Wall clock time and date at job start Tue Mar 31 2020 07:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35897 * 116.99912 * 2 1 4 4 C 1.38751 * 120.05785 * 0.02562 * 3 2 1 5 5 C 1.38131 * 119.94732 * 179.97438 * 4 3 2 6 6 C 1.38288 * 120.04919 * 359.74625 * 5 4 3 7 7 C 1.38245 * 120.11331 * 0.50862 * 6 5 4 8 8 C 1.50700 * 119.96968 * 179.76965 * 7 6 5 9 9 H 1.09004 * 109.47147 * 204.72378 * 8 7 6 10 10 O 1.42898 * 109.47220 * 324.72298 * 8 7 6 11 11 C 1.42901 * 114.00109 * 270.00218 * 10 8 7 12 12 C 1.50704 * 109.47089 * 84.72320 * 8 7 6 13 13 O 1.20826 * 119.99847 * 244.99553 * 12 8 7 14 14 O 1.34229 * 119.99888 * 64.99912 * 12 8 7 15 15 C 1.45206 * 116.99848 * 179.97438 * 14 12 8 16 16 H 1.08998 * 109.46660 * 329.99611 * 15 14 12 17 17 C 1.52997 * 109.47147 * 89.99847 * 15 14 12 18 18 C 1.50697 * 109.47064 * 210.00247 * 15 14 12 19 19 H 1.07998 * 120.00039 * 359.97438 * 18 15 14 20 20 C 1.37880 * 119.99815 * 179.97438 * 18 15 14 21 21 N 1.31508 * 119.99915 * 359.97438 * 20 18 15 22 22 Si 1.86805 * 119.99777 * 179.97438 * 20 18 15 23 23 H 1.48506 * 109.46954 * 59.99790 * 22 20 18 24 24 H 1.48496 * 109.46873 * 179.97438 * 22 20 18 25 25 H 1.48506 * 109.47158 * 300.00368 * 22 20 18 26 26 C 1.38162 * 120.05693 * 359.48872 * 7 6 5 27 27 H 1.09000 * 109.47099 * 300.00197 * 1 2 3 28 28 H 1.09003 * 109.47250 * 59.99874 * 1 2 3 29 29 H 1.08993 * 109.47298 * 180.02562 * 1 2 3 30 30 H 1.08004 * 120.03040 * 359.97438 * 4 3 2 31 31 H 1.07992 * 119.97299 * 180.02562 * 5 4 3 32 32 H 1.07996 * 119.94131 * 180.27968 * 6 5 4 33 33 H 1.08997 * 109.47138 * 59.99407 * 11 10 8 34 34 H 1.08996 * 109.46966 * 180.02562 * 11 10 8 35 35 H 1.09000 * 109.46968 * 299.99774 * 11 10 8 36 36 H 1.09002 * 109.47153 * 179.97438 * 17 15 14 37 37 H 1.09001 * 109.46832 * 60.00119 * 17 15 14 38 38 H 1.09004 * 109.47261 * 300.00100 * 17 15 14 39 39 H 0.97001 * 119.99839 * 180.02562 * 21 20 18 40 40 H 1.07997 * 120.03202 * 180.27413 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9209 3.6048 0.0011 6 6 3.3019 3.6758 0.0064 7 6 4.0560 2.5171 0.0005 8 6 5.5608 2.5982 0.0011 9 1 5.9739 1.6878 -0.4334 10 8 5.9773 3.7260 -0.7712 11 6 6.1874 3.4374 -2.1549 12 6 6.0552 2.7484 1.4168 13 8 6.6198 3.7617 1.7551 14 8 5.8685 1.7566 2.3017 15 6 6.3714 1.9702 3.6471 16 1 7.2439 2.6224 3.6094 17 6 5.2827 2.6236 4.5007 18 6 6.7593 0.6467 4.2543 19 1 6.6396 -0.2639 3.6862 20 6 7.2672 0.5984 5.5353 21 7 7.4136 1.7074 6.2268 22 14 7.7475 -1.0423 6.2883 23 1 8.8035 -1.6772 5.4594 24 1 8.2630 -0.8237 7.6636 25 1 6.5583 -1.9302 6.3401 26 6 3.4311 1.2848 0.0001 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 0.2128 2.3204 0.0005 31 1 1.3340 4.5114 0.0019 32 1 3.7922 4.6380 0.0113 33 1 5.2597 3.0713 -2.5946 34 1 6.5019 4.3441 -2.6715 35 1 6.9614 2.6763 -2.2539 36 1 5.6600 2.7835 5.5107 37 1 4.4102 1.9713 4.5382 38 1 5.0021 3.5809 4.0614 39 1 7.7712 1.6734 7.1278 40 1 4.0206 0.3799 0.0000 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850842874.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:35 Heat of formation + Delta-G solvation = -158.882797 kcal Electronic energy + Delta-G solvation = -23969.978290 eV Core-core repulsion = 20329.069419 eV Total energy + Delta-G solvation = -3640.908871 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.76655 -40.92252 -39.39554 -38.00608 -37.41063 -35.36651 -33.18785 -31.72152 -31.34362 -29.05266 -28.08106 -27.48267 -26.87496 -24.05104 -23.55448 -22.56734 -21.38276 -19.33230 -18.87328 -18.60974 -17.73071 -17.49793 -17.09327 -16.98422 -16.61813 -16.57703 -16.36019 -16.09668 -15.25394 -14.83938 -14.63631 -14.37949 -14.32296 -13.89744 -13.73849 -13.49165 -13.20590 -13.01726 -12.84841 -12.82690 -12.72292 -12.41501 -12.34391 -12.17236 -12.04849 -11.86035 -11.63991 -11.47874 -11.03635 -10.89030 -10.60572 -9.93316 -9.20236 -8.28990 -6.46354 0.14071 0.43861 1.19874 1.40229 1.46153 1.50790 1.59788 2.34179 2.39158 2.63759 3.01047 3.10433 3.44981 3.75133 3.83069 3.91317 4.12116 4.31744 4.33193 4.43672 4.48147 4.49560 4.53010 4.53269 4.59941 4.75117 4.76330 4.78933 4.82182 4.95776 5.09420 5.25413 5.39637 5.46029 5.48360 5.57918 5.70094 5.86185 5.94262 6.02964 6.44928 6.57924 6.88966 7.24801 8.78857 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.013463 B = 0.004881 C = 0.004026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.254688 B = 5735.184977 C = 6952.920762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.336 6.336 3 C 0.116 3.884 4 C -0.195 4.195 5 C -0.081 4.081 6 C -0.141 4.141 7 C -0.085 4.085 8 C 0.153 3.847 9 H 0.128 0.872 10 O -0.377 6.377 11 C 0.021 3.979 12 C 0.452 3.548 13 O -0.535 6.535 14 O -0.352 6.352 15 C 0.219 3.781 16 H 0.008 0.992 17 C -0.139 4.139 18 C -0.548 4.548 19 H 0.069 0.931 20 C 0.017 3.983 21 N -0.917 5.917 22 Si 0.984 3.016 23 H -0.267 1.267 24 H -0.276 1.276 25 H -0.264 1.264 26 C -0.140 4.140 27 H 0.062 0.938 28 H 0.072 0.928 29 H 0.117 0.883 30 H 0.160 0.840 31 H 0.156 0.844 32 H 0.123 0.877 33 H 0.060 0.940 34 H 0.111 0.889 35 H 0.058 0.942 36 H 0.083 0.917 37 H 0.044 0.956 38 H 0.019 0.981 39 H 0.272 0.728 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.868 -1.093 -16.711 21.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.250 6.250 3 C 0.071 3.929 4 C -0.213 4.213 5 C -0.099 4.099 6 C -0.159 4.159 7 C -0.086 4.086 8 C 0.093 3.907 9 H 0.145 0.855 10 O -0.296 6.296 11 C -0.074 4.074 12 C 0.295 3.705 13 O -0.425 6.425 14 O -0.269 6.269 15 C 0.166 3.834 16 H 0.025 0.975 17 C -0.197 4.197 18 C -0.586 4.586 19 H 0.087 0.913 20 C -0.183 4.183 21 N -0.555 5.555 22 Si 0.807 3.193 23 H -0.192 1.192 24 H -0.201 1.201 25 H -0.188 1.188 26 C -0.159 4.159 27 H 0.080 0.920 28 H 0.091 0.909 29 H 0.136 0.864 30 H 0.177 0.823 31 H 0.174 0.826 32 H 0.141 0.859 33 H 0.078 0.922 34 H 0.129 0.871 35 H 0.076 0.924 36 H 0.102 0.898 37 H 0.063 0.937 38 H 0.038 0.962 39 H 0.081 0.919 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -13.531 -0.747 -16.313 21.208 hybrid contribution 0.452 -0.342 0.639 0.854 sum -13.079 -1.089 -15.674 20.443 Atomic orbital electron populations 1.23376 0.76237 1.05652 1.02426 1.86065 1.23678 1.26554 1.88667 1.19003 0.91890 0.85238 0.96781 1.21612 1.01482 0.91545 1.06703 1.21237 0.93543 0.98474 0.96619 1.21048 0.94746 0.97906 1.02219 1.19587 0.93085 0.93957 1.01967 1.20111 0.91781 0.92684 0.86093 0.85503 1.87983 1.88008 1.31574 1.22009 1.23205 1.01250 1.03855 0.79126 1.23863 0.75939 0.81471 0.89201 1.90587 1.40594 1.30963 1.80364 1.86471 1.73000 1.43335 1.24060 1.20398 0.92296 0.97263 0.73466 0.97465 1.21961 0.98353 0.96855 1.02529 1.21239 1.44551 0.92412 1.00369 0.91257 1.25849 0.94435 1.01497 0.96493 1.70014 1.44636 1.28903 1.11919 0.85215 0.78986 0.77843 0.77252 1.19192 1.20133 1.18829 1.20301 0.92632 0.97692 1.05267 0.91965 0.90930 0.86431 0.82298 0.82605 0.85885 0.92154 0.87088 0.92368 0.89829 0.93735 0.96184 0.91921 0.84774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.35 16 2 O -0.34 -8.17 10.50 -92.40 -0.97 -9.14 16 3 C 0.12 3.06 6.69 22.51 0.15 3.22 16 4 C -0.20 -4.22 9.04 22.37 0.20 -4.02 16 5 C -0.08 -1.84 10.04 22.26 0.22 -1.61 16 6 C -0.14 -4.05 9.35 22.28 0.21 -3.84 16 7 C -0.09 -2.66 4.93 -19.88 -0.10 -2.76 16 8 C 0.15 5.18 2.84 29.10 0.08 5.26 16 9 H 0.13 3.59 7.70 -2.38 -0.02 3.57 16 10 O -0.38 -12.04 9.04 -129.95 -1.17 -13.21 16 11 C 0.02 0.43 10.81 113.37 1.23 1.65 16 12 C 0.45 20.86 7.25 71.24 0.52 21.38 16 13 O -0.54 -28.39 15.73 28.38 0.45 -27.94 16 14 O -0.35 -17.89 9.85 -51.40 -0.51 -18.40 16 15 C 0.22 12.53 2.56 29.85 0.08 12.61 16 16 H 0.01 0.48 7.16 -2.39 -0.02 0.47 16 17 C -0.14 -7.54 9.33 71.98 0.67 -6.87 16 18 C -0.55 -31.81 8.90 25.60 0.23 -31.58 16 19 H 0.07 3.91 7.81 -2.91 -0.02 3.89 16 20 C 0.02 0.95 5.30 84.66 0.45 1.40 16 21 N -0.92 -53.54 11.32 21.45 0.24 -53.30 16 22 Si 0.98 43.32 29.54 68.60 2.03 45.35 16 23 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 24 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 25 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 26 C -0.14 -4.18 9.62 22.37 0.22 -3.96 16 27 H 0.06 0.79 7.66 -2.39 -0.02 0.77 16 28 H 0.07 0.74 7.66 -2.39 -0.02 0.72 16 29 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.16 2.32 6.30 -2.91 -0.02 2.30 16 31 H 0.16 2.51 8.06 -2.91 -0.02 2.49 16 32 H 0.12 3.66 7.63 -2.91 -0.02 3.64 16 33 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.06 1.05 8.08 -2.39 -0.02 1.03 16 36 H 0.08 4.78 6.07 -2.39 -0.01 4.77 16 37 H 0.04 2.27 8.14 -2.39 -0.02 2.26 16 38 H 0.02 1.01 8.14 -2.38 -0.02 0.99 16 39 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 40 H 0.13 3.90 8.06 -2.91 -0.02 3.87 16 Total: -1.00 -74.10 344.96 6.36 -67.74 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: 1.04 Total: 16.67 kcal Atomic # 6 Polarization: -13.03 SS G_CDS: 5.26 Total: -7.77 kcal Atomic # 7 Polarization: -53.54 SS G_CDS: 0.24 Total: -53.30 kcal Atomic # 8 Polarization: -66.49 SS G_CDS: -2.20 Total: -68.69 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -74.10 6.36 -67.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850842874.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.145 kcal (2) G-P(sol) polarization free energy of solvation -74.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds