Wall clock time and date at job start Tue Mar 31 2020 07:32:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.09001 * 109.46972 * 2 1 4 4 O 1.42905 * 109.46881 * 120.00255 * 2 1 3 5 5 C 1.53000 * 109.46891 * 239.99844 * 2 1 3 6 6 C 1.52998 * 109.46926 * 175.00036 * 5 2 1 7 7 O 1.45203 * 109.47097 * 179.97438 * 6 5 2 8 8 C 1.34225 * 117.00065 * 179.97438 * 7 6 5 9 9 O 1.20830 * 120.00117 * 0.02562 * 8 7 6 10 10 C 1.50705 * 120.00089 * 180.02562 * 8 7 6 11 11 C 1.50695 * 109.46992 * 180.02562 * 10 8 7 12 12 C 1.38299 * 119.93247 * 90.00201 * 11 10 8 13 13 C 1.38101 * 120.07425 * 179.97438 * 12 11 10 14 14 C 1.38886 * 119.92536 * 0.02562 * 13 12 11 15 15 O 1.35750 * 120.06440 * 180.02562 * 14 13 12 16 16 C 1.34828 * 117.00075 * 5.53777 * 15 14 13 17 17 H 1.07993 * 120.00518 * 354.94289 * 16 15 14 18 18 C 1.38663 * 119.99751 * 174.94575 * 16 15 14 19 19 N 1.31556 * 120.00220 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 119.99821 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47448 * 89.99502 * 20 18 16 22 22 H 1.48501 * 109.47175 * 209.99712 * 20 18 16 23 23 H 1.48506 * 109.47415 * 329.99678 * 20 18 16 24 24 C 1.38874 * 119.86623 * 0.27854 * 14 13 12 25 25 C 1.38112 * 119.92511 * 359.40251 * 24 14 13 26 26 H 1.09001 * 109.46972 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46538 * 300.00081 * 1 2 3 28 28 H 1.09004 * 109.46673 * 59.99909 * 1 2 3 29 29 H 0.96691 * 113.99885 * 59.99544 * 4 2 1 30 30 H 1.09000 * 109.46876 * 54.99947 * 5 2 1 31 31 H 1.09005 * 109.47364 * 295.00440 * 5 2 1 32 32 H 1.09005 * 109.47055 * 60.00536 * 6 5 2 33 33 H 1.08992 * 109.47430 * 300.00049 * 6 5 2 34 34 H 1.08998 * 109.46621 * 60.00590 * 10 8 7 35 35 H 1.08996 * 109.47266 * 300.00254 * 10 8 7 36 36 H 1.07999 * 119.96503 * 0.02562 * 12 11 10 37 37 H 1.07992 * 120.03608 * 180.02562 * 13 12 11 38 38 H 0.96996 * 120.00178 * 179.97438 * 19 18 16 39 39 H 1.07996 * 120.03745 * 179.72497 * 24 14 13 40 40 H 1.08003 * 119.96174 * 180.31972 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6737 1.1668 5 6 2.0400 -0.7213 -1.2492 6 6 3.5649 -0.6133 -1.3137 7 8 4.0489 -1.2984 -2.4989 8 6 5.3752 -1.2964 -2.7049 9 8 6.1077 -0.7411 -1.9206 10 6 5.9510 -1.9869 -3.9145 11 6 7.4507 -1.8394 -3.9107 12 6 8.2359 -2.7884 -3.2818 13 6 9.6105 -2.6564 -3.2770 14 6 10.2043 -1.5687 -3.9042 15 8 11.5554 -1.4364 -3.9016 16 6 12.2688 -2.4516 -3.3741 17 1 11.7616 -3.2816 -2.9050 18 6 13.6540 -2.4299 -3.4339 19 7 14.2720 -1.4191 -4.0058 20 14 14.6424 -3.8367 -2.7037 21 1 14.8617 -4.8778 -3.7397 22 1 15.9539 -3.3264 -2.2295 23 1 13.8976 -4.4245 -1.5613 24 6 9.4129 -0.6141 -4.5293 25 6 8.0390 -0.7553 -4.5363 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.7210 -1.5952 1.2329 30 1 1.6054 -0.2618 -2.1369 31 1 1.7516 -1.7716 -1.2056 32 1 3.9995 -1.0729 -0.4260 33 1 3.8533 0.4368 -1.3574 34 1 5.5434 -1.5352 -4.8189 35 1 5.6903 -3.0449 -3.8874 36 1 7.7736 -3.6342 -2.7947 37 1 10.2231 -3.3980 -2.7862 38 1 15.2410 -1.4038 -4.0473 39 1 9.8715 0.2351 -5.0140 40 1 7.4232 -0.0159 -5.0268 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849728473.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:32:09 Heat of formation + Delta-G solvation = -153.876942 kcal Electronic energy + Delta-G solvation = -22308.084646 eV Core-core repulsion = 18667.392845 eV Total energy + Delta-G solvation = -3640.691801 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.41217 -38.99243 -38.32939 -36.87981 -36.06853 -32.89792 -32.48244 -31.49293 -30.17038 -29.78537 -26.91915 -25.23670 -23.96594 -21.99245 -21.86394 -21.50828 -20.11116 -17.99402 -17.57415 -17.04872 -16.93786 -16.66867 -16.16931 -15.84811 -14.83469 -14.63433 -14.45823 -14.27003 -13.93788 -13.70516 -13.51485 -13.47526 -12.77564 -12.72448 -12.63002 -12.43466 -12.05600 -11.91573 -11.75260 -11.51630 -11.28106 -11.21548 -10.89508 -10.79859 -10.66454 -10.62932 -10.54221 -10.42622 -10.16618 -9.33499 -8.82790 -8.16616 -7.19629 -6.44859 -4.03342 2.12342 2.24311 2.40932 2.82836 3.14146 3.14435 3.19289 3.91929 3.97249 4.29742 4.44702 4.53803 4.64066 4.84097 4.91130 4.98753 5.10681 5.15651 5.21245 5.23421 5.30042 5.30911 5.40663 5.59141 5.62559 5.67669 5.71687 5.73921 5.83600 6.20935 6.40478 6.49618 6.70008 6.90404 7.04860 7.20784 7.22421 7.34621 7.44135 7.81790 7.95075 8.00303 9.00650 9.70524 10.73058 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.031037 B = 0.002403 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.918527 B =11648.201702 C =12056.002336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.103 3.897 3 H 0.102 0.898 4 O -0.562 6.562 5 C -0.151 4.151 6 C 0.068 3.932 7 O -0.368 6.368 8 C 0.453 3.547 9 O -0.490 6.490 10 C -0.050 4.050 11 C -0.184 4.184 12 C -0.053 4.053 13 C -0.233 4.233 14 C 0.159 3.841 15 O -0.176 6.176 16 C -0.392 4.392 17 H 0.093 0.907 18 C 0.039 3.961 19 N -0.862 5.862 20 Si 0.942 3.058 21 H -0.273 1.273 22 H -0.277 1.277 23 H -0.267 1.267 24 C -0.192 4.192 25 C -0.057 4.057 26 H 0.060 0.940 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.376 0.624 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.104 0.896 35 H 0.103 0.897 36 H 0.106 0.894 37 H 0.128 0.872 38 H 0.270 0.730 39 H 0.118 0.882 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.040 -1.146 3.300 25.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.044 3.956 3 H 0.120 0.880 4 O -0.368 6.368 5 C -0.189 4.189 6 C -0.006 4.006 7 O -0.286 6.286 8 C 0.295 3.705 9 O -0.375 6.375 10 C -0.087 4.087 11 C -0.185 4.185 12 C -0.071 4.071 13 C -0.252 4.252 14 C 0.105 3.895 15 O -0.079 6.079 16 C -0.468 4.468 17 H 0.110 0.890 18 C -0.166 4.166 19 N -0.496 5.496 20 Si 0.767 3.233 21 H -0.199 1.199 22 H -0.202 1.202 23 H -0.192 1.192 24 C -0.211 4.211 25 C -0.075 4.075 26 H 0.079 0.921 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.223 0.777 30 H 0.102 0.898 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.122 0.878 35 H 0.121 0.879 36 H 0.124 0.876 37 H 0.146 0.854 38 H 0.080 0.920 39 H 0.136 0.864 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -24.144 -0.119 3.560 24.405 hybrid contribution 0.215 -1.141 0.382 1.223 sum -23.928 -1.261 3.942 24.283 Atomic orbital electron populations 1.22480 0.95753 1.02806 1.03072 1.21868 0.93166 0.96913 0.83647 0.88011 1.86634 1.77149 1.29238 1.43755 1.22323 0.94120 1.02657 0.99774 1.22915 0.93951 0.97319 0.86449 1.86474 1.25888 1.70844 1.45396 1.24212 0.79801 0.78522 0.87917 1.90715 1.60098 1.40975 1.45723 1.20089 0.93538 1.01404 0.93669 1.18640 0.91587 0.99529 1.08712 1.20532 0.93246 0.97148 0.96221 1.21111 0.94706 1.01586 1.07834 1.19409 0.85136 0.92840 0.92119 1.83976 1.11787 1.41861 1.70264 1.21344 0.88499 1.00006 1.36931 0.89008 1.25307 0.95850 0.98413 0.96999 1.70039 1.09559 1.29504 1.40538 0.85698 0.78958 0.79598 0.79096 1.19856 1.20249 1.19181 1.20159 0.92633 1.01292 1.07040 1.20424 0.93699 0.95749 0.97620 0.92101 0.91488 0.91306 0.77661 0.89808 0.90427 0.90677 0.91395 0.87827 0.87874 0.87641 0.85445 0.91995 0.86399 0.87202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.86 9.54 37.16 0.35 -0.50 16 2 C 0.10 0.67 3.59 -26.73 -0.10 0.58 16 3 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 4 O -0.56 -4.52 12.88 -35.23 -0.45 -4.97 16 5 C -0.15 -1.05 5.27 -26.73 -0.14 -1.19 16 6 C 0.07 0.72 5.36 37.16 0.20 0.92 16 7 O -0.37 -4.56 10.22 -39.24 -0.40 -4.96 16 8 C 0.45 6.70 7.95 36.01 0.29 6.99 16 9 O -0.49 -9.24 15.78 -18.75 -0.30 -9.54 16 10 C -0.05 -0.64 5.94 -29.04 -0.17 -0.82 16 11 C -0.18 -3.21 4.38 -104.58 -0.46 -3.67 16 12 C -0.05 -1.01 9.69 -39.61 -0.38 -1.39 16 13 C -0.23 -5.22 9.17 -39.39 -0.36 -5.58 16 14 C 0.16 3.95 6.65 -39.11 -0.26 3.69 16 15 O -0.18 -5.11 9.76 0.05 0.00 -5.11 16 16 C -0.39 -11.09 9.49 30.89 0.29 -10.80 16 17 H 0.09 2.41 5.20 -52.49 -0.27 2.13 16 18 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 19 N -0.86 -25.49 13.67 55.48 0.76 -24.73 16 20 Si 0.94 20.72 29.55 -169.99 -5.02 15.70 16 21 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 22 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 23 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 24 C -0.19 -4.19 9.99 -39.39 -0.39 -4.58 16 25 C -0.06 -1.04 9.69 -39.60 -0.38 -1.43 16 26 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 27 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.38 1.66 9.04 45.56 0.41 2.07 16 30 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.89 7.82 -51.93 -0.41 0.48 16 33 H 0.07 0.76 8.13 -51.93 -0.42 0.34 16 34 H 0.10 1.08 8.08 -51.93 -0.42 0.66 16 35 H 0.10 1.10 8.08 -51.93 -0.42 0.68 16 36 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 37 H 0.13 2.84 5.64 -52.49 -0.30 2.54 16 38 H 0.27 7.31 8.31 -40.82 -0.34 6.98 16 39 H 0.12 2.47 8.06 -52.49 -0.42 2.04 16 40 H 0.11 1.68 8.06 -52.48 -0.42 1.25 16 LS Contribution 348.72 15.07 5.26 5.26 Total: -1.00 -34.43 348.72 -6.54 -40.97 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -4.76 Total: 4.18 kcal Atomic # 6 Polarization: -15.19 SS G_CDS: -1.61 Total: -16.80 kcal Atomic # 7 Polarization: -25.49 SS G_CDS: 0.76 Total: -24.73 kcal Atomic # 8 Polarization: -23.42 SS G_CDS: -1.15 Total: -24.57 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.43 -6.54 -40.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849728473.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.909 kcal (2) G-P(sol) polarization free energy of solvation -34.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds