.8834 20 14 12.2049 3.0558 -0.8055 21 1 12.4233 4.5194 -0.6811 22 1 12.8591 2.3598 0.3315 23 1 12.7894 2.5745 -2.0830 24 8 1.6714 2.0780 1.2257 25 6 0.5241 2.9233 1.1201 26 1 -0.3634 0.4298 0.9334 27 1 -0.3634 -1.0233 -0.0945 28 1 -0.3633 0.5935 -0.8390 29 1 1.8933 -0.5139 0.8899 30 1 1.8933 -0.5137 -0.8901 31 1 4.0088 0.9815 0.7431 32 1 3.8492 0.8828 -1.0270 33 1 4.0018 5.3212 -0.3938 34 1 4.9319 7.5846 -0.6034 35 1 7.3583 7.9121 -0.8401 36 1 8.8750 5.9803 -0.8698 37 1 10.5807 0.7285 -0.9661 38 1 0.7533 3.7672 0.4694 39 1 -0.3073 2.3566 0.7009 40 1 0.2513 3.2907 2.1094 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842071384.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:36 Heat of formation + Delta-G solvation = -136.548954 kcal Electronic energy + Delta-G solvation = -23520.121699 eV Core-core repulsion = 19880.181296 eV Total energy + Delta-G solvation = -3639.940403 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.85284 -38.90542 -38.16582 -36.40952 -35.41634 -33.53901 -32.40921 -30.81724 -29.48377 -28.95363 -26.41064 -25.47471 -24.15286 -22.80850 -21.53377 -21.22074 -20.10920 -18.06979 -17.49597 -17.10936 -16.57994 -15.98191 -15.59182 -15.31124 -14.83149 -14.57505 -14.36844 -14.08876 -13.81337 -13.70424 -13.50622 -13.19733 -12.78725 -12.56500 -12.50667 -12.04838 -11.90446 -11.75208 -11.47884 -11.34229 -11.17181 -11.08948 -10.93646 -10.80415 -10.72314 -10.46736 -10.04683 -9.78686 -9.58971 -9.20759 -8.93167 -8.31632 -7.37509 -6.51197 -4.10677 1.61823 2.31368 3.09386 3.09778 3.15860 3.23941 3.48713 3.71435 3.88960 4.56201 4.71974 4.79404 4.89902 5.04948 5.10811 5.14976 5.19003 5.34940 5.43533 5.48750 5.54536 5.56802 5.61162 5.65766 5.74021 5.75137 5.86600 5.90586 6.03830 6.13324 6.15648 6.57872 6.65925 6.90591 7.01481 7.11819 7.15160 7.23505 7.31424 7.66462 7.87597 8.75593 8.89330 9.58913 10.62798 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.018103 B = 0.003986 C = 0.003327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.296401 B = 7022.913094 C = 8414.153486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.141 4.141 3 C 0.092 3.908 4 H 0.072 0.928 5 C 0.067 3.933 6 O -0.362 6.362 7 C 0.498 3.502 8 O -0.479 6.479 9 C -0.215 4.215 10 C -0.015 4.015 11 C -0.235 4.235 12 C -0.044 4.044 13 C -0.239 4.239 14 C 0.191 3.809 15 O -0.125 6.125 16 C -0.402 4.402 17 H 0.096 0.904 18 C 0.044 3.956 19 N -0.832 5.832 20 Si 0.943 3.057 21 H -0.265 1.265 22 H -0.274 1.274 23 H -0.274 1.274 24 O -0.375 6.375 25 C 0.028 3.972 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.053 0.947 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.123 0.877 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.134 0.866 37 H 0.272 0.728 38 H 0.043 0.957 39 H 0.042 0.958 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.192 2.929 0.620 15.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.179 4.179 3 C 0.034 3.966 4 H 0.090 0.910 5 C -0.007 4.007 6 O -0.281 6.281 7 C 0.343 3.657 8 O -0.365 6.365 9 C -0.218 4.218 10 C -0.033 4.033 11 C -0.254 4.254 12 C -0.063 4.063 13 C -0.258 4.258 14 C 0.132 3.868 15 O -0.023 6.023 16 C -0.478 4.478 17 H 0.114 0.886 18 C -0.164 4.164 19 N -0.463 5.463 20 Si 0.767 3.233 21 H -0.189 1.189 22 H -0.199 1.199 23 H -0.200 1.200 24 O -0.294 6.294 25 C -0.068 4.068 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.097 0.903 33 H 0.141 0.859 34 H 0.130 0.870 35 H 0.130 0.870 36 H 0.152 0.848 37 H 0.082 0.918 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -14.783 2.031 0.766 14.942 hybrid contribution 0.790 0.173 -0.258 0.849 sum -13.993 2.203 0.509 14.175 Atomic orbital electron populations 1.21811 0.95254 1.01928 1.01906 1.21918 0.96623 0.95868 1.03500 1.22203 0.93016 0.93511 0.87834 0.91003 1.23059 0.92682 0.82177 1.02826 1.86508 1.26038 1.30442 1.85080 1.21093 0.79630 0.90389 0.74560 1.90995 1.58711 1.41871 1.44928 1.18030 0.90900 0.90065 1.22815 1.20949 0.98394 0.91325 0.92651 1.20533 0.95088 0.96274 1.13507 1.20960 0.93365 0.97646 0.94287 1.21116 1.00935 0.91657 1.12099 1.19245 0.88952 0.87911 0.90719 1.84163 1.16928 1.27496 1.73756 1.21580 0.78161 0.95368 1.52673 0.88618 1.25418 1.00546 0.94410 0.95979 1.70123 1.35432 0.98810 1.41983 0.85626 0.80221 0.79041 0.78412 1.18880 1.19932 1.19953 1.87957 1.47133 1.62682 1.31619 1.22887 0.87873 0.93550 1.02532 0.92153 0.92344 0.92804 0.90529 0.90517 0.90708 0.90307 0.85861 0.87018 0.86974 0.84825 0.91774 0.93805 0.93931 0.89922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 8.71 37.16 0.32 -0.93 16 2 C -0.14 -1.43 5.64 -26.73 -0.15 -1.58 16 3 C 0.09 1.17 2.56 -26.73 -0.07 1.10 16 4 H 0.07 0.83 7.70 -51.93 -0.40 0.43 16 5 C 0.07 1.10 5.14 37.16 0.19 1.29 16 6 O -0.36 -7.03 9.44 -43.44 -0.41 -7.44 16 7 C 0.50 11.70 7.89 34.46 0.27 11.97 16 8 O -0.48 -13.21 14.96 -26.60 -0.40 -13.61 16 9 C -0.22 -4.92 5.89 -104.83 -0.62 -5.54 16 10 C -0.01 -0.28 9.61 -39.18 -0.38 -0.65 16 11 C -0.24 -3.99 10.02 -39.61 -0.40 -4.38 16 12 C -0.04 -0.78 10.03 -39.54 -0.40 -1.18 16 13 C -0.24 -5.14 9.13 -39.44 -0.36 -5.50 16 14 C 0.19 4.80 6.66 -38.57 -0.26 4.54 16 15 O -0.13 -3.70 7.84 -21.01 -0.16 -3.86 16 16 C -0.40 -11.30 9.45 30.90 0.29 -11.01 16 17 H 0.10 2.44 5.29 -52.49 -0.28 2.16 16 18 C 0.04 1.23 5.49 -17.52 -0.10 1.13 16 19 N -0.83 -24.84 13.67 55.48 0.76 -24.08 16 20 Si 0.94 20.30 29.55 -169.99 -5.02 15.28 16 21 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 22 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 23 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 24 O -0.38 -5.12 10.12 -38.80 -0.39 -5.51 16 25 C 0.03 0.28 10.37 101.05 1.05 1.33 16 26 H 0.06 0.50 6.69 -51.93 -0.35 0.16 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.12 1.99 7.61 -52.48 -0.40 1.59 16 34 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 35 H 0.11 1.60 8.06 -52.48 -0.42 1.18 16 36 H 0.13 2.80 5.71 -52.48 -0.30 2.51 16 37 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 38 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.04 0.34 5.95 -51.93 -0.31 0.03 16 40 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 341.97 15.07 5.15 5.15 Total: -1.00 -33.94 341.97 -6.46 -40.40 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -5.39 Total: 3.08 kcal Atomic # 6 Polarization: -8.82 SS G_CDS: -0.59 Total: -9.42 kcal Atomic # 7 Polarization: -24.84 SS G_CDS: 0.76 Total: -24.08 kcal Atomic # 8 Polarization: -29.05 SS G_CDS: -1.37 Total: -30.42 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.94 -6.46 -40.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842071384.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.146 kcal (2) G-P(sol) polarization free energy of solvation -33.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds