Wall clock time and date at job start Tue Mar 31 2020 06:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47236 * 2 1 4 4 H 1.09004 * 109.46968 * 305.47493 * 3 2 1 5 5 C 1.52995 * 109.47297 * 185.47336 * 3 2 1 6 6 O 1.45203 * 109.47226 * 175.00055 * 5 3 2 7 7 C 1.34761 * 117.00116 * 179.97438 * 6 5 3 8 8 O 1.21517 * 119.99901 * 0.02562 * 7 6 5 9 9 C 1.47394 * 120.00098 * 180.02562 * 7 6 5 10 10 C 1.39724 * 120.20309 * 359.97438 * 9 7 6 11 11 C 1.37807 * 119.91351 * 180.02562 * 10 9 7 12 12 C 1.38583 * 120.32982 * 0.02562 * 11 10 9 13 13 C 1.38015 * 120.41684 * 0.02562 * 12 11 10 14 14 C 1.38837 * 120.07821 * 359.67800 * 13 12 11 15 15 O 1.35500 * 120.16621 * 180.31686 * 14 13 12 16 16 C 1.34817 * 117.00512 * 5.68389 * 15 14 13 17 17 H 1.07996 * 119.99414 * 5.15425 * 16 15 14 18 18 C 1.38701 * 119.99909 * 185.15227 * 16 15 14 19 19 N 1.31514 * 120.00519 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99661 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47295 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47008 * 119.99832 * 20 18 16 23 23 H 1.48498 * 109.47211 * 240.00307 * 20 18 16 24 24 O 1.42899 * 109.46989 * 65.46857 * 3 2 1 25 25 C 1.42895 * 114.00510 * 259.66910 * 24 3 2 26 26 H 1.08998 * 109.47246 * 294.72415 * 1 2 3 27 27 H 1.09000 * 109.47449 * 174.72259 * 1 2 3 28 28 H 1.08998 * 109.46947 * 54.72351 * 1 2 3 29 29 H 1.08993 * 109.47120 * 120.00366 * 2 1 3 30 30 H 1.09002 * 109.46972 * 240.00728 * 2 1 3 31 31 H 1.09002 * 109.47063 * 294.99912 * 5 3 2 32 32 H 1.09003 * 109.47363 * 55.00127 * 5 3 2 33 33 H 1.08004 * 120.04658 * 359.97438 * 10 9 7 34 34 H 1.08002 * 119.83083 * 179.97438 * 11 10 9 35 35 H 1.08006 * 119.78981 * 179.97438 * 12 11 10 36 36 H 1.08003 * 119.96370 * 179.97438 * 13 12 11 37 37 H 0.96999 * 119.99933 * 180.02562 * 19 18 16 38 38 H 1.09001 * 109.47077 * 294.52588 * 25 24 3 39 39 H 1.09003 * 109.46970 * 54.51953 * 25 24 3 40 40 H 1.09004 * 109.47288 * 174.52086 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5988 1.9838 -0.8369 5 6 3.5638 1.4447 -0.1376 6 8 4.0371 2.8123 -0.2565 7 6 5.3666 2.9905 -0.3858 8 8 6.1100 2.0294 -0.3993 9 6 5.9190 4.3513 -0.5109 10 6 5.0680 5.4594 -0.4964 11 6 5.5909 6.7290 -0.6143 12 6 6.9579 6.9132 -0.7479 13 6 7.8108 5.8283 -0.7649 14 6 7.3031 4.5420 -0.6412 15 8 8.1394 3.4760 -0.6513 16 6 9.4623 3.7358 -0.6659 17 1 9.8134 4.7539 -0.5851 18 6 10.3720 2.6956 -0.7846 19 7 9.9444 1.4559 -0.8834 20 14 12.2049 3.0558 -0.8055 21 1 12.4233 4.5194 -0.6811 22 1 12.8591 2.3598 0.3315 23 1 12.7894 2.5745 -2.0830 24 8 1.6714 2.0780 1.2257 25 6 0.5241 2.9233 1.1201 26 1 -0.3634 0.4298 0.9334 27 1 -0.3634 -1.0233 -0.0945 28 1 -0.3633 0.5935 -0.8390 29 1 1.8933 -0.5139 0.8899 30 1 1.8933 -0.5137 -0.8901 31 1 4.0088 0.9815 0.7431 32 1 3.8492 0.8828 -1.0270 33 1 4.0018 5.3212 -0.3938 34 1 4.9319 7.5846 -0.6034 35 1 7.3583 7.9121 -0.8401 36 1 8.8750 5.9803 -0.8698 37 1 10.5807 0.7285 -0.9661 38 1 0.7533 3.7672 0.4694 39 1 -0.3073 2.3566 0.7009 40 1 0.2513 3.2907 2.1094 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842071384.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:36 Heat of formation + Delta-G solvation = -158.204591 kcal Electronic energy + Delta-G solvation = -23521.060758 eV Core-core repulsion = 19880.181296 eV Total energy + Delta-G solvation = -3640.879462 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.58750 -40.48809 -39.41412 -38.13862 -37.16269 -34.44604 -34.38073 -32.41539 -30.68902 -30.52986 -27.53744 -27.25486 -25.49370 -24.13734 -23.20457 -22.24159 -21.74751 -19.92611 -19.23698 -18.35023 -18.19987 -17.56230 -16.94640 -16.49619 -16.41216 -16.13379 -15.91909 -15.58498 -15.37232 -15.11577 -14.71767 -14.43111 -14.23008 -14.06874 -13.77343 -13.57603 -13.10169 -13.05515 -12.80780 -12.72997 -12.57621 -12.39319 -12.29881 -12.09855 -12.04819 -11.74916 -11.62783 -11.57455 -11.11502 -10.87444 -10.47895 -9.93517 -9.12924 -8.49604 -6.20644 -0.05634 0.68117 1.33084 1.43586 1.53169 1.67201 1.73134 2.13686 2.75083 2.81197 3.15210 3.34583 3.63250 3.83604 3.91947 4.05887 4.10891 4.21626 4.25758 4.35695 4.43909 4.46432 4.51834 4.60608 4.61275 4.67627 4.85204 4.89103 4.95389 5.04541 5.06592 5.11202 5.14955 5.35645 5.36706 5.46415 5.59807 5.65313 5.92318 6.11633 6.23785 6.89091 6.96925 7.70749 8.71092 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.018103 B = 0.003986 C = 0.003327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.296401 B = 7022.913094 C = 8414.153486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.140 4.140 3 C 0.101 3.899 4 H 0.089 0.911 5 C 0.058 3.942 6 O -0.349 6.349 7 C 0.497 3.503 8 O -0.533 6.533 9 C -0.239 4.239 10 C -0.012 4.012 11 C -0.203 4.203 12 C -0.027 4.027 13 C -0.256 4.256 14 C 0.157 3.843 15 O -0.188 6.188 16 C -0.427 4.427 17 H 0.112 0.888 18 C -0.021 4.021 19 N -0.904 5.904 20 Si 1.025 2.975 21 H -0.243 1.243 22 H -0.270 1.270 23 H -0.267 1.267 24 O -0.402 6.402 25 C 0.021 3.979 26 H 0.059 0.941 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.084 0.916 31 H 0.055 0.945 32 H 0.079 0.921 33 H 0.154 0.846 34 H 0.167 0.833 35 H 0.162 0.838 36 H 0.131 0.869 37 H 0.273 0.727 38 H 0.046 0.954 39 H 0.063 0.937 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.411 6.576 0.431 18.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.177 4.177 3 C 0.043 3.957 4 H 0.107 0.893 5 C -0.016 4.016 6 O -0.266 6.266 7 C 0.345 3.655 8 O -0.424 6.424 9 C -0.241 4.241 10 C -0.030 4.030 11 C -0.221 4.221 12 C -0.045 4.045 13 C -0.275 4.275 14 C 0.102 3.898 15 O -0.091 6.091 16 C -0.503 4.503 17 H 0.129 0.871 18 C -0.220 4.220 19 N -0.540 5.540 20 Si 0.843 3.157 21 H -0.166 1.166 22 H -0.195 1.195 23 H -0.192 1.192 24 O -0.322 6.322 25 C -0.075 4.075 26 H 0.078 0.922 27 H 0.089 0.911 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.103 0.897 31 H 0.073 0.927 32 H 0.097 0.903 33 H 0.171 0.829 34 H 0.184 0.816 35 H 0.179 0.821 36 H 0.149 0.851 37 H 0.082 0.918 38 H 0.064 0.936 39 H 0.082 0.918 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -17.082 5.753 0.583 18.034 hybrid contribution 1.064 -0.678 -0.162 1.272 sum -16.018 5.076 0.422 16.808 Atomic orbital electron populations 1.21787 0.93192 1.03054 1.02385 1.21929 0.98305 0.94002 1.03493 1.22209 0.89756 0.95379 0.88313 0.89333 1.23435 0.95581 0.80556 1.02033 1.86487 1.23647 1.32335 1.84179 1.21466 0.80472 0.90405 0.73181 1.90978 1.60264 1.43635 1.47482 1.18491 0.90971 0.91164 1.23495 1.21363 0.99373 0.90768 0.91462 1.21220 0.95432 0.96969 1.08522 1.21538 0.93399 0.98528 0.90986 1.21303 1.01740 0.91417 1.13018 1.19981 0.89775 0.88854 0.91169 1.84159 1.17658 1.29695 1.77545 1.22136 0.78557 0.96353 1.53236 0.87116 1.26805 1.06153 0.93861 0.95189 1.70304 1.37365 1.00287 1.46004 0.84466 0.72805 0.79906 0.78544 1.16620 1.19496 1.19228 1.87923 1.48799 1.63438 1.32034 1.23108 0.87300 0.93421 1.03623 0.92174 0.91098 0.91621 0.91494 0.89728 0.92696 0.90275 0.82865 0.81591 0.82065 0.85087 0.91815 0.93565 0.91810 0.88763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 8.71 71.98 0.63 -1.45 16 2 C -0.14 -2.70 5.64 30.59 0.17 -2.53 16 3 C 0.10 2.48 2.56 30.59 0.08 2.56 16 4 H 0.09 1.86 7.70 -2.38 -0.02 1.84 16 5 C 0.06 1.97 5.14 71.98 0.37 2.34 16 6 O -0.35 -13.77 9.44 -54.05 -0.51 -14.28 16 7 C 0.50 24.48 7.89 70.23 0.55 25.04 16 8 O -0.53 -31.88 14.96 26.78 0.40 -31.48 16 9 C -0.24 -11.03 5.89 -20.00 -0.12 -11.15 16 10 C -0.01 -0.40 9.61 22.53 0.22 -0.18 16 11 C -0.20 -5.69 10.02 22.25 0.22 -5.46 16 12 C -0.03 -0.82 10.03 22.30 0.22 -0.59 16 13 C -0.26 -10.78 9.13 22.36 0.20 -10.57 16 14 C 0.16 8.18 6.66 22.92 0.15 8.33 16 15 O -0.19 -11.93 7.84 1.03 0.01 -11.92 16 16 C -0.43 -25.47 9.45 67.93 0.64 -24.83 16 17 H 0.11 5.87 5.29 -2.91 -0.02 5.85 16 18 C -0.02 -1.20 5.49 84.85 0.47 -0.73 16 19 N -0.90 -58.31 13.67 21.62 0.30 -58.01 16 20 Si 1.02 43.38 29.55 68.60 2.03 45.41 16 21 H -0.24 -9.25 7.11 99.48 0.71 -8.54 16 22 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 23 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 24 O -0.40 -10.53 10.12 -145.57 -1.47 -12.01 16 25 C 0.02 0.37 10.37 113.37 1.18 1.55 16 26 H 0.06 0.86 6.69 -2.39 -0.02 0.84 16 27 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 33 H 0.15 4.28 7.61 -2.91 -0.02 4.26 16 34 H 0.17 3.07 8.06 -2.91 -0.02 3.04 16 35 H 0.16 3.47 8.06 -2.91 -0.02 3.45 16 36 H 0.13 5.49 5.71 -2.91 -0.02 5.47 16 37 H 0.27 16.02 8.31 -92.71 -0.77 15.25 16 38 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.06 0.84 5.95 -2.39 -0.01 0.82 16 40 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -83.67 341.97 6.78 -76.89 By element: Atomic # 1 Polarization: 22.04 SS G_CDS: 1.05 Total: 23.08 kcal Atomic # 6 Polarization: -22.67 SS G_CDS: 4.99 Total: -17.68 kcal Atomic # 7 Polarization: -58.31 SS G_CDS: 0.30 Total: -58.01 kcal Atomic # 8 Polarization: -68.11 SS G_CDS: -1.57 Total: -69.69 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -83.67 6.78 -76.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842071384.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.317 kcal (2) G-P(sol) polarization free energy of solvation -83.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds