Wall clock time and date at job start Tue Mar 31 2020 07:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35904 * 116.99885 * 2 1 4 4 C 1.38756 * 120.05863 * 0.02562 * 3 2 1 5 5 C 1.38120 * 119.94455 * 180.02562 * 4 3 2 6 6 C 1.38292 * 120.05575 * 0.02562 * 5 4 3 7 7 C 1.38243 * 120.11035 * 359.95755 * 6 5 4 8 8 C 1.50697 * 119.96712 * 179.97438 * 7 6 5 9 9 H 1.09007 * 109.47024 * 160.00715 * 8 7 6 10 10 O 1.42898 * 109.47190 * 40.00569 * 8 7 6 11 11 C 1.42905 * 113.99910 * 149.99527 * 10 8 7 12 12 C 1.50703 * 109.47327 * 280.00255 * 8 7 6 13 13 O 1.20823 * 119.99839 * 115.00444 * 12 8 7 14 14 O 1.34227 * 120.00066 * 294.72519 * 12 8 7 15 15 C 1.45196 * 116.99895 * 180.27642 * 14 12 8 16 16 H 1.08997 * 109.47498 * 30.00269 * 15 14 12 17 17 C 1.53010 * 109.47074 * 270.00116 * 15 14 12 18 18 C 1.50696 * 109.47185 * 150.00372 * 15 14 12 19 19 H 1.08007 * 120.00252 * 34.99625 * 18 15 14 20 20 C 1.37879 * 120.00306 * 214.99707 * 18 15 14 21 21 N 1.31513 * 120.00294 * 184.91682 * 20 18 15 22 22 Si 1.86805 * 119.99475 * 4.90964 * 20 18 15 23 23 H 1.48502 * 109.46788 * 84.83752 * 22 20 18 24 24 H 1.48502 * 109.46806 * 204.83440 * 22 20 18 25 25 H 1.48496 * 109.47567 * 324.83643 * 22 20 18 26 26 C 1.38163 * 120.05710 * 0.28342 * 7 6 5 27 27 H 1.09005 * 109.47111 * 300.00211 * 1 2 3 28 28 H 1.09000 * 109.46744 * 59.99671 * 1 2 3 29 29 H 1.08994 * 109.46995 * 179.97438 * 1 2 3 30 30 H 1.08002 * 120.02221 * 359.97438 * 4 3 2 31 31 H 1.08000 * 119.96763 * 180.02562 * 5 4 3 32 32 H 1.08001 * 119.94110 * 179.97438 * 6 5 4 33 33 H 1.09002 * 109.46871 * 179.97438 * 11 10 8 34 34 H 1.09000 * 109.47473 * 300.00275 * 11 10 8 35 35 H 1.09001 * 109.47099 * 60.00158 * 11 10 8 36 36 H 1.08998 * 109.46871 * 295.03456 * 17 15 14 37 37 H 1.08996 * 109.46682 * 55.03566 * 17 15 14 38 38 H 1.08996 * 109.47089 * 175.03750 * 17 15 14 39 39 H 0.96997 * 120.00012 * 179.97438 * 21 20 18 40 40 H 1.07999 * 120.02741 * 179.73991 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3754 0.0005 5 6 1.9209 3.6048 0.0000 6 6 3.3020 3.6758 -0.0016 7 6 4.0560 2.5171 -0.0018 8 6 5.5608 2.5982 -0.0041 9 1 5.9761 1.6537 0.3474 10 8 5.9822 3.6551 0.8605 11 6 7.2564 3.4352 1.4688 12 6 6.0470 2.8706 -1.4043 13 8 6.6099 3.9094 -1.6570 14 8 5.8598 1.9567 -2.3694 15 6 6.3596 2.2838 -3.6929 16 1 7.2313 2.9318 -3.6022 17 6 5.2681 3.0052 -4.4862 18 6 6.7479 1.0169 -4.4105 19 1 6.1801 0.1116 -4.2536 20 6 7.8281 1.0132 -5.2674 21 7 8.1089 -0.0644 -5.9670 22 14 8.8925 2.5392 -5.4346 23 1 9.9198 2.5460 -4.3623 24 1 9.5611 2.5333 -6.7606 25 1 8.0430 3.7511 -5.3140 26 6 3.4311 1.2849 -0.0063 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 0.2128 2.3204 0.0005 31 1 1.3339 4.5114 0.0008 32 1 3.7923 4.6381 -0.0024 33 1 7.5043 4.2819 2.1090 34 1 7.2212 2.5248 2.0672 35 1 8.0159 3.3314 0.6939 36 1 4.4315 2.3268 -4.6529 37 1 4.9250 3.8741 -3.9247 38 1 5.6704 3.3287 -5.4462 39 1 8.8685 -0.0667 -6.5701 40 1 4.0206 0.3800 -0.0107 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850842876.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:39 Heat of formation + Delta-G solvation = -139.689007 kcal Electronic energy + Delta-G solvation = -24021.715331 eV Core-core repulsion = 20381.638766 eV Total energy + Delta-G solvation = -3640.076566 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.45436 -39.69302 -38.04136 -37.05126 -35.60566 -33.12662 -32.14069 -30.61948 -30.38224 -27.79298 -27.24831 -26.01265 -25.37993 -22.62554 -22.27243 -21.10230 -19.70195 -18.21036 -17.56745 -17.01829 -16.40435 -16.17018 -16.01207 -15.78510 -15.72332 -15.36775 -14.62754 -14.45833 -13.89114 -13.79804 -13.44416 -12.95696 -12.86641 -12.61122 -12.57121 -12.28858 -12.03025 -11.78381 -11.50197 -11.38689 -11.19243 -11.10270 -10.98009 -10.82048 -10.70969 -10.53683 -9.95038 -9.60161 -9.40027 -9.12896 -8.81985 -8.72221 -8.19393 -6.28270 -4.31939 1.19790 1.47377 2.75194 3.07420 3.20473 3.27928 3.34072 3.34999 3.61404 4.09238 4.25448 4.63231 4.73188 4.93184 5.00357 5.02298 5.03312 5.04868 5.31376 5.32634 5.38181 5.43347 5.49318 5.52497 5.62690 5.69624 5.94537 6.17708 6.24993 6.41890 6.44203 6.50700 6.51853 6.67441 6.69132 6.97095 7.15845 7.35022 7.36227 7.51144 8.22650 8.61811 8.82707 9.30942 10.82999 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.015024 B = 0.004970 C = 0.004177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.269201 B = 5632.493367 C = 6701.078430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.315 6.315 3 C 0.124 3.876 4 C -0.201 4.201 5 C -0.086 4.086 6 C -0.123 4.123 7 C -0.045 4.045 8 C 0.139 3.861 9 H 0.106 0.894 10 O -0.353 6.353 11 C 0.027 3.973 12 C 0.433 3.567 13 O -0.509 6.509 14 O -0.341 6.341 15 C 0.182 3.818 16 H 0.046 0.954 17 C -0.152 4.152 18 C -0.517 4.517 19 H 0.086 0.914 20 C 0.083 3.917 21 N -0.881 5.881 22 Si 0.868 3.132 23 H -0.271 1.271 24 H -0.281 1.281 25 H -0.261 1.261 26 C -0.121 4.121 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.099 0.901 30 H 0.127 0.873 31 H 0.126 0.874 32 H 0.130 0.870 33 H 0.092 0.908 34 H 0.046 0.954 35 H 0.049 0.951 36 H 0.057 0.943 37 H 0.029 0.971 38 H 0.061 0.939 39 H 0.270 0.730 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.055 4.156 15.068 19.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.229 6.229 3 C 0.079 3.921 4 C -0.220 4.220 5 C -0.104 4.104 6 C -0.141 4.141 7 C -0.045 4.045 8 C 0.079 3.921 9 H 0.124 0.876 10 O -0.270 6.270 11 C -0.070 4.070 12 C 0.275 3.725 13 O -0.398 6.398 14 O -0.257 6.257 15 C 0.129 3.871 16 H 0.064 0.936 17 C -0.210 4.210 18 C -0.554 4.554 19 H 0.104 0.896 20 C -0.122 4.122 21 N -0.518 5.518 22 Si 0.694 3.306 23 H -0.196 1.196 24 H -0.207 1.207 25 H -0.185 1.185 26 C -0.140 4.140 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.117 0.883 30 H 0.145 0.855 31 H 0.144 0.856 32 H 0.148 0.852 33 H 0.110 0.890 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.076 0.924 37 H 0.049 0.951 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -11.779 4.325 14.818 19.417 hybrid contribution 0.700 0.773 -0.363 1.104 sum -11.079 5.098 14.455 18.913 Atomic orbital electron populations 1.23039 0.78562 1.03872 1.01214 1.86089 1.21201 1.26750 1.88825 1.18815 0.91968 0.84217 0.97096 1.21253 0.99921 0.92434 1.08375 1.20886 0.94295 0.97026 0.98163 1.20945 0.93572 0.98455 1.01109 1.18964 0.91997 0.93266 1.00276 1.20306 0.92259 0.92760 0.86752 0.87627 1.87969 1.36200 1.42823 1.60057 1.22932 0.84875 1.01887 0.97275 1.23906 0.76975 0.82959 0.88674 1.90593 1.39681 1.26584 1.82956 1.86683 1.72714 1.45019 1.21297 1.21017 0.93214 0.97503 0.75364 0.93639 1.22220 1.00187 0.98499 1.00049 1.20799 1.14584 0.96159 1.23880 0.89569 1.24903 0.96153 0.96163 0.94948 1.69852 1.28310 1.27920 1.25695 0.86978 0.81457 0.84065 0.78071 1.19600 1.20657 1.18509 1.20173 0.91658 0.97857 1.04300 0.92831 0.92619 0.88289 0.85486 0.85587 0.85185 0.88974 0.93537 0.93272 0.92377 0.95146 0.92018 0.91973 0.84409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.32 -4.03 10.50 -19.44 -0.20 -4.24 16 3 C 0.12 1.70 6.69 -39.21 -0.26 1.43 16 4 C -0.20 -2.39 9.04 -39.43 -0.36 -2.74 16 5 C -0.09 -1.04 10.04 -39.60 -0.40 -1.44 16 6 C -0.12 -1.77 9.35 -39.56 -0.37 -2.14 16 7 C -0.04 -0.69 4.95 -104.65 -0.52 -1.21 16 8 C 0.14 2.28 2.83 -29.03 -0.08 2.20 16 9 H 0.11 1.48 7.65 -51.93 -0.40 1.09 16 10 O -0.35 -5.49 9.21 -55.14 -0.51 -6.00 16 11 C 0.03 0.33 10.81 101.05 1.09 1.42 16 12 C 0.43 9.17 7.19 36.01 0.26 9.43 16 13 O -0.51 -11.96 15.73 -25.46 -0.40 -12.36 16 14 O -0.34 -8.08 9.86 -39.25 -0.39 -8.47 16 15 C 0.18 4.67 2.22 -27.88 -0.06 4.61 16 16 H 0.05 1.22 4.31 -51.93 -0.22 1.00 16 17 C -0.15 -3.51 9.53 37.16 0.35 -3.15 16 18 C -0.52 -14.82 9.24 -34.44 -0.32 -15.13 16 19 H 0.09 2.66 8.06 -52.48 -0.42 2.23 16 20 C 0.08 2.37 5.47 -17.82 -0.10 2.28 16 21 N -0.88 -26.27 13.96 55.43 0.77 -25.50 16 22 Si 0.87 21.61 26.99 -169.99 -4.59 17.03 16 23 H -0.27 -6.69 7.11 56.52 0.40 -6.28 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.26 -6.38 6.82 56.52 0.39 -5.99 16 26 C -0.12 -1.80 9.61 -39.43 -0.38 -2.18 16 27 H 0.05 0.36 7.66 -51.93 -0.40 -0.04 16 28 H 0.06 0.42 7.66 -51.93 -0.40 0.02 16 29 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.13 1.15 6.30 -52.49 -0.33 0.81 16 31 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 32 H 0.13 1.89 7.77 -52.49 -0.41 1.48 16 33 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.05 0.46 8.08 -51.93 -0.42 0.04 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 39 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 40 H 0.14 1.93 8.04 -52.49 -0.42 1.51 16 LS Contribution 344.80 15.07 5.20 5.20 Total: -1.00 -33.54 344.80 -5.79 -39.33 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -5.53 Total: 0.42 kcal Atomic # 6 Polarization: -5.26 SS G_CDS: -0.15 Total: -5.41 kcal Atomic # 7 Polarization: -26.27 SS G_CDS: 0.77 Total: -25.50 kcal Atomic # 8 Polarization: -29.57 SS G_CDS: -1.50 Total: -31.07 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.59 Total: 17.03 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.54 -5.79 -39.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850842876.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.357 kcal (2) G-P(sol) polarization free energy of solvation -33.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds