Wall clock time and date at job start Tue Mar 31 2020 06:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47078 * 2 1 4 4 C 1.53006 * 109.46890 * 119.99585 * 2 1 3 5 5 H 1.08998 * 109.47109 * 60.00101 * 4 2 1 6 6 O 1.42904 * 109.47012 * 299.99763 * 4 2 1 7 7 C 1.53004 * 109.46924 * 180.02562 * 4 2 1 8 8 O 1.45191 * 109.47105 * 184.99911 * 7 4 2 9 9 C 1.34757 * 117.00218 * 179.97438 * 8 7 4 10 10 O 1.21513 * 119.99823 * 0.02562 * 9 8 7 11 11 C 1.47396 * 120.00382 * 180.02562 * 9 8 7 12 12 C 1.39727 * 120.19979 * 359.96192 * 11 9 8 13 13 C 1.37807 * 119.91328 * 180.02562 * 12 11 9 14 14 C 1.38597 * 120.32919 * 359.97438 * 13 12 11 15 15 C 1.38017 * 120.41373 * 0.02562 * 14 13 12 16 16 C 1.38838 * 120.07918 * 359.97322 * 15 14 13 17 17 O 1.35498 * 120.16385 * 180.02562 * 16 15 14 18 18 C 1.34816 * 117.00238 * 354.40902 * 17 16 15 19 19 H 1.07995 * 119.99847 * 5.06099 * 18 17 16 20 20 C 1.38708 * 119.99941 * 185.06158 * 18 17 16 21 21 N 1.31514 * 119.99957 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99829 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47099 * 89.99787 * 22 20 18 24 24 H 1.48503 * 109.47033 * 210.00030 * 22 20 18 25 25 H 1.48500 * 109.46985 * 329.99840 * 22 20 18 26 26 H 1.08998 * 109.47170 * 299.99949 * 1 2 3 27 27 H 1.08999 * 109.46811 * 60.00671 * 1 2 3 28 28 H 1.09004 * 109.47133 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47171 * 239.99550 * 2 1 3 30 30 H 1.08996 * 109.47293 * 59.99246 * 3 2 1 31 31 H 1.08995 * 109.47157 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.46519 * 299.99791 * 3 2 1 33 33 H 0.96700 * 114.00179 * 300.00384 * 6 4 2 34 34 H 1.09003 * 109.47159 * 64.99613 * 7 4 2 35 35 H 1.09004 * 109.46473 * 305.00194 * 7 4 2 36 36 H 1.08000 * 120.04958 * 0.04373 * 12 11 9 37 37 H 1.08001 * 119.83645 * 180.27327 * 13 12 11 38 38 H 1.08001 * 119.78884 * 180.02562 * 14 13 12 39 39 H 1.08003 * 119.95781 * 180.02562 * 15 14 13 40 40 H 0.97001 * 119.99808 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 1 1.6767 -1.7488 1.2494 6 8 1.5637 -0.0474 2.4161 7 6 3.5701 -0.7206 1.2497 8 8 4.0541 -1.5057 2.3711 9 6 5.3900 -1.6070 2.5157 10 8 6.1302 -1.0539 1.7265 11 6 5.9535 -2.3885 3.6312 12 6 5.1062 -3.0256 4.5415 13 6 5.6394 -3.7544 5.5825 14 6 7.0133 -3.8597 5.7316 15 6 7.8627 -3.2360 4.8403 16 6 7.3439 -2.4975 3.7853 17 8 8.1762 -1.8849 2.9089 18 6 9.4957 -1.9337 3.1814 19 1 9.8527 -2.5133 4.0198 20 6 10.3945 -1.2396 2.3851 21 7 9.9596 -0.5342 1.3638 22 14 12.2226 -1.3067 2.7631 23 1 12.8374 -2.4449 2.0340 24 1 12.8640 -0.0384 2.3325 25 1 12.4196 -1.4900 4.2235 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.6766 1.9564 0.8899 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9562 -0.8901 33 1 1.8490 0.8742 2.4821 34 1 3.9330 0.3033 1.3393 35 1 3.9336 -1.1548 0.3183 36 1 4.0349 -2.9472 4.4294 37 1 4.9834 -4.2499 6.2829 38 1 7.4217 -4.4334 6.5504 39 1 8.9321 -3.3233 4.9632 40 1 10.5882 -0.0490 0.8067 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849712179.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:21 Heat of formation + Delta-G solvation = -169.512100 kcal Electronic energy + Delta-G solvation = -23560.129812 eV Core-core repulsion = 19918.760020 eV Total energy + Delta-G solvation = -3641.369792 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.60983 -40.53053 -39.38517 -38.13520 -37.06371 -34.78856 -34.38312 -32.43356 -30.66564 -30.25086 -28.15092 -27.46268 -25.56262 -24.11073 -23.21139 -21.88705 -21.03453 -19.92328 -19.24061 -18.43617 -17.89224 -17.67941 -17.04502 -16.48750 -16.35192 -16.15497 -15.85114 -15.53143 -15.34192 -15.07386 -14.84903 -14.41499 -14.17501 -13.70276 -13.58894 -13.51570 -13.10936 -13.02598 -12.89447 -12.72703 -12.56368 -12.39131 -12.30218 -12.13349 -11.83191 -11.70132 -11.65061 -11.51778 -11.22496 -10.86871 -10.84421 -9.93830 -9.13215 -8.49576 -6.20815 -0.05970 0.67793 1.32919 1.44162 1.52048 1.66657 1.72176 2.13617 2.80958 3.13579 3.34353 3.37087 3.54504 3.74026 3.87284 4.03052 4.04224 4.09943 4.23865 4.26903 4.34273 4.51068 4.56880 4.64650 4.74133 4.82828 4.92485 4.93469 5.00278 5.04218 5.11750 5.15628 5.33428 5.36173 5.43135 5.46513 5.59164 5.65333 5.92122 6.11209 6.68357 6.89025 6.97020 7.70237 8.70663 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.016715 B = 0.004093 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.690104 B = 6839.787891 C = 8354.353247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.121 4.121 3 C -0.161 4.161 4 C 0.127 3.873 5 H 0.112 0.888 6 O -0.560 6.560 7 C 0.028 3.972 8 O -0.347 6.347 9 C 0.496 3.504 10 O -0.532 6.532 11 C -0.239 4.239 12 C -0.012 4.012 13 C -0.204 4.204 14 C -0.026 4.026 15 C -0.256 4.256 16 C 0.158 3.842 17 O -0.188 6.188 18 C -0.429 4.429 19 H 0.112 0.888 20 C -0.019 4.019 21 N -0.904 5.904 22 Si 1.024 2.976 23 H -0.261 1.261 24 H -0.273 1.273 25 H -0.246 1.246 26 H 0.060 0.940 27 H 0.068 0.932 28 H 0.058 0.942 29 H 0.085 0.915 30 H 0.069 0.931 31 H 0.044 0.956 32 H 0.074 0.926 33 H 0.382 0.618 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.153 0.847 37 H 0.165 0.835 38 H 0.162 0.838 39 H 0.132 0.868 40 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.157 -1.880 3.330 15.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.139 4.139 3 C -0.219 4.219 4 C 0.068 3.932 5 H 0.130 0.870 6 O -0.367 6.367 7 C -0.046 4.046 8 O -0.265 6.265 9 C 0.344 3.656 10 O -0.423 6.423 11 C -0.242 4.242 12 C -0.030 4.030 13 C -0.222 4.222 14 C -0.044 4.044 15 C -0.275 4.275 16 C 0.103 3.897 17 O -0.090 6.090 18 C -0.505 4.505 19 H 0.129 0.871 20 C -0.219 4.219 21 N -0.539 5.539 22 Si 0.842 3.158 23 H -0.186 1.186 24 H -0.197 1.197 25 H -0.169 1.169 26 H 0.079 0.921 27 H 0.087 0.913 28 H 0.077 0.923 29 H 0.104 0.896 30 H 0.088 0.912 31 H 0.063 0.937 32 H 0.093 0.907 33 H 0.232 0.768 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.171 0.829 37 H 0.183 0.817 38 H 0.179 0.821 39 H 0.150 0.850 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -15.201 -1.991 2.783 15.581 hybrid contribution 1.498 0.905 -0.730 1.896 sum -13.702 -1.086 2.054 13.898 Atomic orbital electron populations 1.21700 0.92532 1.02489 1.02585 1.21719 0.98153 0.97003 0.97066 1.21986 1.00564 0.95740 1.03561 1.21985 0.86937 0.98167 0.86155 0.86992 1.86568 1.76235 1.30035 1.43845 1.24110 0.97390 0.95324 0.87792 1.86533 1.22796 1.67545 1.49633 1.21459 0.80626 0.78803 0.84713 1.90979 1.60834 1.45840 1.44613 1.18495 0.90593 1.13082 1.02004 1.21377 0.99509 0.91178 0.90952 1.21223 0.95287 1.04874 1.00834 1.21538 0.93444 0.93402 0.96041 1.21303 1.01599 1.05902 0.98723 1.19962 0.89821 0.90699 0.89246 1.84143 1.18047 1.64197 1.42610 1.22110 0.79158 1.32749 1.16435 0.87093 1.26793 1.06068 0.94348 0.94706 1.70301 1.37555 1.29220 1.16820 0.84535 0.72841 0.78521 0.79921 1.18596 1.19750 1.16944 0.92061 0.91323 0.92267 0.89630 0.91233 0.93731 0.90695 0.76815 0.91661 0.91454 0.82927 0.81708 0.82072 0.85026 0.91838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 9.05 71.98 0.65 -1.31 16 2 C -0.12 -2.11 2.81 -10.79 -0.03 -2.14 16 3 C -0.16 -2.76 8.53 71.98 0.61 -2.14 16 4 C 0.13 2.89 3.06 30.60 0.09 2.99 16 5 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 6 O -0.56 -13.01 12.59 -145.55 -1.83 -14.85 16 7 C 0.03 0.89 4.60 71.98 0.33 1.22 16 8 O -0.35 -13.38 9.44 -54.01 -0.51 -13.89 16 9 C 0.50 24.03 7.89 70.23 0.55 24.58 16 10 O -0.53 -31.20 14.96 26.79 0.40 -30.80 16 11 C -0.24 -11.00 5.89 -20.00 -0.12 -11.12 16 12 C -0.01 -0.42 9.61 22.53 0.22 -0.20 16 13 C -0.20 -5.80 10.02 22.25 0.22 -5.57 16 14 C -0.03 -0.81 10.03 22.30 0.22 -0.59 16 15 C -0.26 -10.76 9.16 22.36 0.20 -10.55 16 16 C 0.16 8.15 6.66 22.92 0.15 8.31 16 17 O -0.19 -11.79 7.84 1.06 0.01 -11.78 16 18 C -0.43 -25.39 9.49 67.93 0.64 -24.74 16 19 H 0.11 5.82 5.21 -2.91 -0.02 5.81 16 20 C -0.02 -1.13 5.49 84.85 0.47 -0.66 16 21 N -0.90 -57.77 13.67 21.62 0.30 -57.48 16 22 Si 1.02 43.01 29.55 68.60 2.03 45.03 16 23 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 24 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 25 H -0.25 -9.39 7.11 99.48 0.71 -8.68 16 26 H 0.06 0.92 7.68 -2.39 -0.02 0.90 16 27 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 29 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.07 1.02 6.78 -2.39 -0.02 1.01 16 31 H 0.04 0.93 6.54 -2.39 -0.02 0.91 16 32 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 33 H 0.38 7.00 7.33 -74.06 -0.54 6.46 16 34 H 0.07 2.13 6.70 -2.39 -0.02 2.11 16 35 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 36 H 0.15 4.40 7.61 -2.91 -0.02 4.38 16 37 H 0.17 3.16 8.06 -2.91 -0.02 3.14 16 38 H 0.16 3.50 8.06 -2.91 -0.02 3.47 16 39 H 0.13 5.47 5.64 -2.91 -0.02 5.46 16 40 H 0.27 15.91 8.31 -92.71 -0.77 15.14 16 Total: -1.00 -82.03 338.44 5.14 -76.89 By element: Atomic # 1 Polarization: 28.28 SS G_CDS: 0.52 Total: 28.81 kcal Atomic # 6 Polarization: -26.17 SS G_CDS: 4.23 Total: -21.94 kcal Atomic # 7 Polarization: -57.77 SS G_CDS: 0.30 Total: -57.48 kcal Atomic # 8 Polarization: -69.38 SS G_CDS: -1.93 Total: -71.32 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.03 kcal Total: -82.03 5.14 -76.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849712179.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.620 kcal (2) G-P(sol) polarization free energy of solvation -82.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds