Wall clock time and date at job start Tue Mar 31 2020 07:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35895 * 117.00129 * 2 1 4 4 C 1.38759 * 120.05350 * 0.02562 * 3 2 1 5 5 C 1.38126 * 119.94094 * 179.97438 * 4 3 2 6 6 C 1.38290 * 120.05768 * 359.97408 * 5 4 3 7 7 C 1.38245 * 120.10982 * 0.02562 * 6 5 4 8 8 C 1.50699 * 119.96768 * 179.97438 * 7 6 5 9 9 H 1.09004 * 109.46903 * 159.99822 * 8 7 6 10 10 O 1.42897 * 109.47332 * 40.00112 * 8 7 6 11 11 C 1.42901 * 114.00131 * 149.99878 * 10 8 7 12 12 C 1.50695 * 109.47377 * 279.99748 * 8 7 6 13 13 O 1.20826 * 120.00130 * 115.00094 * 12 8 7 14 14 O 1.34233 * 120.00326 * 295.00584 * 12 8 7 15 15 C 1.45197 * 117.00059 * 179.97438 * 14 12 8 16 16 H 1.08999 * 109.47270 * 330.00269 * 15 14 12 17 17 C 1.53006 * 109.47016 * 89.99919 * 15 14 12 18 18 C 1.50700 * 109.47146 * 209.99799 * 15 14 12 19 19 H 1.08004 * 120.00112 * 0.02562 * 18 15 14 20 20 C 1.37875 * 120.00195 * 180.02562 * 18 15 14 21 21 N 1.31511 * 119.99851 * 0.02562 * 20 18 15 22 22 Si 1.86801 * 120.00025 * 179.97438 * 20 18 15 23 23 H 1.48499 * 109.46861 * 60.00199 * 22 20 18 24 24 H 1.48506 * 109.46996 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47312 * 299.99946 * 22 20 18 26 26 C 1.38164 * 120.05645 * 0.02562 * 7 6 5 27 27 H 1.09001 * 109.47177 * 299.99686 * 1 2 3 28 28 H 1.09002 * 109.46778 * 59.99753 * 1 2 3 29 29 H 1.08997 * 109.46967 * 179.97438 * 1 2 3 30 30 H 1.07998 * 120.02743 * 359.97438 * 4 3 2 31 31 H 1.08005 * 119.97091 * 180.02562 * 5 4 3 32 32 H 1.07995 * 119.94278 * 180.27458 * 6 5 4 33 33 H 1.09000 * 109.47283 * 180.02562 * 11 10 8 34 34 H 1.09003 * 109.47029 * 299.99686 * 11 10 8 35 35 H 1.08998 * 109.47087 * 59.99778 * 11 10 8 36 36 H 1.08996 * 109.47368 * 299.99550 * 17 15 14 37 37 H 1.08999 * 109.46816 * 60.00071 * 17 15 14 38 38 H 1.08998 * 109.46592 * 179.97438 * 17 15 14 39 39 H 0.97003 * 120.00240 * 180.02562 * 21 20 18 40 40 H 1.08001 * 120.02528 * 179.97438 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9209 3.6047 0.0011 6 6 3.3020 3.6758 0.0016 7 6 4.0560 2.5170 0.0011 8 6 5.5608 2.5982 0.0011 9 1 5.9756 1.6533 0.3522 10 8 5.9810 3.6540 0.8676 11 6 7.2543 3.4334 1.4775 12 6 6.0492 2.8721 -1.3980 13 8 6.6124 3.9113 -1.6486 14 8 5.8584 1.9618 -2.3658 15 6 6.3545 2.2932 -3.6895 16 1 6.3241 3.3738 -3.8290 17 6 7.7962 1.8010 -3.8318 18 6 5.4915 1.6278 -4.7305 19 1 4.6537 1.0173 -4.4275 20 6 5.7715 1.7984 -6.0697 21 7 6.7920 2.5414 -6.4387 22 14 4.7022 0.9731 -7.3600 23 1 3.3028 1.4507 -7.2224 24 1 5.2095 1.3122 -8.7139 25 1 4.7438 -0.4990 -7.1696 26 6 3.4311 1.2848 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 0.2128 2.3203 0.0005 31 1 1.3340 4.5114 0.0019 32 1 3.7923 4.6380 0.0065 33 1 7.5009 4.2789 2.1197 34 1 7.2182 2.5223 2.0748 35 1 8.0149 3.3305 0.7035 36 1 8.4205 2.2822 -3.0790 37 1 7.8266 0.7204 -3.6924 38 1 8.1684 2.0494 -4.8257 39 1 6.9888 2.6618 -7.3809 40 1 4.0207 0.3799 -0.0013 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850842873.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:33 Heat of formation + Delta-G solvation = -140.359927 kcal Electronic energy + Delta-G solvation = -23980.480027 eV Core-core repulsion = 20340.374369 eV Total energy + Delta-G solvation = -3640.105659 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.37065 -39.59237 -37.95152 -36.98677 -35.47993 -33.27319 -32.06352 -30.41890 -29.57544 -27.70795 -27.19976 -25.96026 -25.28326 -22.56767 -22.23852 -21.10140 -19.68898 -18.12209 -17.19736 -16.90517 -16.38760 -16.04650 -15.79880 -15.69012 -15.59464 -15.20579 -14.57018 -14.53508 -13.87982 -13.80446 -13.41457 -12.94332 -12.79217 -12.52485 -12.20674 -11.96101 -11.81667 -11.51614 -11.36787 -11.19799 -11.10707 -11.03735 -10.84152 -10.75325 -10.47531 -10.37740 -10.25468 -9.53628 -9.38992 -8.90613 -8.73086 -8.46715 -8.11829 -6.16287 -4.22809 1.27743 1.55388 2.84870 3.17720 3.27868 3.30712 3.32914 3.44779 3.68866 4.14551 4.37102 4.69740 4.79619 4.97138 5.04681 5.08405 5.09539 5.16646 5.33621 5.35828 5.45771 5.46846 5.55285 5.63473 5.70663 5.72744 6.01343 6.31826 6.50289 6.57904 6.63115 6.75446 6.87331 6.90751 7.02127 7.15833 7.41285 7.61231 7.73266 7.94242 8.15457 8.63570 8.89609 9.42248 10.91192 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.011229 B = 0.005740 C = 0.004157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2492.869388 B = 4877.120269 C = 6733.666518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.316 6.316 3 C 0.123 3.877 4 C -0.201 4.201 5 C -0.085 4.085 6 C -0.121 4.121 7 C -0.044 4.044 8 C 0.141 3.859 9 H 0.103 0.897 10 O -0.352 6.352 11 C 0.027 3.973 12 C 0.434 3.566 13 O -0.503 6.503 14 O -0.350 6.350 15 C 0.216 3.784 16 H 0.046 0.954 17 C -0.155 4.155 18 C -0.519 4.519 19 H 0.068 0.932 20 C 0.063 3.937 21 N -0.890 5.890 22 Si 0.911 3.089 23 H -0.275 1.275 24 H -0.285 1.285 25 H -0.274 1.274 26 C -0.122 4.122 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.098 0.902 30 H 0.127 0.873 31 H 0.126 0.874 32 H 0.131 0.869 33 H 0.092 0.908 34 H 0.045 0.955 35 H 0.048 0.952 36 H 0.014 0.986 37 H 0.037 0.963 38 H 0.100 0.900 39 H 0.266 0.734 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.452 -2.219 15.739 18.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.230 6.230 3 C 0.078 3.922 4 C -0.219 4.219 5 C -0.103 4.103 6 C -0.139 4.139 7 C -0.045 4.045 8 C 0.081 3.919 9 H 0.121 0.879 10 O -0.270 6.270 11 C -0.069 4.069 12 C 0.275 3.725 13 O -0.392 6.392 14 O -0.266 6.266 15 C 0.163 3.837 16 H 0.064 0.936 17 C -0.212 4.212 18 C -0.557 4.557 19 H 0.087 0.913 20 C -0.139 4.139 21 N -0.528 5.528 22 Si 0.738 3.262 23 H -0.200 1.200 24 H -0.210 1.210 25 H -0.199 1.199 26 C -0.140 4.140 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.116 0.884 30 H 0.145 0.855 31 H 0.144 0.856 32 H 0.149 0.851 33 H 0.110 0.890 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.034 0.966 37 H 0.056 0.944 38 H 0.118 0.882 39 H 0.076 0.924 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -8.200 -1.886 15.464 17.604 hybrid contribution -0.402 -0.322 -0.923 1.057 sum -8.602 -2.208 14.541 17.038 Atomic orbital electron populations 1.23032 0.78609 1.03782 1.01257 1.86069 1.21176 1.26838 1.88907 1.18794 0.91967 0.84175 0.97220 1.21244 0.99888 0.92452 1.08354 1.20891 0.94322 0.97034 0.98024 1.20947 0.93589 0.98494 1.00861 1.18956 0.92011 0.93280 1.00209 1.20269 0.92268 0.92510 0.86858 0.87933 1.87979 1.36185 1.42923 1.59915 1.22916 0.84986 1.01798 0.97192 1.23741 0.77213 0.82950 0.88575 1.90608 1.39467 1.26459 1.82671 1.86497 1.72952 1.45332 1.21842 1.20644 0.91894 0.97846 0.73280 0.93620 1.22169 0.96955 0.99096 1.03017 1.20982 1.13610 1.31517 0.89565 0.91331 1.24874 0.95601 0.95231 0.98224 1.69886 1.27588 1.38261 1.17061 0.86343 0.80352 0.79785 0.79725 1.19999 1.21020 1.19904 1.20117 0.91611 0.97723 1.04565 0.92845 0.92583 0.88369 0.85518 0.85557 0.85136 0.88989 0.93687 0.93319 0.96643 0.94380 0.88164 0.92371 0.84616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.24 16 2 O -0.32 -4.23 10.50 -19.41 -0.20 -4.44 16 3 C 0.12 1.78 6.69 -39.21 -0.26 1.52 16 4 C -0.20 -2.58 9.04 -39.43 -0.36 -2.94 16 5 C -0.08 -1.13 10.04 -39.60 -0.40 -1.52 16 6 C -0.12 -1.88 9.35 -39.56 -0.37 -2.25 16 7 C -0.04 -0.72 4.95 -104.65 -0.52 -1.24 16 8 C 0.14 2.37 2.83 -29.04 -0.08 2.29 16 9 H 0.10 1.43 7.65 -51.93 -0.40 1.04 16 10 O -0.35 -5.62 9.21 -55.14 -0.51 -6.13 16 11 C 0.03 0.34 10.81 101.05 1.09 1.43 16 12 C 0.43 9.53 7.19 36.00 0.26 9.79 16 13 O -0.50 -12.42 15.73 -25.46 -0.40 -12.82 16 14 O -0.35 -8.59 9.85 -39.27 -0.39 -8.97 16 15 C 0.22 5.94 2.56 -27.88 -0.07 5.87 16 16 H 0.05 1.39 7.16 -51.93 -0.37 1.02 16 17 C -0.15 -3.98 9.33 37.16 0.35 -3.63 16 18 C -0.52 -14.88 8.90 -34.44 -0.31 -15.19 16 19 H 0.07 1.95 7.81 -52.48 -0.41 1.54 16 20 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 21 N -0.89 -25.62 11.32 55.43 0.63 -24.99 16 22 Si 0.91 21.44 29.54 -169.99 -5.02 16.42 16 23 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 26 C -0.12 -1.88 9.61 -39.43 -0.38 -2.26 16 27 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 28 H 0.06 0.47 7.66 -51.93 -0.40 0.07 16 29 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.13 1.26 6.30 -52.49 -0.33 0.93 16 31 H 0.13 1.33 8.06 -52.48 -0.42 0.91 16 32 H 0.13 2.05 7.77 -52.49 -0.41 1.64 16 33 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.04 0.44 8.09 -51.93 -0.42 0.02 16 35 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 37 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.10 2.75 6.07 -51.93 -0.32 2.43 16 39 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 40 H 0.14 1.93 8.04 -52.49 -0.42 1.51 16 LS Contribution 345.13 15.07 5.20 5.20 Total: -1.00 -33.27 345.13 -6.38 -39.65 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -5.54 Total: 1.31 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: -0.15 Total: -5.24 kcal Atomic # 7 Polarization: -25.62 SS G_CDS: 0.63 Total: -24.99 kcal Atomic # 8 Polarization: -30.86 SS G_CDS: -1.50 Total: -32.36 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.27 -6.38 -39.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850842873.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.711 kcal (2) G-P(sol) polarization free energy of solvation -33.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds