Wall clock time and date at job start Tue Mar 31 2020 07:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35904 * 116.99885 * 2 1 4 4 C 1.38756 * 120.05863 * 0.02562 * 3 2 1 5 5 C 1.38120 * 119.94455 * 180.02562 * 4 3 2 6 6 C 1.38292 * 120.05575 * 0.02562 * 5 4 3 7 7 C 1.38243 * 120.11035 * 359.95755 * 6 5 4 8 8 C 1.50697 * 119.96712 * 179.97438 * 7 6 5 9 9 H 1.09007 * 109.47024 * 160.00715 * 8 7 6 10 10 O 1.42898 * 109.47190 * 40.00569 * 8 7 6 11 11 C 1.42905 * 113.99910 * 149.99527 * 10 8 7 12 12 C 1.50703 * 109.47327 * 280.00255 * 8 7 6 13 13 O 1.20823 * 119.99839 * 115.00444 * 12 8 7 14 14 O 1.34227 * 120.00066 * 294.72519 * 12 8 7 15 15 C 1.45196 * 116.99895 * 180.27642 * 14 12 8 16 16 H 1.08997 * 109.47498 * 30.00269 * 15 14 12 17 17 C 1.53010 * 109.47074 * 270.00116 * 15 14 12 18 18 C 1.50696 * 109.47185 * 150.00372 * 15 14 12 19 19 H 1.08007 * 120.00252 * 34.99625 * 18 15 14 20 20 C 1.37879 * 120.00306 * 214.99707 * 18 15 14 21 21 N 1.31513 * 120.00294 * 184.91682 * 20 18 15 22 22 Si 1.86805 * 119.99475 * 4.90964 * 20 18 15 23 23 H 1.48502 * 109.46788 * 84.83752 * 22 20 18 24 24 H 1.48502 * 109.46806 * 204.83440 * 22 20 18 25 25 H 1.48496 * 109.47567 * 324.83643 * 22 20 18 26 26 C 1.38163 * 120.05710 * 0.28342 * 7 6 5 27 27 H 1.09005 * 109.47111 * 300.00211 * 1 2 3 28 28 H 1.09000 * 109.46744 * 59.99671 * 1 2 3 29 29 H 1.08994 * 109.46995 * 179.97438 * 1 2 3 30 30 H 1.08002 * 120.02221 * 359.97438 * 4 3 2 31 31 H 1.08000 * 119.96763 * 180.02562 * 5 4 3 32 32 H 1.08001 * 119.94110 * 179.97438 * 6 5 4 33 33 H 1.09002 * 109.46871 * 179.97438 * 11 10 8 34 34 H 1.09000 * 109.47473 * 300.00275 * 11 10 8 35 35 H 1.09001 * 109.47099 * 60.00158 * 11 10 8 36 36 H 1.08998 * 109.46871 * 295.03456 * 17 15 14 37 37 H 1.08996 * 109.46682 * 55.03566 * 17 15 14 38 38 H 1.08996 * 109.47089 * 175.03750 * 17 15 14 39 39 H 0.96997 * 120.00012 * 179.97438 * 21 20 18 40 40 H 1.07999 * 120.02741 * 179.73991 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3754 0.0005 5 6 1.9209 3.6048 0.0000 6 6 3.3020 3.6758 -0.0016 7 6 4.0560 2.5171 -0.0018 8 6 5.5608 2.5982 -0.0041 9 1 5.9761 1.6537 0.3474 10 8 5.9822 3.6551 0.8605 11 6 7.2564 3.4352 1.4688 12 6 6.0470 2.8706 -1.4043 13 8 6.6099 3.9094 -1.6570 14 8 5.8598 1.9567 -2.3694 15 6 6.3596 2.2838 -3.6929 16 1 7.2313 2.9318 -3.6022 17 6 5.2681 3.0052 -4.4862 18 6 6.7479 1.0169 -4.4105 19 1 6.1801 0.1116 -4.2536 20 6 7.8281 1.0132 -5.2674 21 7 8.1089 -0.0644 -5.9670 22 14 8.8925 2.5392 -5.4346 23 1 9.9198 2.5460 -4.3623 24 1 9.5611 2.5333 -6.7606 25 1 8.0430 3.7511 -5.3140 26 6 3.4311 1.2849 -0.0063 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 0.2128 2.3204 0.0005 31 1 1.3339 4.5114 0.0008 32 1 3.7923 4.6381 -0.0024 33 1 7.5043 4.2819 2.1090 34 1 7.2212 2.5248 2.0672 35 1 8.0159 3.3314 0.6939 36 1 4.4315 2.3268 -4.6529 37 1 4.9250 3.8741 -3.9247 38 1 5.6704 3.3287 -5.4462 39 1 8.8685 -0.0667 -6.5701 40 1 4.0206 0.3800 -0.0107 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850842876.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:38 Heat of formation + Delta-G solvation = -160.460873 kcal Electronic energy + Delta-G solvation = -24022.616067 eV Core-core repulsion = 20381.638766 eV Total energy + Delta-G solvation = -3640.977301 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.82555 -40.93832 -39.33521 -38.12923 -37.36947 -35.22292 -33.36417 -32.46343 -31.42956 -28.88352 -28.04036 -27.51281 -27.12623 -23.90530 -23.54421 -22.50425 -21.39758 -19.67217 -19.07372 -18.60380 -17.98789 -17.59068 -17.10054 -17.04733 -16.60256 -16.53276 -16.26061 -16.03461 -15.22176 -14.85935 -14.75633 -14.57543 -14.43537 -14.21268 -13.84120 -13.54947 -13.49533 -13.06207 -12.96079 -12.84665 -12.63521 -12.59907 -12.43644 -12.16302 -11.96856 -11.82778 -11.77703 -11.48979 -11.25959 -10.90753 -10.80420 -9.92700 -9.19531 -8.49095 -6.58937 0.14535 0.44743 1.13589 1.22789 1.26573 1.37224 1.66681 2.17429 2.31406 2.56038 2.83977 2.95626 3.50899 3.73266 3.77619 3.90908 4.11763 4.17319 4.31109 4.33793 4.43335 4.44976 4.46213 4.52911 4.53759 4.57111 4.62777 4.77097 4.77536 4.81903 4.95454 5.25817 5.25978 5.33966 5.41131 5.45928 5.57050 5.71264 5.82839 6.12263 6.45608 6.49357 6.82493 7.08627 8.66206 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.015024 B = 0.004970 C = 0.004177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.269201 B = 5632.493367 C = 6701.078430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.336 6.336 3 C 0.116 3.884 4 C -0.194 4.194 5 C -0.080 4.080 6 C -0.139 4.139 7 C -0.062 4.062 8 C 0.149 3.851 9 H 0.126 0.874 10 O -0.361 6.361 11 C 0.018 3.982 12 C 0.430 3.570 13 O -0.535 6.535 14 O -0.352 6.352 15 C 0.182 3.818 16 H 0.037 0.963 17 C -0.145 4.145 18 C -0.530 4.530 19 H 0.048 0.952 20 C 0.038 3.962 21 N -0.920 5.920 22 Si 0.926 3.074 23 H -0.268 1.268 24 H -0.264 1.264 25 H -0.253 1.253 26 C -0.142 4.142 27 H 0.072 0.928 28 H 0.063 0.937 29 H 0.117 0.883 30 H 0.160 0.840 31 H 0.158 0.842 32 H 0.124 0.876 33 H 0.117 0.883 34 H 0.072 0.928 35 H 0.031 0.969 36 H 0.060 0.940 37 H 0.043 0.957 38 H 0.066 0.934 39 H 0.277 0.723 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.412 5.574 16.184 21.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.250 6.250 3 C 0.071 3.929 4 C -0.212 4.212 5 C -0.098 4.098 6 C -0.157 4.157 7 C -0.062 4.062 8 C 0.089 3.911 9 H 0.143 0.857 10 O -0.279 6.279 11 C -0.078 4.078 12 C 0.274 3.726 13 O -0.425 6.425 14 O -0.269 6.269 15 C 0.129 3.871 16 H 0.054 0.946 17 C -0.203 4.203 18 C -0.567 4.567 19 H 0.067 0.933 20 C -0.163 4.163 21 N -0.558 5.558 22 Si 0.749 3.251 23 H -0.193 1.193 24 H -0.189 1.189 25 H -0.177 1.177 26 C -0.160 4.160 27 H 0.091 0.909 28 H 0.082 0.918 29 H 0.135 0.865 30 H 0.178 0.822 31 H 0.176 0.824 32 H 0.142 0.858 33 H 0.135 0.865 34 H 0.090 0.910 35 H 0.049 0.951 36 H 0.079 0.921 37 H 0.062 0.938 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -13.150 5.740 15.951 21.455 hybrid contribution 1.009 0.261 -0.612 1.208 sum -12.142 6.001 15.339 20.463 Atomic orbital electron populations 1.23380 0.76191 1.05640 1.02488 1.86067 1.23722 1.26579 1.88672 1.18974 0.91804 0.85292 0.96818 1.21620 1.01527 0.91500 1.06566 1.21246 0.93514 0.98502 0.96496 1.21057 0.94811 0.97799 1.02055 1.18943 0.91269 0.94010 1.01972 1.20322 0.93273 0.93744 0.83764 0.85681 1.87971 1.37531 1.42929 1.59505 1.23202 0.83050 1.04404 0.97148 1.24931 0.75966 0.81972 0.89743 1.90562 1.40902 1.27490 1.83569 1.86647 1.72875 1.46163 1.21174 1.20837 0.93950 0.95867 0.76452 0.94559 1.22124 0.99434 0.98735 1.00013 1.20877 1.14735 0.96124 1.25006 0.93322 1.25623 0.97205 0.99135 0.94348 1.69950 1.29273 1.30026 1.26558 0.86059 0.79781 0.80464 0.78806 1.19278 1.18859 1.17740 1.20258 0.92738 0.97569 1.05468 0.90924 0.91814 0.86516 0.82209 0.82428 0.85778 0.86520 0.90976 0.95067 0.92121 0.93766 0.91505 0.91357 0.84814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.35 16 2 O -0.34 -8.16 10.50 -92.47 -0.97 -9.13 16 3 C 0.12 3.03 6.69 22.51 0.15 3.18 16 4 C -0.19 -4.06 9.04 22.37 0.20 -3.86 16 5 C -0.08 -1.74 10.04 22.25 0.22 -1.51 16 6 C -0.14 -3.86 9.35 22.28 0.21 -3.66 16 7 C -0.06 -1.88 4.95 -19.88 -0.10 -1.98 16 8 C 0.15 4.85 2.83 29.10 0.08 4.93 16 9 H 0.13 3.49 7.65 -2.38 -0.02 3.47 16 10 O -0.36 -10.96 9.21 -129.95 -1.20 -12.16 16 11 C 0.02 0.41 10.81 113.37 1.23 1.63 16 12 C 0.43 18.32 7.19 71.24 0.51 18.83 16 13 O -0.53 -25.17 15.73 28.39 0.45 -24.72 16 14 O -0.35 -16.98 9.86 -51.39 -0.51 -17.49 16 15 C 0.18 9.46 2.22 29.85 0.07 9.52 16 16 H 0.04 1.95 4.31 -2.39 -0.01 1.94 16 17 C -0.15 -6.65 9.53 71.99 0.69 -5.96 16 18 C -0.53 -31.21 9.24 25.60 0.24 -30.97 16 19 H 0.05 3.15 8.06 -2.91 -0.02 3.12 16 20 C 0.04 2.22 5.47 84.66 0.46 2.68 16 21 N -0.92 -55.82 13.96 21.45 0.30 -55.52 16 22 Si 0.93 44.43 26.99 68.60 1.85 46.28 16 23 H -0.27 -12.64 7.11 99.48 0.71 -11.94 16 24 H -0.26 -11.86 7.11 99.48 0.71 -11.16 16 25 H -0.25 -11.79 6.82 99.48 0.68 -11.11 16 26 C -0.14 -4.18 9.61 22.37 0.21 -3.97 16 27 H 0.07 0.73 7.66 -2.38 -0.02 0.71 16 28 H 0.06 0.78 7.66 -2.39 -0.02 0.76 16 29 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.16 2.22 6.30 -2.91 -0.02 2.20 16 31 H 0.16 2.36 8.06 -2.91 -0.02 2.34 16 32 H 0.12 3.53 7.77 -2.91 -0.02 3.50 16 33 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.07 1.30 8.08 -2.39 -0.02 1.28 16 35 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.06 2.69 8.14 -2.39 -0.02 2.67 16 37 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.07 2.94 8.14 -2.39 -0.02 2.92 16 39 H 0.28 15.47 8.31 -92.71 -0.77 14.70 16 40 H 0.13 3.87 8.04 -2.91 -0.02 3.85 16 Total: -1.00 -73.59 344.80 6.22 -67.37 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: 1.01 Total: 15.15 kcal Atomic # 6 Polarization: -15.07 SS G_CDS: 5.29 Total: -9.78 kcal Atomic # 7 Polarization: -55.82 SS G_CDS: 0.30 Total: -55.52 kcal Atomic # 8 Polarization: -61.27 SS G_CDS: -2.23 Total: -63.50 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 1.85 Total: 46.28 kcal Total: -73.59 6.22 -67.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850842876.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.088 kcal (2) G-P(sol) polarization free energy of solvation -73.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds