Wall clock time and date at job start Tue Mar 31 2020 06:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47078 * 2 1 4 4 C 1.53006 * 109.46890 * 119.99585 * 2 1 3 5 5 H 1.08998 * 109.47109 * 60.00101 * 4 2 1 6 6 O 1.42904 * 109.47012 * 299.99763 * 4 2 1 7 7 C 1.53004 * 109.46924 * 180.02562 * 4 2 1 8 8 O 1.45191 * 109.47105 * 184.99911 * 7 4 2 9 9 C 1.34757 * 117.00218 * 179.97438 * 8 7 4 10 10 O 1.21513 * 119.99823 * 0.02562 * 9 8 7 11 11 C 1.47396 * 120.00382 * 180.02562 * 9 8 7 12 12 C 1.39727 * 120.19979 * 359.96192 * 11 9 8 13 13 C 1.37807 * 119.91328 * 180.02562 * 12 11 9 14 14 C 1.38597 * 120.32919 * 359.97438 * 13 12 11 15 15 C 1.38017 * 120.41373 * 0.02562 * 14 13 12 16 16 C 1.38838 * 120.07918 * 359.97322 * 15 14 13 17 17 O 1.35498 * 120.16385 * 180.02562 * 16 15 14 18 18 C 1.34816 * 117.00238 * 354.40902 * 17 16 15 19 19 H 1.07995 * 119.99847 * 5.06099 * 18 17 16 20 20 C 1.38708 * 119.99941 * 185.06158 * 18 17 16 21 21 N 1.31514 * 119.99957 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99829 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47099 * 89.99787 * 22 20 18 24 24 H 1.48503 * 109.47033 * 210.00030 * 22 20 18 25 25 H 1.48500 * 109.46985 * 329.99840 * 22 20 18 26 26 H 1.08998 * 109.47170 * 299.99949 * 1 2 3 27 27 H 1.08999 * 109.46811 * 60.00671 * 1 2 3 28 28 H 1.09004 * 109.47133 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47171 * 239.99550 * 2 1 3 30 30 H 1.08996 * 109.47293 * 59.99246 * 3 2 1 31 31 H 1.08995 * 109.47157 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.46519 * 299.99791 * 3 2 1 33 33 H 0.96700 * 114.00179 * 300.00384 * 6 4 2 34 34 H 1.09003 * 109.47159 * 64.99613 * 7 4 2 35 35 H 1.09004 * 109.46473 * 305.00194 * 7 4 2 36 36 H 1.08000 * 120.04958 * 0.04373 * 12 11 9 37 37 H 1.08001 * 119.83645 * 180.27327 * 13 12 11 38 38 H 1.08001 * 119.78884 * 180.02562 * 14 13 12 39 39 H 1.08003 * 119.95781 * 180.02562 * 15 14 13 40 40 H 0.97001 * 119.99808 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 1 1.6767 -1.7488 1.2494 6 8 1.5637 -0.0474 2.4161 7 6 3.5701 -0.7206 1.2497 8 8 4.0541 -1.5057 2.3711 9 6 5.3900 -1.6070 2.5157 10 8 6.1302 -1.0539 1.7265 11 6 5.9535 -2.3885 3.6312 12 6 5.1062 -3.0256 4.5415 13 6 5.6394 -3.7544 5.5825 14 6 7.0133 -3.8597 5.7316 15 6 7.8627 -3.2360 4.8403 16 6 7.3439 -2.4975 3.7853 17 8 8.1762 -1.8849 2.9089 18 6 9.4957 -1.9337 3.1814 19 1 9.8527 -2.5133 4.0198 20 6 10.3945 -1.2396 2.3851 21 7 9.9596 -0.5342 1.3638 22 14 12.2226 -1.3067 2.7631 23 1 12.8374 -2.4449 2.0340 24 1 12.8640 -0.0384 2.3325 25 1 12.4196 -1.4900 4.2235 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.6766 1.9564 0.8899 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9562 -0.8901 33 1 1.8490 0.8742 2.4821 34 1 3.9330 0.3033 1.3393 35 1 3.9336 -1.1548 0.3183 36 1 4.0349 -2.9472 4.4294 37 1 4.9834 -4.2499 6.2829 38 1 7.4217 -4.4334 6.5504 39 1 8.9321 -3.3233 4.9632 40 1 10.5882 -0.0490 0.8067 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849712179.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:22 Heat of formation + Delta-G solvation = -146.795760 kcal Electronic energy + Delta-G solvation = -23559.144758 eV Core-core repulsion = 19918.760020 eV Total energy + Delta-G solvation = -3640.384738 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.92063 -38.98155 -38.11472 -36.41406 -35.35344 -33.92406 -32.42070 -30.81726 -29.13655 -28.91748 -27.42400 -25.50110 -24.15038 -22.75948 -21.53739 -20.39426 -19.99593 -18.07683 -17.51572 -16.98858 -16.39723 -16.34376 -15.71908 -15.14852 -14.74013 -14.54538 -14.41293 -13.99839 -13.82729 -13.70960 -13.44264 -13.10261 -12.64738 -12.38368 -12.30711 -12.18289 -12.05462 -11.76695 -11.45747 -11.33787 -11.12806 -11.10363 -10.93738 -10.81760 -10.64006 -10.49898 -10.10091 -10.06848 -9.72506 -9.22795 -8.94264 -8.32457 -7.38433 -6.52298 -4.12106 1.60529 2.30911 3.07910 3.09203 3.13887 3.18109 3.45990 3.87879 4.33765 4.54942 4.59735 4.62790 4.74488 5.00517 5.06633 5.13081 5.20058 5.36222 5.44162 5.49833 5.57188 5.60369 5.62884 5.69198 5.78304 5.85266 5.85640 6.07951 6.09313 6.13824 6.14256 6.57486 6.65157 6.88915 6.99699 7.10664 7.22748 7.30005 7.56603 7.65818 7.86383 8.72470 8.88096 9.57466 10.61550 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.016715 B = 0.004093 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.690104 B = 6839.787891 C = 8354.353247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.126 4.126 3 C -0.160 4.160 4 C 0.115 3.885 5 H 0.108 0.892 6 O -0.551 6.551 7 C 0.036 3.964 8 O -0.357 6.357 9 C 0.496 3.504 10 O -0.479 6.479 11 C -0.216 4.216 12 C -0.014 4.014 13 C -0.234 4.234 14 C -0.043 4.043 15 C -0.240 4.240 16 C 0.192 3.808 17 O -0.126 6.126 18 C -0.403 4.403 19 H 0.096 0.904 20 C 0.045 3.955 21 N -0.833 5.833 22 Si 0.943 3.057 23 H -0.271 1.271 24 H -0.276 1.276 25 H -0.265 1.265 26 H 0.062 0.938 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.082 0.918 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.372 0.628 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.126 0.874 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.134 0.866 40 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.306 -0.125 0.639 13.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.145 4.145 3 C -0.218 4.218 4 C 0.056 3.944 5 H 0.126 0.874 6 O -0.356 6.356 7 C -0.039 4.039 8 O -0.276 6.276 9 C 0.342 3.658 10 O -0.366 6.366 11 C -0.219 4.219 12 C -0.033 4.033 13 C -0.253 4.253 14 C -0.062 4.062 15 C -0.259 4.259 16 C 0.132 3.868 17 O -0.024 6.024 18 C -0.479 4.479 19 H 0.114 0.886 20 C -0.163 4.163 21 N -0.464 5.464 22 Si 0.767 3.233 23 H -0.197 1.197 24 H -0.201 1.201 25 H -0.190 1.190 26 H 0.081 0.919 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.100 0.900 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.219 0.781 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.144 0.856 37 H 0.131 0.869 38 H 0.130 0.870 39 H 0.152 0.848 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -13.276 -0.200 0.035 13.278 hybrid contribution 1.325 0.510 -0.105 1.423 sum -11.952 0.311 -0.070 11.956 Atomic orbital electron populations 1.21731 0.93982 1.02067 1.02000 1.21744 0.97170 0.97160 0.98441 1.21972 1.01788 0.95660 1.02339 1.21991 0.90110 0.97391 0.84941 0.87423 1.86599 1.76401 1.29031 1.43585 1.23703 0.94780 0.96234 0.89217 1.86558 1.25239 1.67396 1.48427 1.21145 0.79728 0.79748 0.85215 1.90995 1.59318 1.43617 1.42656 1.18033 0.90556 1.12285 1.01034 1.20991 0.98606 0.92041 0.91639 1.20554 0.94893 1.07903 1.01985 1.20972 0.93401 0.95303 0.96522 1.21109 1.00803 1.05386 0.98593 1.19235 0.89003 0.90261 0.88290 1.84141 1.17331 1.60971 1.39979 1.21537 0.78767 1.32013 1.15568 0.88644 1.25414 1.00527 0.95149 0.95221 1.70118 1.35624 1.26285 1.14404 0.85693 0.80129 0.78328 0.79181 1.19667 1.20073 1.18961 0.91866 0.92699 0.92584 0.89970 0.92291 0.91814 0.92003 0.78059 0.91107 0.90849 0.85646 0.86950 0.86950 0.84835 0.91757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.05 37.16 0.34 -0.83 16 2 C -0.13 -1.18 2.81 -90.61 -0.25 -1.44 16 3 C -0.16 -1.43 8.53 37.16 0.32 -1.11 16 4 C 0.12 1.36 3.06 -26.73 -0.08 1.28 16 5 H 0.11 1.27 8.14 -51.93 -0.42 0.85 16 6 O -0.55 -6.80 12.59 -38.82 -0.49 -7.29 16 7 C 0.04 0.54 4.60 37.16 0.17 0.71 16 8 O -0.36 -6.80 9.44 -43.44 -0.41 -7.21 16 9 C 0.50 11.49 7.89 34.46 0.27 11.77 16 10 O -0.48 -13.03 14.96 -26.59 -0.40 -13.42 16 11 C -0.22 -4.92 5.89 -104.83 -0.62 -5.54 16 12 C -0.01 -0.27 9.61 -39.18 -0.38 -0.65 16 13 C -0.23 -4.00 10.02 -39.61 -0.40 -4.39 16 14 C -0.04 -0.77 10.03 -39.53 -0.40 -1.17 16 15 C -0.24 -5.14 9.16 -39.44 -0.36 -5.50 16 16 C 0.19 4.78 6.66 -38.58 -0.26 4.53 16 17 O -0.13 -3.70 7.84 -21.00 -0.16 -3.86 16 18 C -0.40 -11.28 9.49 30.91 0.29 -10.98 16 19 H 0.10 2.41 5.21 -52.49 -0.27 2.14 16 20 C 0.04 1.23 5.49 -17.51 -0.10 1.14 16 21 N -0.83 -24.72 13.67 55.48 0.76 -23.96 16 22 Si 0.94 20.19 29.55 -169.99 -5.02 15.17 16 23 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 24 H -0.28 -5.79 7.11 56.52 0.40 -5.38 16 25 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 26 H 0.06 0.55 7.68 -51.93 -0.40 0.15 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.47 6.78 -51.93 -0.35 0.11 16 31 H 0.06 0.64 6.54 -51.93 -0.34 0.30 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.37 3.61 7.33 45.56 0.33 3.95 16 34 H 0.07 1.09 6.70 -51.93 -0.35 0.74 16 35 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.13 2.07 7.61 -52.49 -0.40 1.67 16 37 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 38 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 39 H 0.13 2.78 5.64 -52.48 -0.30 2.49 16 40 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 338.44 15.07 5.10 5.10 Total: -1.00 -33.82 338.44 -6.66 -40.49 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -4.59 Total: 7.18 kcal Atomic # 6 Polarization: -10.73 SS G_CDS: -1.45 Total: -12.18 kcal Atomic # 7 Polarization: -24.72 SS G_CDS: 0.76 Total: -23.96 kcal Atomic # 8 Polarization: -30.32 SS G_CDS: -1.46 Total: -31.79 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.82 -6.66 -40.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849712179.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.310 kcal (2) G-P(sol) polarization free energy of solvation -33.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds