Wall clock time and date at job start Tue Mar 31 2020 07:32:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.09001 * 109.46972 * 2 1 4 4 O 1.42905 * 109.46881 * 120.00255 * 2 1 3 5 5 C 1.53000 * 109.46891 * 239.99844 * 2 1 3 6 6 C 1.52998 * 109.46926 * 175.00036 * 5 2 1 7 7 O 1.45203 * 109.47097 * 179.97438 * 6 5 2 8 8 C 1.34225 * 117.00065 * 179.97438 * 7 6 5 9 9 O 1.20830 * 120.00117 * 0.02562 * 8 7 6 10 10 C 1.50705 * 120.00089 * 180.02562 * 8 7 6 11 11 C 1.50695 * 109.46992 * 180.02562 * 10 8 7 12 12 C 1.38299 * 119.93247 * 90.00201 * 11 10 8 13 13 C 1.38101 * 120.07425 * 179.97438 * 12 11 10 14 14 C 1.38886 * 119.92536 * 0.02562 * 13 12 11 15 15 O 1.35750 * 120.06440 * 180.02562 * 14 13 12 16 16 C 1.34828 * 117.00075 * 5.53777 * 15 14 13 17 17 H 1.07993 * 120.00518 * 354.94289 * 16 15 14 18 18 C 1.38663 * 119.99751 * 174.94575 * 16 15 14 19 19 N 1.31556 * 120.00220 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 119.99821 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47448 * 89.99502 * 20 18 16 22 22 H 1.48501 * 109.47175 * 209.99712 * 20 18 16 23 23 H 1.48506 * 109.47415 * 329.99678 * 20 18 16 24 24 C 1.38874 * 119.86623 * 0.27854 * 14 13 12 25 25 C 1.38112 * 119.92511 * 359.40251 * 24 14 13 26 26 H 1.09001 * 109.46972 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46538 * 300.00081 * 1 2 3 28 28 H 1.09004 * 109.46673 * 59.99909 * 1 2 3 29 29 H 0.96691 * 113.99885 * 59.99544 * 4 2 1 30 30 H 1.09000 * 109.46876 * 54.99947 * 5 2 1 31 31 H 1.09005 * 109.47364 * 295.00440 * 5 2 1 32 32 H 1.09005 * 109.47055 * 60.00536 * 6 5 2 33 33 H 1.08992 * 109.47430 * 300.00049 * 6 5 2 34 34 H 1.08998 * 109.46621 * 60.00590 * 10 8 7 35 35 H 1.08996 * 109.47266 * 300.00254 * 10 8 7 36 36 H 1.07999 * 119.96503 * 0.02562 * 12 11 10 37 37 H 1.07992 * 120.03608 * 180.02562 * 13 12 11 38 38 H 0.96996 * 120.00178 * 179.97438 * 19 18 16 39 39 H 1.07996 * 120.03745 * 179.72497 * 24 14 13 40 40 H 1.08003 * 119.96174 * 180.31972 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6737 1.1668 5 6 2.0400 -0.7213 -1.2492 6 6 3.5649 -0.6133 -1.3137 7 8 4.0489 -1.2984 -2.4989 8 6 5.3752 -1.2964 -2.7049 9 8 6.1077 -0.7411 -1.9206 10 6 5.9510 -1.9869 -3.9145 11 6 7.4507 -1.8394 -3.9107 12 6 8.2359 -2.7884 -3.2818 13 6 9.6105 -2.6564 -3.2770 14 6 10.2043 -1.5687 -3.9042 15 8 11.5554 -1.4364 -3.9016 16 6 12.2688 -2.4516 -3.3741 17 1 11.7616 -3.2816 -2.9050 18 6 13.6540 -2.4299 -3.4339 19 7 14.2720 -1.4191 -4.0058 20 14 14.6424 -3.8367 -2.7037 21 1 14.8617 -4.8778 -3.7397 22 1 15.9539 -3.3264 -2.2295 23 1 13.8976 -4.4245 -1.5613 24 6 9.4129 -0.6141 -4.5293 25 6 8.0390 -0.7553 -4.5363 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.7210 -1.5952 1.2329 30 1 1.6054 -0.2618 -2.1369 31 1 1.7516 -1.7716 -1.2056 32 1 3.9995 -1.0729 -0.4260 33 1 3.8533 0.4368 -1.3574 34 1 5.5434 -1.5352 -4.8189 35 1 5.6903 -3.0449 -3.8874 36 1 7.7736 -3.6342 -2.7947 37 1 10.2231 -3.3980 -2.7862 38 1 15.2410 -1.4038 -4.0473 39 1 9.8715 0.2351 -5.0140 40 1 7.4232 -0.0159 -5.0268 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849728473.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:32:09 Heat of formation + Delta-G solvation = -177.647131 kcal Electronic energy + Delta-G solvation = -22309.115398 eV Core-core repulsion = 18667.392845 eV Total energy + Delta-G solvation = -3641.722553 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.58355 -40.68712 -39.00803 -38.40095 -37.32667 -34.43112 -33.57050 -32.91593 -31.81237 -30.43232 -28.41280 -27.12539 -24.76252 -23.67053 -22.85939 -22.42448 -21.47376 -19.86917 -18.87515 -18.66413 -17.81768 -17.51220 -17.06275 -16.67921 -16.38131 -16.30398 -15.96254 -15.52562 -15.24125 -14.91962 -14.82934 -14.46089 -14.41121 -14.14694 -13.62905 -13.47203 -13.04689 -12.96682 -12.82874 -12.66878 -12.55189 -12.50497 -12.32403 -12.29538 -12.12399 -11.73156 -11.57194 -11.50732 -11.20353 -11.01285 -10.79717 -9.79515 -8.96383 -8.48541 -6.16875 0.57095 0.58952 1.26798 1.34050 1.42932 1.51891 1.76143 2.16992 2.81890 3.14749 3.45588 3.49019 3.70639 3.80723 3.88203 3.94851 4.02085 4.15711 4.20360 4.33405 4.37649 4.43125 4.48683 4.56443 4.68051 4.77167 4.78056 4.91356 4.96750 5.06038 5.12990 5.19444 5.26838 5.30197 5.48125 5.53621 5.69219 5.72021 6.01284 6.19528 6.82223 6.84297 6.95804 7.76146 8.74682 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.031037 B = 0.002403 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.918527 B =11648.201702 C =12056.002336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.102 3.898 3 H 0.093 0.907 4 O -0.586 6.586 5 C -0.139 4.139 6 C 0.063 3.937 7 O -0.356 6.356 8 C 0.460 3.540 9 O -0.540 6.540 10 C -0.048 4.048 11 C -0.160 4.160 12 C -0.056 4.056 13 C -0.245 4.245 14 C 0.116 3.884 15 O -0.232 6.232 16 C -0.415 4.415 17 H 0.101 0.899 18 C -0.024 4.024 19 N -0.920 5.920 20 Si 1.021 2.979 21 H -0.261 1.261 22 H -0.271 1.271 23 H -0.254 1.254 24 C -0.207 4.207 25 C -0.053 4.053 26 H 0.071 0.929 27 H 0.062 0.938 28 H 0.078 0.922 29 H 0.390 0.610 30 H 0.097 0.903 31 H 0.091 0.909 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.143 0.857 35 H 0.140 0.860 36 H 0.141 0.859 37 H 0.119 0.881 38 H 0.273 0.727 39 H 0.114 0.886 40 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.872 -2.795 3.213 29.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.043 3.957 3 H 0.111 0.889 4 O -0.394 6.394 5 C -0.177 4.177 6 C -0.011 4.011 7 O -0.273 6.273 8 C 0.304 3.696 9 O -0.429 6.429 10 C -0.084 4.084 11 C -0.160 4.160 12 C -0.074 4.074 13 C -0.264 4.264 14 C 0.065 3.935 15 O -0.138 6.138 16 C -0.491 4.491 17 H 0.119 0.881 18 C -0.222 4.222 19 N -0.558 5.558 20 Si 0.840 3.160 21 H -0.185 1.185 22 H -0.196 1.196 23 H -0.178 1.178 24 C -0.226 4.226 25 C -0.071 4.071 26 H 0.090 0.910 27 H 0.081 0.919 28 H 0.097 0.903 29 H 0.240 0.760 30 H 0.116 0.884 31 H 0.109 0.891 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.161 0.839 35 H 0.158 0.842 36 H 0.159 0.841 37 H 0.137 0.863 38 H 0.082 0.918 39 H 0.132 0.868 40 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -28.074 -1.786 3.462 28.343 hybrid contribution 0.974 -0.565 0.396 1.194 sum -27.099 -2.352 3.858 27.473 Atomic orbital electron populations 1.22414 0.93997 1.03666 1.03384 1.21908 0.94433 0.96318 0.83014 0.88930 1.86599 1.77748 1.30575 1.44492 1.22297 0.91070 1.03778 1.00509 1.23113 0.96350 0.96417 0.85208 1.86468 1.24449 1.70515 1.45851 1.24428 0.80229 0.77399 0.87530 1.90728 1.61278 1.43349 1.47591 1.20237 0.89707 1.04011 0.94467 1.19213 0.94525 0.97422 1.04868 1.20969 0.91823 0.98703 0.95898 1.21238 0.96498 1.00846 1.07853 1.19982 0.84358 0.94975 0.94177 1.83940 1.13829 1.43153 1.72892 1.21834 0.89317 1.00504 1.37431 0.88128 1.26635 0.96705 1.01489 0.97348 1.70186 1.09944 1.32314 1.43373 0.84563 0.77013 0.75812 0.78656 1.18525 1.19563 1.17799 1.20452 0.94264 1.00813 1.07107 1.20914 0.92410 0.96790 0.97008 0.90970 0.91909 0.90275 0.76037 0.88416 0.89069 0.92203 0.92319 0.83924 0.84209 0.84081 0.86291 0.91794 0.86775 0.83215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.19 9.54 71.99 0.69 -0.50 16 2 C 0.10 1.13 3.59 30.60 0.11 1.24 16 3 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 4 O -0.59 -8.59 12.88 -148.98 -1.92 -10.50 16 5 C -0.14 -1.52 5.27 30.59 0.16 -1.36 16 6 C 0.06 1.21 5.36 71.98 0.39 1.60 16 7 O -0.36 -7.50 10.22 -51.37 -0.53 -8.02 16 8 C 0.46 11.90 7.95 71.24 0.57 12.46 16 9 O -0.54 -19.36 15.78 21.95 0.35 -19.01 16 10 C -0.05 -0.97 5.94 29.10 0.17 -0.80 16 11 C -0.16 -5.01 4.38 -19.84 -0.09 -5.10 16 12 C -0.06 -2.00 9.69 22.25 0.22 -1.78 16 13 C -0.25 -11.14 9.17 22.39 0.21 -10.94 16 14 C 0.12 6.00 6.65 22.58 0.15 6.15 16 15 O -0.23 -14.41 9.76 -22.72 -0.22 -14.63 16 16 C -0.41 -24.83 9.49 67.92 0.64 -24.19 16 17 H 0.10 5.54 5.20 -2.91 -0.02 5.52 16 18 C -0.02 -1.41 5.49 84.84 0.47 -0.95 16 19 N -0.92 -57.55 13.67 21.62 0.30 -57.25 16 20 Si 1.02 43.73 29.55 68.60 2.03 45.76 16 21 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 22 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 23 H -0.25 -10.18 7.11 99.48 0.71 -9.47 16 24 C -0.21 -9.21 9.99 22.39 0.22 -8.98 16 25 C -0.05 -1.84 9.69 22.25 0.22 -1.63 16 26 H 0.07 0.33 8.14 -2.39 -0.02 0.31 16 27 H 0.06 0.49 8.14 -2.39 -0.02 0.48 16 28 H 0.08 0.38 8.14 -2.38 -0.02 0.36 16 29 H 0.39 2.75 9.04 -74.06 -0.67 2.08 16 30 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.09 0.79 8.14 -2.38 -0.02 0.77 16 32 H 0.06 1.35 7.82 -2.38 -0.02 1.33 16 33 H 0.06 1.24 8.13 -2.39 -0.02 1.22 16 34 H 0.14 1.98 8.08 -2.39 -0.02 1.96 16 35 H 0.14 2.02 8.08 -2.39 -0.02 2.00 16 36 H 0.14 3.99 8.06 -2.91 -0.02 3.96 16 37 H 0.12 5.48 5.64 -2.91 -0.02 5.46 16 38 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 39 H 0.11 5.00 8.06 -2.91 -0.02 4.98 16 40 H 0.15 3.95 8.06 -2.91 -0.02 3.93 16 Total: -1.00 -81.51 348.72 4.51 -77.00 By element: Atomic # 1 Polarization: 21.05 SS G_CDS: 0.39 Total: 21.43 kcal Atomic # 6 Polarization: -38.89 SS G_CDS: 4.12 Total: -34.77 kcal Atomic # 7 Polarization: -57.55 SS G_CDS: 0.30 Total: -57.25 kcal Atomic # 8 Polarization: -49.85 SS G_CDS: -2.32 Total: -52.17 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -81.51 4.51 -77.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849728473.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.647 kcal (2) G-P(sol) polarization free energy of solvation -81.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds