Wall clock time and date at job start Tue Mar 31 2020 07:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35897 * 116.99912 * 2 1 4 4 C 1.38751 * 120.05785 * 0.02562 * 3 2 1 5 5 C 1.38131 * 119.94732 * 179.97438 * 4 3 2 6 6 C 1.38288 * 120.04919 * 359.74625 * 5 4 3 7 7 C 1.38245 * 120.11331 * 0.50862 * 6 5 4 8 8 C 1.50700 * 119.96968 * 179.76965 * 7 6 5 9 9 H 1.09004 * 109.47147 * 204.72378 * 8 7 6 10 10 O 1.42898 * 109.47220 * 324.72298 * 8 7 6 11 11 C 1.42901 * 114.00109 * 270.00218 * 10 8 7 12 12 C 1.50704 * 109.47089 * 84.72320 * 8 7 6 13 13 O 1.20826 * 119.99847 * 244.99553 * 12 8 7 14 14 O 1.34229 * 119.99888 * 64.99912 * 12 8 7 15 15 C 1.45206 * 116.99848 * 179.97438 * 14 12 8 16 16 H 1.08998 * 109.46660 * 329.99611 * 15 14 12 17 17 C 1.52997 * 109.47147 * 89.99847 * 15 14 12 18 18 C 1.50697 * 109.47064 * 210.00247 * 15 14 12 19 19 H 1.07998 * 120.00039 * 359.97438 * 18 15 14 20 20 C 1.37880 * 119.99815 * 179.97438 * 18 15 14 21 21 N 1.31508 * 119.99915 * 359.97438 * 20 18 15 22 22 Si 1.86805 * 119.99777 * 179.97438 * 20 18 15 23 23 H 1.48506 * 109.46954 * 59.99790 * 22 20 18 24 24 H 1.48496 * 109.46873 * 179.97438 * 22 20 18 25 25 H 1.48506 * 109.47158 * 300.00368 * 22 20 18 26 26 C 1.38162 * 120.05693 * 359.48872 * 7 6 5 27 27 H 1.09000 * 109.47099 * 300.00197 * 1 2 3 28 28 H 1.09003 * 109.47250 * 59.99874 * 1 2 3 29 29 H 1.08993 * 109.47298 * 180.02562 * 1 2 3 30 30 H 1.08004 * 120.03040 * 359.97438 * 4 3 2 31 31 H 1.07992 * 119.97299 * 180.02562 * 5 4 3 32 32 H 1.07996 * 119.94131 * 180.27968 * 6 5 4 33 33 H 1.08997 * 109.47138 * 59.99407 * 11 10 8 34 34 H 1.08996 * 109.46966 * 180.02562 * 11 10 8 35 35 H 1.09000 * 109.46968 * 299.99774 * 11 10 8 36 36 H 1.09002 * 109.47153 * 179.97438 * 17 15 14 37 37 H 1.09001 * 109.46832 * 60.00119 * 17 15 14 38 38 H 1.09004 * 109.47261 * 300.00100 * 17 15 14 39 39 H 0.97001 * 119.99839 * 180.02562 * 21 20 18 40 40 H 1.07997 * 120.03202 * 180.27413 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9209 3.6048 0.0011 6 6 3.3019 3.6758 0.0064 7 6 4.0560 2.5171 0.0005 8 6 5.5608 2.5982 0.0011 9 1 5.9739 1.6878 -0.4334 10 8 5.9773 3.7260 -0.7712 11 6 6.1874 3.4374 -2.1549 12 6 6.0552 2.7484 1.4168 13 8 6.6198 3.7617 1.7551 14 8 5.8685 1.7566 2.3017 15 6 6.3714 1.9702 3.6471 16 1 7.2439 2.6224 3.6094 17 6 5.2827 2.6236 4.5007 18 6 6.7593 0.6467 4.2543 19 1 6.6396 -0.2639 3.6862 20 6 7.2672 0.5984 5.5353 21 7 7.4136 1.7074 6.2268 22 14 7.7475 -1.0423 6.2883 23 1 8.8035 -1.6772 5.4594 24 1 8.2630 -0.8237 7.6636 25 1 6.5583 -1.9302 6.3401 26 6 3.4311 1.2848 0.0001 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 0.2128 2.3204 0.0005 31 1 1.3340 4.5114 0.0019 32 1 3.7922 4.6380 0.0113 33 1 5.2597 3.0713 -2.5946 34 1 6.5019 4.3441 -2.6715 35 1 6.9614 2.6763 -2.2539 36 1 5.6600 2.7835 5.5107 37 1 4.4102 1.9713 4.5382 38 1 5.0021 3.5809 4.0614 39 1 7.7712 1.6734 7.1278 40 1 4.0206 0.3799 0.0000 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850842874.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:36 Heat of formation + Delta-G solvation = -138.833179 kcal Electronic energy + Delta-G solvation = -23969.108873 eV Core-core repulsion = 20329.069419 eV Total energy + Delta-G solvation = -3640.039454 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.40970 -39.55318 -38.10244 -36.91618 -35.51950 -33.26643 -32.00998 -30.42513 -29.57303 -27.90120 -27.30804 -25.80751 -25.27227 -22.65938 -22.22705 -21.13778 -19.64911 -18.14465 -17.14983 -16.98261 -16.28076 -16.05813 -15.83269 -15.73757 -15.59958 -15.37575 -14.57666 -14.56545 -13.89440 -13.81683 -13.44413 -13.02005 -12.82296 -12.52461 -12.20628 -12.00924 -11.82946 -11.67187 -11.26838 -11.19347 -11.14818 -11.02691 -10.92756 -10.81490 -10.36831 -10.25625 -10.04396 -9.57685 -9.49729 -8.89218 -8.80176 -8.46477 -8.17715 -6.15828 -4.22772 1.22355 1.49070 2.89021 3.03817 3.26697 3.28430 3.31839 3.36248 3.71225 4.26970 4.45488 4.60243 4.74895 4.95165 5.00396 5.03764 5.07991 5.17115 5.31126 5.33129 5.35044 5.41424 5.51294 5.58279 5.62212 5.67555 5.97406 6.27272 6.43667 6.54146 6.66468 6.70351 6.92061 6.94816 7.04447 7.18200 7.37003 7.61820 7.75369 7.95652 8.16059 8.65132 8.89892 9.42263 10.91618 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.013463 B = 0.004881 C = 0.004026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.254688 B = 5735.184977 C = 6952.920762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.316 6.316 3 C 0.123 3.877 4 C -0.202 4.202 5 C -0.086 4.086 6 C -0.124 4.124 7 C -0.072 4.072 8 C 0.139 3.861 9 H 0.104 0.896 10 O -0.353 6.353 11 C 0.028 3.972 12 C 0.459 3.541 13 O -0.497 6.497 14 O -0.349 6.349 15 C 0.217 3.783 16 H 0.047 0.953 17 C -0.154 4.154 18 C -0.520 4.520 19 H 0.069 0.931 20 C 0.063 3.937 21 N -0.889 5.889 22 Si 0.912 3.088 23 H -0.274 1.274 24 H -0.285 1.285 25 H -0.274 1.274 26 C -0.122 4.122 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.098 0.902 30 H 0.127 0.873 31 H 0.126 0.874 32 H 0.131 0.869 33 H 0.045 0.955 34 H 0.091 0.909 35 H 0.046 0.954 36 H 0.099 0.901 37 H 0.036 0.964 38 H 0.016 0.984 39 H 0.267 0.733 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.058 0.109 -15.801 19.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.229 6.229 3 C 0.078 3.922 4 C -0.221 4.221 5 C -0.104 4.104 6 C -0.142 4.142 7 C -0.072 4.072 8 C 0.080 3.920 9 H 0.122 0.878 10 O -0.271 6.271 11 C -0.068 4.068 12 C 0.299 3.701 13 O -0.385 6.385 14 O -0.265 6.265 15 C 0.165 3.835 16 H 0.065 0.935 17 C -0.211 4.211 18 C -0.558 4.558 19 H 0.087 0.913 20 C -0.139 4.139 21 N -0.527 5.527 22 Si 0.739 3.261 23 H -0.200 1.200 24 H -0.210 1.210 25 H -0.199 1.199 26 C -0.140 4.140 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.117 0.883 30 H 0.144 0.856 31 H 0.144 0.856 32 H 0.149 0.851 33 H 0.064 0.936 34 H 0.110 0.890 35 H 0.065 0.935 36 H 0.118 0.882 37 H 0.056 0.944 38 H 0.035 0.965 39 H 0.077 0.923 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -11.703 0.454 -15.369 19.323 hybrid contribution -0.046 -0.771 0.442 0.890 sum -11.748 -0.317 -14.927 18.999 Atomic orbital electron populations 1.23032 0.78621 1.03824 1.01201 1.86086 1.21161 1.26833 1.88847 1.18860 0.92060 0.84168 0.97116 1.21248 0.99871 0.92472 1.08502 1.20891 0.94344 0.96981 0.98188 1.20947 0.93506 0.98562 1.01229 1.19689 0.94075 0.93217 1.00250 1.20206 0.90706 0.91469 0.89662 0.87824 1.88018 1.87839 1.31523 1.19687 1.22909 0.99983 1.02271 0.81648 1.22652 0.77170 0.82749 0.87503 1.90619 1.38847 1.29709 1.79315 1.86478 1.72996 1.42292 1.24781 1.20672 0.93233 0.97923 0.71658 0.93515 1.22149 0.98636 0.96686 1.03671 1.20975 1.43131 0.92276 0.99465 0.91310 1.24880 0.95172 0.97459 0.96412 1.69892 1.44652 1.26605 1.11523 0.86329 0.78968 0.82764 0.78037 1.19974 1.21034 1.19934 1.20226 0.91575 0.98022 1.04227 0.92626 0.92870 0.88329 0.85562 0.85638 0.85083 0.93645 0.89021 0.93548 0.88229 0.94447 0.96510 0.92345 0.84528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.32 -4.13 10.50 -19.42 -0.20 -4.33 16 3 C 0.12 1.72 6.69 -39.22 -0.26 1.46 16 4 C -0.20 -2.47 9.04 -39.43 -0.36 -2.83 16 5 C -0.09 -1.07 10.04 -39.60 -0.40 -1.47 16 6 C -0.12 -1.83 9.35 -39.56 -0.37 -2.20 16 7 C -0.07 -1.12 4.93 -104.65 -0.52 -1.64 16 8 C 0.14 2.34 2.84 -29.03 -0.08 2.26 16 9 H 0.10 1.47 7.70 -51.93 -0.40 1.07 16 10 O -0.35 -5.63 9.04 -55.14 -0.50 -6.13 16 11 C 0.03 0.31 10.81 101.05 1.09 1.40 16 12 C 0.46 10.22 7.25 36.01 0.26 10.48 16 13 O -0.50 -12.58 15.73 -25.46 -0.40 -12.98 16 14 O -0.35 -8.57 9.85 -39.25 -0.39 -8.96 16 15 C 0.22 6.00 2.56 -27.89 -0.07 5.92 16 16 H 0.05 1.42 7.16 -51.93 -0.37 1.05 16 17 C -0.15 -4.04 9.33 37.16 0.35 -3.70 16 18 C -0.52 -14.82 8.90 -34.44 -0.31 -15.12 16 19 H 0.07 1.92 7.81 -52.49 -0.41 1.51 16 20 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 21 N -0.89 -25.57 11.32 55.43 0.63 -24.94 16 22 Si 0.91 21.28 29.54 -169.99 -5.02 16.26 16 23 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 25 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 26 C -0.12 -1.84 9.62 -39.43 -0.38 -2.22 16 27 H 0.06 0.44 7.66 -51.93 -0.40 0.04 16 28 H 0.05 0.36 7.66 -51.93 -0.40 -0.03 16 29 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.13 1.19 6.30 -52.48 -0.33 0.85 16 31 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 32 H 0.13 1.94 7.63 -52.49 -0.40 1.54 16 33 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.05 0.45 8.08 -51.93 -0.42 0.03 16 36 H 0.10 2.76 6.07 -51.93 -0.32 2.45 16 37 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 40 H 0.14 1.97 8.06 -52.49 -0.42 1.54 16 LS Contribution 344.96 15.07 5.20 5.20 Total: -1.00 -33.34 344.96 -6.37 -39.71 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -5.54 Total: 0.94 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: -0.14 Total: -4.77 kcal Atomic # 7 Polarization: -25.57 SS G_CDS: 0.63 Total: -24.94 kcal Atomic # 8 Polarization: -30.91 SS G_CDS: -1.49 Total: -32.40 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.34 -6.37 -39.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850842874.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.126 kcal (2) G-P(sol) polarization free energy of solvation -33.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds